Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Reverse (-)

78974848 .. 78977320

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGCGCAAATCAGTTGGGGGTTTCTCTTCTTCTTCTTGTACTCATTGCTGCAGCAGCAGCAGAGGTGGTATGCCTTTCCTTCACTCTACTGATCCTCTTGTTGCTTTATTTCATTCTCAATCTCAACACTCAAAGCCAAGCAAATGTAGAGAAACCCAGCTTGTTGAGGAGGTGTTCCATGAAATGCTTCGCTCGCGTCCTCCGCCTTCTTCTGTTATCCCTTTCAATCAAATCTCGACTCGACTTGTCAAATTGAAACACTATTCAACAGTCATCACTTTGAATAGACAGATGCTTCTCCGTGGAATTGTTCCTGATCAATATACTCTGTCTATTATCATCAACTGCTATTCCCATTTGAATCAAATGGGGTTTAGCTTGTCTGTCTTGGGACTATTCTTCAAACTGGGTCTTCAACCAAATGTTATTACCTTCAACACCCTAATCAACGGCTTTGTTCTCCACAATCAAGTGCCTGAGGCTGCACGAATTTTCACCAAAATGCTGGAGGAAGGTCGTTGTAAGCCCAATGTGGTTACTTGCAACACACTTATAAAGGGCTTTTGCATGAGAGGAAACAACAGCAGAGCTGCAATTCAATTACTTAGGAACATGGAAGAAACAGGATGCCAGCCTGACATTGTTTCCTATAGCACCATCATCGACAGCCTTTGCAAGGATACTCTTATTGATGAAGCAATGAACCTCTTCTCGGAAATGACTAGTGGAGGTATTGCTCCAAACGTTGTTACTTACAACACCTTGATTGACGGAGTCTGCAAACTAGGCCAGTGGAAACAAGCTGCAAGGCTGTTGGATGAAATGTCGAGTAAAGGTATCTTTCCAAATCTCCTCACTTTCAGTGTCTTGGTTGATACATTTTGTAAGGAAGGGATGGTTGTGGAAGCCAAAAGTGTGGTTCAAATGATGATTCAAAGACATATTGAGCCTGATACGGTTATATACAACTCACTTATGGACGGTTACTGTTTGCGAGGAGAAATGAACGAGGCAAGACAAGTTTTTGATCTTATGATTAGCAGGGGCTCCATGGTTGATGTTCAGAGTTGTAGCATATTGATAAATGGATATTGCAAGGGTAAAATGCTCGATAAGGCTTACAAGATTTTCAAGGAAATGCCTCGTATGGAACTTGTTCCTGATGTCGTTACTTATACCACTCTTATTGATGGTCTTTGCAAAGTGGGGAGAGTTCAAGAAGCAGAAGAGTTGTTCTCTCAGATGCAAGGTTGTGGCCAGCTTCCAAATGTTCAAACTTATGCTGTGATACTTGATGGCCTGTGTAACAACCAGCAACTTTCTACGGCAATAGAATTGCTTACACAAATGGAAGCCAACAAAGTAGAACTTAATATTGTAGTTTACACTCTTGTTATTGAAGGTTTGTGCAAAGCTGGAAAAATTGAATCCGCAAGAGATCTCTTCTGTGGTTTGTCATCAAAAGGACTTCAGCCTAATGTGCGGACATACACTGTAATGATTCATGGACTTTGTCATCATGGCTTCATAATTGAAGCAGAAAAGTTGCTGAGAGAAATGGGAGGGAAAGGATGTTCTCCAAATGGTTGCACCTATAACACCATTATCCGAGGTTTTATCAATAACAATGAGACATCAAGGGCTACGAGACTTATTCAAGAAATGCGTGAGAGGGGTTTCTCTGCAGATGCATCAACTATGGAATTGATTGTTGATTTATTGTCGAAGGATACAAGGAAGTTCGCTGAAACCGTGGAGTTGCTAATTGGGTTGAAGAACTATGACTCACAAATGGACAAGTGCTTCAGTGGTTCTGTGAGGTTTCCCCACATTCCTCGTCCTAAGATGAGGGTTGGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCAGAGAAGATGGGATTGGCCTACGTGGATGTGGAATCGCTGAAAAAGCTTAACAAGGACAAGAAGCTGGTCAAGAAGCTTGCAAAGAAATATCATGCATTTTTGGCTTCTGAATCTGTCATCAAGCAAATTACTCGTCTTTTGGGCCCTGGTCTTAACAAGGCAGGTAAGTTTCAAACTCTGGCCATGGTGAAGTTCCAACTCAAGAAGGTTCTTTGTATGGGTGTTGCTGTTGAGAAACAGATATTCCAGAATGTGCAACTCAGTGTCAATTTCCTGGTTTCTCTGTTGAAGAAGAATTGGCAGAATGTGAGATCATTGAACATAAAAAGTACCATGGGGAATGCTATCCGAATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

749

Amino Acids

83.76

Weight (kDa)

8.97

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	114 - 239	9.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	136 - 187	6.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	137 - 168	1.8e-07	PPR repeat
PPR_2	PF13041	140 - 189	8.6e-14	PPR repeat family
PPR_1	PF12854	174 - 206	1.2e-06	PPR repeat
PPR_3	PF13812	175 - 222	4.9e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	176 - 226	9e-16	PPR repeat family
PPR_1	PF12854	209 - 241	2e-12	PPR repeat
PPR_2	PF13041	212 - 261	4.8e-18	PPR repeat family
PPR	PF01535	215 - 245	8.4e-06	PPR repeat
PPR_long	PF17177	229 - 334	9.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	236 - 295	1.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	244 - 276	8.8e-13	PPR repeat
PPR_2	PF13041	247 - 296	3.2e-18	PPR repeat family
PPR	PF01535	250 - 280	8.9e-08	PPR repeat
PPR_1	PF12854	278 - 310	2.8e-07	PPR repeat
TPR_24	PF23276	298 - 414	5.5e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	314 - 345	4e-10	PPR repeat
PPR_2	PF13041	317 - 366	1.8e-14	PPR repeat family
PPR	PF01535	320 - 349	1e-07	PPR repeat
PPR_long	PF17177	339 - 466	1.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	353 - 401	2.3e-16	PPR repeat family
PPR	PF01535	356 - 383	1e-06	PPR repeat
PPR_1	PF12854	358 - 380	2.1e-06	PPR repeat
PPR_3	PF13812	375 - 432	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	384 - 416	2.2e-15	PPR repeat
PPR_2	PF13041	387 - 436	3e-18	PPR repeat family
PPR	PF01535	390 - 419	2e-09	PPR repeat
TPR_24	PF23276	391 - 482	7.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	419 - 451	9.4e-06	PPR repeat
PPR_2	PF13041	430 - 471	1.9e-07	PPR repeat family
PPR_long	PF17177	439 - 561	4.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	455 - 482	9.9e-06	PPR repeat
PPR_2	PF13041	458 - 506	1.1e-15	PPR repeat family
PPR_3	PF13812	486 - 539	4.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	488 - 520	1.8e-10	PPR repeat
PPR	PF01535	496 - 525	4.7e-08	PPR repeat
PPR_2	PF13041	505 - 540	1.6e-06	PPR repeat family
PPR_1	PF12854	523 - 556	1.1e-06	PPR repeat
PPR_2	PF13041	527 - 574	3.4e-08	PPR repeat family
Ribosomal_L1	PF00687	574 - 697	7.3e-21	Ribosomal protein L1p/L10e family
Ribosomal_L1	PF00687	708 - 743	1e-05	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	2042
AccII	CGCG	1 cut(s)	196
AciI	CCGC	3 cut(s)	203, 1431, 1483
AclI	AACGTT	1 cut(s)	744
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	2 cut(s)	1255, 2070
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	2 cut(s)	1454, 1789
AfaI	GTAC	2 cut(s)	40, 2221
AfiI	CCNNNNNNNGG	2 cut(s)	676, 712
AhlI	ACTAGT	1 cut(s)	722
AjnI	CCWGG	2 cut(s)	2035, 2163
AjuI	GAANNNNNNNTTGG	2 cut(s)	1886, 1918
AloI	GAACNNNNNNTCC	2 cut(s)	1558, 1590
AluBI	AGCT	9 cut(s)	160, 378, 590, 803, 1261, 1415, 1936, 1954, 1966
AluI	AGCT	9 cut(s)	160, 378, 590, 803, 1261, 1415, 1936, 1954, 1966
Alw26I	GTCTC	2 cut(s)	1625, 1642
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	6 cut(s)	787, 1255, 1297, 1905, 2032, 2070
ApaI	GGGCCC	1 cut(s)	2036
ApeKI	GCWGC	7 cut(s)	48, 51, 54, 57, 482, 590, 803
ApoI	RAATTY	1 cut(s)	489
ArsI	GACNNNNNNTTYG	2 cut(s)	2008, 2040
Asp700I	GAANNNNTTC	3 cut(s)	186, 707, 1155
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	2032, 2033
AsuHPI	GGTGA	2 cut(s)	487, 2089
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	2036
BalI	TGGCCA	2 cut(s)	1257, 2072
BanII	GRGCYC	2 cut(s)	1049, 2036
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	7 cut(s)	35, 63, 66, 69, 469, 577, 790
BccI	CCATC	5 cut(s)	665, 889, 1184, 1289, 1891
BceAI	ACGGC	2 cut(s)	466, 1341
BcgI	CGANNNNNNTGC	4 cut(s)	643, 677, 2003, 2037
BciT130I	CCWGG	2 cut(s)	2037, 2165
BciVI	GTATCC	2 cut(s)	673, 1723
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	1625, 1642
BcuI	ACTAGT	1 cut(s)	722
BfaI	CTAG	2 cut(s)	723, 785
BfmI	CTRYAG	3 cut(s)	49, 649, 1683
BfuAI	ACCTGC	1 cut(s)	2042
BfuI	GTATCC	2 cut(s)	673, 1723
BglII	AGATCT	1 cut(s)	1438
BisI	GCNGC	7 cut(s)	49, 52, 55, 58, 483, 591, 804
BlpI	GCTNAGC	1 cut(s)	1872
BlsI	GCNGC	7 cut(s)	50, 53, 56, 59, 484, 592, 805
Bme1390I	CCNGG	2 cut(s)	2037, 2165
BmgT120I	GGNCC	2 cut(s)	2032, 2033
BmiI	GGNNCC	2 cut(s)	1048, 2034
BmrFI	CCNGG	2 cut(s)	2037, 2165
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	6 cut(s)	282, 617, 1233, 1678, 1700, 1858
BmuI	ACTGGG	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	404
BplI	GAGNNNNNCTC	2 cut(s)	1220, 1252
BpmI	CTGGAG	1 cut(s)	527
Bpu1102I	GCTNAGC	1 cut(s)	1872
BpuEI	CTTGAG	1 cut(s)	2075
BsaAI	YACGTR	1 cut(s)	1912
BsaJI	CCNNGG	7 cut(s)	301, 1050, 1609, 1752, 2035, 2073, 2223
Bsc4I	CCNNNNNNNGG	2 cut(s)	676, 712
Bse1I	ACTGG	2 cut(s)	411, 790
Bse21I	CCTNAGG	1 cut(s)	477
Bse3DI	GCAATG	2 cut(s)	43, 705
BseBI	CCWGG	2 cut(s)	2037, 2165
BseDI	CCNNGG	7 cut(s)	301, 1050, 1609, 1752, 2035, 2073, 2223
BseGI	GGATG	5 cut(s)	632, 823, 900, 1577, 1921
BseLI	CCNNNNNNNGG	2 cut(s)	676, 712
BseMI	GCAATG	2 cut(s)	43, 705
BseMII	CTCAG	5 cut(s)	468, 1253, 1541, 1886, 2164
BseNI	ACTGG	2 cut(s)	411, 790
BseRI	GAGGAG	3 cut(s)	182, 842, 1011
BseSI	GKGCMC	1 cut(s)	2036
BseXI	GCAGC	7 cut(s)	35, 63, 66, 69, 469, 577, 790
BseYI	CCCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	6 cut(s)	789, 1257, 1299, 1907, 2034, 2072
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	676, 712
BsmAI	GTCTC	2 cut(s)	1625, 1642
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	2236
BsnI	GGCC	6 cut(s)	789, 1257, 1299, 1907, 2034, 2072
Bsp120I	GGGCCC	1 cut(s)	2032
Bsp1286I	GDGCHC	2 cut(s)	1049, 2036
Bsp143I	GATC	5 cut(s)	91, 316, 1027, 1438, 2201
Bsp1720I	GCTNAGC	1 cut(s)	1872
Bsp19I	CCATGG	3 cut(s)	1050, 2073, 2223
BspACI	CCGC	3 cut(s)	203, 1431, 1483
BspANI	GGCC	6 cut(s)	789, 1257, 1299, 1907, 2034, 2072
BspCNI	CTCAG	5 cut(s)	469, 1252, 1542, 1885, 2163
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	1048, 2034
BspMAI	CTGCAG	2 cut(s)	53, 1687
BspMI	ACCTGC	1 cut(s)	2042
BspPI	GGATC	1 cut(s)	86
BsrDI	GCAATG	2 cut(s)	43, 705
BsrI	ACTGG	2 cut(s)	411, 790
BssECI	CCNNGG	7 cut(s)	301, 1050, 1609, 1752, 2035, 2073, 2223
BssMI	GATC	5 cut(s)	91, 316, 1027, 1438, 2201
BssT1I	CCWWGG	3 cut(s)	1050, 2073, 2223
Bst2UI	CCWGG	2 cut(s)	2037, 2165
Bst4CI	ACNGT	6 cut(s)	271, 958, 983, 989, 1495, 1753
Bst6I	CTCTTC	5 cut(s)	31, 713, 1221, 1448, 1878
BstBAI	YACGTR	1 cut(s)	1912
BstC8I	GCNNGC	5 cut(s)	194, 632, 1259, 1859, 1968
BstDEI	CTNAG	7 cut(s)	477, 605, 1239, 1550, 1842, 1872, 2150
BstDSI	CCRYGG	5 cut(s)	301, 1050, 1752, 2073, 2223
BstENI	CCTNNNNNAGG	1 cut(s)	674
BstF5I	GGATG	5 cut(s)	632, 823, 900, 1577, 1921
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	5 cut(s)	94, 319, 1030, 1441, 2204
BstMAI	GTCTC	2 cut(s)	1625, 1642
BstMBI	GATC	5 cut(s)	91, 316, 1027, 1438, 2201
BstMWI	GCNNNNNNNGC	8 cut(s)	54, 57, 193, 202, 786, 1480, 1933, 1991
BstNI	CCWGG	2 cut(s)	2037, 2165
BstNSI	RCATGY	2 cut(s)	1861, 1880
BstSCI	CCNGG	2 cut(s)	2035, 2163
BstSFI	CTRYAG	3 cut(s)	49, 649, 1683
BstSLI	GKGCMC	1 cut(s)	2036
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	7 cut(s)	35, 63, 66, 69, 469, 577, 790
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	1438
BstXI	CCANNNNNNTGG	2 cut(s)	505, 916
BstYI	RGATCY	1 cut(s)	1438
Bsu36I	CCTNAGG	1 cut(s)	477
BsuI	GTATCC	2 cut(s)	673, 1723
BsuRI	GGCC	6 cut(s)	789, 1257, 1299, 1907, 2034, 2072
BtgI	CCRYGG	5 cut(s)	301, 1050, 1752, 2073, 2223
BtsCI	GGATG	5 cut(s)	632, 823, 900, 1577, 1921
BtsIMutI	CAGTG	5 cut(s)	797, 868, 1491, 1813, 2158
BveI	ACCTGC	1 cut(s)	2042
Cac8I	GCNNGC	5 cut(s)	194, 632, 1259, 1859, 1968
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	2032, 2033
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	39, 2220
CspCI	CAANNNNNGTGG	2 cut(s)	1168, 1203
CviQI	GTAC	2 cut(s)	39, 2220
DdeI	CTNAG	7 cut(s)	477, 605, 1239, 1550, 1842, 1872, 2150
DpnI	GATC	5 cut(s)	93, 318, 1029, 1440, 2203
DpnII	GATC	5 cut(s)	91, 316, 1027, 1438, 2201
EaeI	YGGCCR	2 cut(s)	1255, 2070
Eam1104I	CTCTTC	5 cut(s)	31, 713, 1221, 1448, 1878
EarI	CTCTTC	5 cut(s)	31, 713, 1221, 1448, 1878
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	3 cut(s)	1050, 2073, 2223
Eco24I	GRGCYC	2 cut(s)	1049, 2036
Eco57I	CTGAAG	2 cut(s)	1454, 1789
Eco81I	CCTNAGG	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	2033
EcoRII	CCWGG	2 cut(s)	2035, 2163
EcoT14I	CCWWGG	3 cut(s)	1050, 2073, 2223
EcoT22I	ATGCAT	2 cut(s)	1693, 1987
EcoT38I	GRGCYC	2 cut(s)	1049, 2036
ErhI	CCWWGG	3 cut(s)	1050, 2073, 2223
FalI	AAGNNNNNCTT	2 cut(s)	1353, 1385
FaqI	GGGAC	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	7 cut(s)	49, 52, 55, 58, 483, 591, 804
FokI	GGATG	5 cut(s)	639, 830, 907, 1584, 1928
FriOI	GRGCYC	2 cut(s)	1049, 2036
Fsp4HI	GCNGC	7 cut(s)	49, 52, 55, 58, 483, 591, 804
FspBI	CTAG	2 cut(s)	723, 785
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	7 cut(s)	49, 52, 55, 58, 483, 591, 804
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	6 cut(s)	789, 1257, 1299, 1907, 2034, 2072
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	2 cut(s)	1934, 1964
HphI	GGTGA	2 cut(s)	487, 2089
Hpy166II	GTNNAC	1 cut(s)	1384
Hpy188I	TCNGA	6 cut(s)	715, 1065, 1242, 1610, 1999, 2240
Hpy188III	TCNNGA	8 cut(s)	235, 314, 1160, 1217, 1658, 1960, 2092, 2137
Hpy8I	GTNNAC	1 cut(s)	1384
HpyAV	CCTTC	8 cut(s)	89, 216, 442, 506, 884, 1394, 1720, 2089
HpyCH4III	ACNGT	6 cut(s)	271, 958, 983, 989, 1495, 1753
HpyCH4IV	ACGT	2 cut(s)	744, 1911
HpyF10VI	GCNNNNNNNGC	8 cut(s)	54, 57, 193, 202, 786, 1480, 1933, 1991
HpyF3I	CTNAG	7 cut(s)	477, 605, 1239, 1550, 1842, 1872, 2150
HpySE526I	ACGT	2 cut(s)	744, 1911
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	91, 316, 1027, 1438, 2201
LmnI	GCTCC	2 cut(s)	742, 1052
Lsp1109I	GCAGC	7 cut(s)	35, 63, 66, 69, 469, 577, 790
LweI	GCATC	6 cut(s)	282, 617, 1233, 1678, 1700, 1858
MaeI	CTAG	2 cut(s)	723, 785
MaeII	ACGT	2 cut(s)	744, 1911
MaeIII	GTNAC	5 cut(s)	535, 748, 983, 1168, 1304
MalI	GATC	5 cut(s)	93, 318, 1029, 1440, 2203
MboI	GATC	5 cut(s)	91, 316, 1027, 1438, 2201
MflI	RGATCY	1 cut(s)	1438
MhlI	GDGCHC	2 cut(s)	1049, 2036
MlsI	TGGCCA	2 cut(s)	1257, 2072
MluNI	TGGCCA	2 cut(s)	1257, 2072
MlyI	GAGTC	3 cut(s)	232, 783, 1778
MmeI	TCCRAC	2 cut(s)	795, 2110
Mox20I	TGGCCA	2 cut(s)	1257, 2072
Mph1103I	ATGCAT	2 cut(s)	1693, 1987
MroXI	GAANNNNTTC	3 cut(s)	186, 707, 1155
MscI	TGGCCA	2 cut(s)	1257, 2072
MseI	TTAA	3 cut(s)	1371, 1938, 2043
MslI	CAYNNNNRTG	2 cut(s)	500, 1496
Msp20I	TGGCCA	2 cut(s)	1257, 2072
MspR9I	CCNGG	2 cut(s)	2037, 2165
Mva1269I	GAATGC	1 cut(s)	2236
MvaI	CCWGG	2 cut(s)	2037, 2165
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	8 cut(s)	54, 57, 193, 202, 786, 1480, 1933, 1991
NcoI	CCATGG	3 cut(s)	1050, 2073, 2223
NdeII	GATC	5 cut(s)	91, 316, 1027, 1438, 2201
NlaIV	GGNNCC	2 cut(s)	1048, 2034
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	2 cut(s)	1693, 1987
NspI	RCATGY	2 cut(s)	1861, 1880
PaeI	GCATGC	1 cut(s)	1861
PcsI	WCGNNNNNNNCGW	1 cut(s)	1749
PctI	GAATGC	1 cut(s)	2236
PdmI	GAANNNNTTC	3 cut(s)	186, 707, 1155
PfeI	GAWTC	7 cut(s)	361, 931, 1427, 1501, 1922, 2000, 2241
PflFI	GACNNNGTC	2 cut(s)	773, 1512
PkrI	GCNGC	7 cut(s)	50, 53, 56, 59, 484, 592, 805
PleI	GAGTC	3 cut(s)	232, 782, 1778
PpsI	GAGTC	3 cut(s)	232, 782, 1778
Ppu21I	YACGTR	1 cut(s)	1912
PsiI	TTATAA	1 cut(s)	554
Psp1406I	AACGTT	1 cut(s)	744
Psp6I	CCWGG	2 cut(s)	2035, 2163
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	2035, 2163
PspN4I	GGNNCC	2 cut(s)	1048, 2034
PspOMI	GGGCCC	1 cut(s)	2032
PspPI	GGNCC	2 cut(s)	2032, 2033
PstI	CTGCAG	2 cut(s)	53, 1687
PsuI	RGATCY	1 cut(s)	1438
PsyI	GACNNNGTC	2 cut(s)	773, 1512
RsaI	GTAC	2 cut(s)	40, 2221
RsaNI	GTAC	2 cut(s)	39, 2220
RseI	CAYNNNNRTG	2 cut(s)	500, 1496
SaqAI	TTAA	3 cut(s)	1371, 1938, 2043
SatI	GCNGC	7 cut(s)	49, 52, 55, 58, 483, 591, 804
Sau3AI	GATC	5 cut(s)	91, 316, 1027, 1438, 2201
Sau96I	GGNCC	2 cut(s)	2032, 2033
SchI	GAGTC	3 cut(s)	232, 783, 1778
ScrFI	CCNGG	2 cut(s)	2037, 2165
SduI	GDGCHC	2 cut(s)	1049, 2036
SfaNI	GCATC	6 cut(s)	282, 617, 1233, 1678, 1700, 1858
SfcI	CTRYAG	3 cut(s)	49, 649, 1683
SmiMI	CAYNNNNRTG	2 cut(s)	500, 1496
SmlI	CTYRAG	1 cut(s)	2090
SmoI	CTYRAG	1 cut(s)	2090
SpeI	ACTAGT	1 cut(s)	722
SphI	GCATGC	1 cut(s)	1861
SsiI	CCGC	3 cut(s)	203, 1431, 1483
SspI	AATATT	1 cut(s)	1375
SspMI	CTAG	2 cut(s)	723, 785
StyD4I	CCNGG	2 cut(s)	2035, 2163
StyI	CCWWGG	3 cut(s)	1050, 2073, 2223
TaaI	ACNGT	6 cut(s)	271, 958, 983, 989, 1495, 1753
TaiI	ACGT	2 cut(s)	747, 1914
TaqI	TCGA	6 cut(s)	236, 241, 663, 827, 1110, 1724
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	7 cut(s)	361, 931, 1427, 1501, 1922, 2000, 2241
Tru1I	TTAA	3 cut(s)	1371, 1938, 2043
Tru9I	TTAA	3 cut(s)	1371, 1938, 2043
TscAI	CASTG	5 cut(s)	797, 868, 1498, 1813, 2158
TseI	GCWGC	7 cut(s)	48, 51, 54, 57, 482, 590, 803
TspDTI	ATGAA	8 cut(s)	101, 195, 708, 716, 834, 1019, 1493, 1516
TspGWI	ACGGA	2 cut(s)	290, 786
TspRI	CASTG	5 cut(s)	797, 868, 1498, 1813, 2158
Tth111I	GACNNNGTC	2 cut(s)	773, 1512
XagI	CCTNNNNNAGG	1 cut(s)	674
XapI	RAATTY	1 cut(s)	489
XceI	RCATGY	2 cut(s)	1861, 1880
XmnI	GAANNNNTTC	3 cut(s)	186, 707, 1155
XspI	CTAG	2 cut(s)	723, 785
Zsp2I	ATGCAT	2 cut(s)	1693, 1987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.