Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 20 - 73 | 5.3e-09 | PPR repeat family |
| PPR_3 | PF13812 | 88 - 144 | 9.6e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 95 - 127 | 1.1e-07 | PPR repeat |
| PPR_2 | PF13041 | 100 - 147 | 1e-15 | PPR repeat family |
| PPR | PF01535 | 103 - 130 | 1.7e-06 | PPR repeat |
| PPR_1 | PF12854 | 132 - 163 | 4.4e-09 | PPR repeat |
| PPR_2 | PF13041 | 134 - 183 | 9.9e-13 | PPR repeat family |
| TPR_24 | PF23276 | 136 - 225 | 5.4e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 166 - 198 | 9.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 179 - 218 | 1.6e-07 | PPR repeat family |
| PPR_1 | PF12854 | 205 - 225 | 1.7e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 83 |
| AciI | CCGC | 1 cut(s) | 389 |
| AclWI | GGATC | 2 cut(s) | 673, 686 |
| AcoI | YGGCCR | 2 cut(s) | 3, 496 |
| AdeI | CACNNNGTG | 1 cut(s) | 61 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AgsI | TTSAA | 3 cut(s) | 125, 206, 564 |
| AjnI | CCWGG | 1 cut(s) | 674 |
| AluBI | AGCT | 3 cut(s) | 232, 502, 656 |
| AluI | AGCT | 3 cut(s) | 232, 502, 656 |
| Alw21I | GWGCWC | 1 cut(s) | 57 |
| AlwI | GGATC | 2 cut(s) | 673, 686 |
| AoxI | GGCC | 4 cut(s) | 3, 357, 496, 672 |
| ApeKI | GCWGC | 2 cut(s) | 11, 288 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 381, 396 |
| AsuC2I | CCSGG | 1 cut(s) | 447 |
| AsuHPI | GGTGA | 1 cut(s) | 116 |
| BalI | TGGCCA | 1 cut(s) | 498 |
| BamHI | GGATCC | 1 cut(s) | 678 |
| BbsI | GAAGAC | 2 cut(s) | 114, 600 |
| Bbv12I | GWGCWC | 1 cut(s) | 57 |
| BbvI | GCAGC | 2 cut(s) | 23, 275 |
| BccI | CCATC | 5 cut(s) | 133, 530, 583, 635, 638 |
| BceAI | ACGGC | 1 cut(s) | 582 |
| BciT130I | CCWGG | 1 cut(s) | 676 |
| BciVI | GTATCC | 1 cut(s) | 702 |
| BcnI | CCSGG | 1 cut(s) | 447 |
| BfaI | CTAG | 1 cut(s) | 703 |
| BfuI | GTATCC | 1 cut(s) | 702 |
| BglII | AGATCT | 1 cut(s) | 508 |
| BisI | GCNGC | 2 cut(s) | 12, 289 |
| BlpI | GCTNAGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 2 cut(s) | 13, 290 |
| BmcAI | AGTACT | 1 cut(s) | 421 |
| Bme1390I | CCNGG | 2 cut(s) | 447, 676 |
| BmiI | GGNNCC | 1 cut(s) | 680 |
| BmrFI | CCNGG | 2 cut(s) | 447, 676 |
| BmsI | GCATC | 1 cut(s) | 474 |
| BpiI | GAAGAC | 2 cut(s) | 114, 600 |
| Bpu10I | CCTNAGC | 1 cut(s) | 131 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 278 |
| BpuMI | CCSGG | 1 cut(s) | 447 |
| BsaJI | CCNNGG | 2 cut(s) | 6, 446 |
| BsaWI | WCCGGW | 1 cut(s) | 363 |
| Bse3DI | GCAATG | 1 cut(s) | 168 |
| BseBI | CCWGG | 1 cut(s) | 676 |
| BseDI | CCNNGG | 2 cut(s) | 6, 446 |
| BseGI | GGATG | 1 cut(s) | 253 |
| BseMI | GCAATG | 1 cut(s) | 168 |
| BseMII | CTCAG | 2 cut(s) | 145, 494 |
| BseXI | GCAGC | 2 cut(s) | 23, 275 |
| Bsh1285I | CGRYCG | 1 cut(s) | 433 |
| BshFI | GGCC | 4 cut(s) | 5, 359, 498, 674 |
| BsiEI | CGRYCG | 1 cut(s) | 433 |
| BsiHKAI | GWGCWC | 1 cut(s) | 57 |
| BsiSI | CCGG | 2 cut(s) | 364, 446 |
| BsnI | GGCC | 4 cut(s) | 5, 359, 498, 674 |
| Bsp1286I | GDGCHC | 1 cut(s) | 57 |
| Bsp143I | GATC | 3 cut(s) | 268, 508, 678 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 278 |
| BspACI | CCGC | 1 cut(s) | 389 |
| BspANI | GGCC | 4 cut(s) | 5, 359, 498, 674 |
| BspCNI | CTCAG | 2 cut(s) | 144, 493 |
| BspLI | GGNNCC | 1 cut(s) | 680 |
| BspPI | GGATC | 2 cut(s) | 673, 686 |
| BsrDI | GCAATG | 1 cut(s) | 168 |
| BssECI | CCNNGG | 2 cut(s) | 6, 446 |
| BssMI | GATC | 3 cut(s) | 268, 508, 678 |
| Bst2UI | CCWGG | 1 cut(s) | 676 |
| Bst4CI | ACNGT | 3 cut(s) | 335, 419, 434 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 288 |
| BstC8I | GCNNGC | 1 cut(s) | 500 |
| BstDEI | CTNAG | 4 cut(s) | 131, 278, 480, 581 |
| BstF5I | GGATG | 1 cut(s) | 253 |
| BstKTI | GATC | 3 cut(s) | 271, 511, 681 |
| BstMBI | GATC | 3 cut(s) | 268, 508, 678 |
| BstMCI | CGRYCG | 1 cut(s) | 433 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 288 |
| BstNI | CCWGG | 1 cut(s) | 676 |
| BstSCI | CCNGG | 2 cut(s) | 445, 674 |
| BstV1I | GCAGC | 2 cut(s) | 23, 275 |
| BstV2I | GAAGAC | 2 cut(s) | 114, 600 |
| BstX2I | RGATCY | 2 cut(s) | 508, 678 |
| BstYI | RGATCY | 2 cut(s) | 508, 678 |
| BsuI | GTATCC | 1 cut(s) | 702 |
| BsuRI | GGCC | 4 cut(s) | 5, 359, 498, 674 |
| BtsCI | GGATG | 1 cut(s) | 253 |
| BtsI | GCAGTG | 1 cut(s) | 576 |
| BtsIMutI | CAGTG | 1 cut(s) | 576 |
| Cac8I | GCNNGC | 1 cut(s) | 500 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 552, 587 |
| CviAII | CATG | 3 cut(s) | 15, 97, 292 |
| CviJI | RGCY | 9 cut(s) | 5, 232, 288, 359, 498, 502, 656, 674, 698 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 232, 288, 359, 498, 502, 656, 674, 698 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DdeI | CTNAG | 4 cut(s) | 131, 278, 480, 581 |
| DpnI | GATC | 3 cut(s) | 270, 510, 680 |
| DpnII | GATC | 3 cut(s) | 268, 508, 678 |
| DraIII | CACNNNGTG | 1 cut(s) | 61 |
| EaeI | YGGCCR | 2 cut(s) | 3, 496 |
| EcoRII | CCWGG | 1 cut(s) | 674 |
| EcoT22I | ATGCAT | 1 cut(s) | 98 |
| FaeI | CATG | 3 cut(s) | 18, 100, 295 |
| FatI | CATG | 3 cut(s) | 14, 96, 291 |
| FauNDI | CATATG | 1 cut(s) | 542 |
| Fnu4HI | GCNGC | 2 cut(s) | 12, 289 |
| FokI | GGATG | 1 cut(s) | 260 |
| Fsp4HI | GCNGC | 2 cut(s) | 12, 289 |
| FspBI | CTAG | 1 cut(s) | 703 |
| GluI | GCNGC | 2 cut(s) | 12, 289 |
| HaeIII | GGCC | 4 cut(s) | 5, 359, 498, 674 |
| HapII | CCGG | 2 cut(s) | 364, 446 |
| Hin1II | CATG | 3 cut(s) | 18, 100, 295 |
| HinfI | GANTC | 1 cut(s) | 202 |
| HpaII | CCGG | 2 cut(s) | 364, 446 |
| HphI | GGTGA | 1 cut(s) | 116 |
| Hpy188I | TCNGA | 1 cut(s) | 483 |
| Hpy188III | TCNNGA | 4 cut(s) | 133, 374, 401, 506 |
| HpyAV | CCTTC | 1 cut(s) | 94 |
| HpyCH4III | ACNGT | 3 cut(s) | 335, 419, 434 |
| HpyCH4V | TGCA | 6 cut(s) | 96, 116, 216, 291, 487, 651 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 288 |
| HpyF3I | CTNAG | 4 cut(s) | 131, 278, 480, 581 |
| Hsp92II | CATG | 3 cut(s) | 18, 100, 295 |
| Kzo9I | GATC | 3 cut(s) | 268, 508, 678 |
| LmnI | GCTCC | 1 cut(s) | 178 |
| Lsp1109I | GCAGC | 2 cut(s) | 23, 275 |
| LweI | GCATC | 1 cut(s) | 474 |
| MaeI | CTAG | 1 cut(s) | 703 |
| MaeIII | GTNAC | 2 cut(s) | 64, 311 |
| MalI | GATC | 3 cut(s) | 270, 510, 680 |
| MboI | GATC | 3 cut(s) | 268, 508, 678 |
| MboII | GAAGA | 5 cut(s) | 119, 148, 155, 503, 605 |
| MfeI | CAATTG | 1 cut(s) | 125 |
| MflI | RGATCY | 2 cut(s) | 508, 678 |
| MhlI | GDGCHC | 1 cut(s) | 57 |
| MlsI | TGGCCA | 1 cut(s) | 498 |
| MluCI | AATT | 3 cut(s) | 78, 125, 621 |
| MluNI | TGGCCA | 1 cut(s) | 498 |
| MnlI | CCTC | 4 cut(s) | 158, 205, 349, 664 |
| Mox20I | TGGCCA | 1 cut(s) | 498 |
| Mph1103I | ATGCAT | 1 cut(s) | 98 |
| MroXI | GAANNNNTTC | 2 cut(s) | 381, 396 |
| MscI | TGGCCA | 1 cut(s) | 498 |
| MslI | CAYNNNNRTG | 1 cut(s) | 519 |
| Msp20I | TGGCCA | 1 cut(s) | 498 |
| MspI | CCGG | 2 cut(s) | 364, 446 |
| MspR9I | CCNGG | 2 cut(s) | 447, 676 |
| MunI | CAATTG | 1 cut(s) | 125 |
| MvaI | CCWGG | 1 cut(s) | 676 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 288 |
| NciI | CCSGG | 1 cut(s) | 447 |
| NdeI | CATATG | 1 cut(s) | 542 |
| NdeII | GATC | 3 cut(s) | 268, 508, 678 |
| NlaIII | CATG | 3 cut(s) | 18, 100, 295 |
| NlaIV | GGNNCC | 1 cut(s) | 680 |
| NmeAIII | GCCGAG | 1 cut(s) | 31 |
| NsiI | ATGCAT | 1 cut(s) | 98 |
| PdmI | GAANNNNTTC | 2 cut(s) | 381, 396 |
| PfeI | GAWTC | 1 cut(s) | 202 |
| PkrI | GCNGC | 2 cut(s) | 13, 290 |
| PsiI | TTATAA | 1 cut(s) | 83 |
| Psp6I | CCWGG | 1 cut(s) | 674 |
| PspGI | CCWGG | 1 cut(s) | 674 |
| PspN4I | GGNNCC | 1 cut(s) | 680 |
| PsuI | RGATCY | 2 cut(s) | 508, 678 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| RseI | CAYNNNNRTG | 1 cut(s) | 519 |
| SatI | GCNGC | 2 cut(s) | 12, 289 |
| Sau3AI | GATC | 3 cut(s) | 268, 508, 678 |
| ScaI | AGTACT | 1 cut(s) | 421 |
| ScrFI | CCNGG | 2 cut(s) | 447, 676 |
| SduI | GDGCHC | 1 cut(s) | 57 |
| SetI | ASST | 8 cut(s) | 197, 234, 462, 493, 504, 521, 658, 704 |
| SfaNI | GCATC | 1 cut(s) | 474 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 519 |
| Sse9I | AATT | 3 cut(s) | 78, 125, 621 |
| SsiI | CCGC | 1 cut(s) | 389 |
| SspI | AATATT | 1 cut(s) | 616 |
| SspMI | CTAG | 1 cut(s) | 703 |
| StyD4I | CCNGG | 2 cut(s) | 445, 674 |
| TaaI | ACNGT | 3 cut(s) | 335, 419, 434 |
| TaqI | TCGA | 1 cut(s) | 429 |
| TasI | AATT | 3 cut(s) | 78, 125, 621 |
| TatI | WGTACW | 1 cut(s) | 419 |
| TfiI | GAWTC | 1 cut(s) | 202 |
| TscAI | CASTG | 1 cut(s) | 576 |
| TseI | GCWGC | 2 cut(s) | 11, 288 |
| TspDTI | ATGAA | 4 cut(s) | 113, 264, 342, 503 |
| TspRI | CASTG | 1 cut(s) | 576 |
| XmnI | GAANNNNTTC | 2 cut(s) | 381, 396 |
| XspI | CTAG | 1 cut(s) | 703 |
| ZrmI | AGTACT | 1 cut(s) | 421 |
| Zsp2I | ATGCAT | 1 cut(s) | 98 |