Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 4 - 37 | 2.7e-17 | PPR repeat |
| PPR_3 | PF13812 | 4 - 53 | 9.1e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 8 - 57 | 3.3e-17 | PPR repeat family |
| TPR_24 | PF23276 | 10 - 103 | 3.4e-10 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 11 - 40 | 1.1e-10 | PPR repeat |
| PPR_1 | PF12854 | 42 - 72 | 5.4e-06 | PPR repeat |
| PPR_3 | PF13812 | 67 - 123 | 1.1e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 76 - 103 | 4.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 8.6e-20 | PPR repeat family |
| PPR | PF01535 | 81 - 111 | 2.1e-06 | PPR repeat |
| TPR_24 | PF23276 | 93 - 193 | 5.9e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 108 - 158 | 3.2e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 109 - 141 | 3e-14 | PPR repeat |
| PPR | PF01535 | 117 - 146 | 9.7e-10 | PPR repeat |
| PPR_2 | PF13041 | 117 - 162 | 2.8e-16 | PPR repeat family |
| PPR_1 | PF12854 | 144 - 177 | 1.2e-06 | PPR repeat |
| PPR | PF01535 | 152 - 181 | 8.4e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 596 |
| AcuI | CTGAAG | 1 cut(s) | 417 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 11 |
| AgsI | TTSAA | 6 cut(s) | 137, 197, 263, 324, 521, 625 |
| AjnI | CCWGG | 1 cut(s) | 127 |
| AluBI | AGCT | 1 cut(s) | 278 |
| AluI | AGCT | 1 cut(s) | 278 |
| Alw26I | GTCTC | 2 cut(s) | 67, 420 |
| AlwI | GGATC | 1 cut(s) | 596 |
| AoxI | GGCC | 1 cut(s) | 160 |
| ApeKI | GCWGC | 1 cut(s) | 435 |
| AspS9I | GGNCC | 1 cut(s) | 453 |
| AvaII | GGWCC | 1 cut(s) | 453 |
| BbsI | GAAGAC | 3 cut(s) | 298, 312, 353 |
| BbvI | GCAGC | 1 cut(s) | 422 |
| BccI | CCATC | 4 cut(s) | 47, 152, 205, 440 |
| BceAI | ACGGC | 1 cut(s) | 204 |
| BciT130I | CCWGG | 1 cut(s) | 129 |
| BcoDI | GTCTC | 2 cut(s) | 67, 420 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| BisI | GCNGC | 1 cut(s) | 436 |
| BlsI | GCNGC | 1 cut(s) | 437 |
| Bme1390I | CCNGG | 1 cut(s) | 129 |
| Bme18I | GGWCC | 1 cut(s) | 453 |
| BmgT120I | GGNCC | 1 cut(s) | 453 |
| BmrFI | CCNGG | 1 cut(s) | 129 |
| BmsI | GCATC | 3 cut(s) | 96, 541, 563 |
| BpiI | GAAGAC | 3 cut(s) | 298, 312, 353 |
| BpmI | CTGGAG | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 2 cut(s) | 472, 588 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 11 |
| BseBI | CCWGG | 1 cut(s) | 129 |
| BseDI | CCNNGG | 2 cut(s) | 472, 588 |
| BseGI | GGATG | 1 cut(s) | 468 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 11 |
| BseMII | CTCAG | 2 cut(s) | 93, 404 |
| BseXI | GCAGC | 1 cut(s) | 422 |
| BseYI | CCCAGC | 1 cut(s) | 278 |
| BshFI | GGCC | 1 cut(s) | 162 |
| BsiSI | CCGG | 1 cut(s) | 605 |
| BslFI | GGGAC | 2 cut(s) | 27, 525 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 11 |
| BsmAI | GTCTC | 2 cut(s) | 67, 420 |
| BsmFI | GGGAC | 2 cut(s) | 27, 525 |
| BsnI | GGCC | 1 cut(s) | 162 |
| Bsp143I | GATC | 1 cut(s) | 601 |
| BspANI | GGCC | 1 cut(s) | 162 |
| BspCNI | CTCAG | 2 cut(s) | 94, 405 |
| BspHI | TCATGA | 1 cut(s) | 632 |
| BspMAI | CTGCAG | 1 cut(s) | 550 |
| BspPI | GGATC | 1 cut(s) | 596 |
| BssECI | CCNNGG | 2 cut(s) | 472, 588 |
| BssMI | GATC | 1 cut(s) | 601 |
| BssT1I | CCWWGG | 1 cut(s) | 588 |
| Bst2UI | CCWGG | 1 cut(s) | 129 |
| BstDEI | CTNAG | 4 cut(s) | 8, 102, 203, 413 |
| BstF5I | GGATG | 1 cut(s) | 468 |
| BstKTI | GATC | 1 cut(s) | 604 |
| BstMAI | GTCTC | 2 cut(s) | 67, 420 |
| BstMBI | GATC | 1 cut(s) | 601 |
| BstNI | CCWGG | 1 cut(s) | 129 |
| BstSCI | CCNGG | 1 cut(s) | 127 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstV1I | GCAGC | 1 cut(s) | 422 |
| BstV2I | GAAGAC | 3 cut(s) | 298, 312, 353 |
| BstX2I | RGATCY | 1 cut(s) | 601 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 450 |
| BstYI | RGATCY | 1 cut(s) | 601 |
| BsuRI | GGCC | 1 cut(s) | 162 |
| BtsCI | GGATG | 1 cut(s) | 468 |
| CciI | TCATGA | 1 cut(s) | 632 |
| Cfr13I | GGNCC | 1 cut(s) | 453 |
| CviAII | CATG | 3 cut(s) | 368, 501, 633 |
| CviJI | RGCY | 7 cut(s) | 162, 278, 337, 387, 435, 506, 608 |
| CviKI_1 | RGCY | 7 cut(s) | 162, 278, 337, 387, 435, 506, 608 |
| DdeI | CTNAG | 4 cut(s) | 8, 102, 203, 413 |
| DpnI | GATC | 1 cut(s) | 603 |
| DpnII | GATC | 1 cut(s) | 601 |
| Eco130I | CCWWGG | 1 cut(s) | 588 |
| Eco47I | GGWCC | 1 cut(s) | 453 |
| Eco57I | CTGAAG | 1 cut(s) | 417 |
| EcoRII | CCWGG | 1 cut(s) | 127 |
| EcoT14I | CCWWGG | 1 cut(s) | 588 |
| EcoT22I | ATGCAT | 1 cut(s) | 556 |
| ErhI | CCWWGG | 1 cut(s) | 588 |
| FaeI | CATG | 3 cut(s) | 371, 504, 636 |
| FaqI | GGGAC | 2 cut(s) | 27, 525 |
| FatI | CATG | 3 cut(s) | 367, 500, 632 |
| Fnu4HI | GCNGC | 1 cut(s) | 436 |
| FokI | GGATG | 1 cut(s) | 455 |
| Fsp4HI | GCNGC | 1 cut(s) | 436 |
| GluI | GCNGC | 1 cut(s) | 436 |
| GsaI | CCCAGC | 1 cut(s) | 282 |
| GsuI | CTGGAG | 1 cut(s) | 426 |
| HaeIII | GGCC | 1 cut(s) | 162 |
| HapII | CCGG | 1 cut(s) | 605 |
| Hin1II | CATG | 3 cut(s) | 371, 504, 636 |
| HincII | GTYRAC | 1 cut(s) | 122 |
| HindII | GTYRAC | 1 cut(s) | 122 |
| HinfI | GANTC | 3 cut(s) | 290, 364, 629 |
| HpaII | CCGG | 1 cut(s) | 605 |
| Hpy166II | GTNNAC | 2 cut(s) | 122, 247 |
| Hpy188I | TCNGA | 2 cut(s) | 103, 473 |
| Hpy188III | TCNNGA | 5 cut(s) | 23, 324, 443, 521, 633 |
| Hpy8I | GTNNAC | 2 cut(s) | 122, 247 |
| HpyAV | CCTTC | 2 cut(s) | 209, 257 |
| HpyCH4V | TGCA | 5 cut(s) | 109, 273, 296, 548, 554 |
| HpyF3I | CTNAG | 4 cut(s) | 8, 102, 203, 413 |
| Hsp92II | CATG | 3 cut(s) | 371, 504, 636 |
| Kzo9I | GATC | 1 cut(s) | 601 |
| LpnPI | CCDG | 8 cut(s) | 54, 114, 141, 176, 264, 297, 456, 618 |
| Lsp1109I | GCAGC | 1 cut(s) | 422 |
| LweI | GCATC | 3 cut(s) | 96, 541, 563 |
| MalI | GATC | 1 cut(s) | 603 |
| MboI | GATC | 1 cut(s) | 601 |
| MboII | GAAGA | 3 cut(s) | 298, 312, 358 |
| MfeI | CAATTG | 1 cut(s) | 192 |
| MflI | RGATCY | 1 cut(s) | 601 |
| MluCI | AATT | 3 cut(s) | 192, 197, 566 |
| MlyI | GAGTC | 1 cut(s) | 284 |
| MmeI | TCCRAC | 2 cut(s) | 207, 431 |
| MnlI | CCTC | 3 cut(s) | 15, 320, 467 |
| Mph1103I | ATGCAT | 1 cut(s) | 556 |
| MseI | TTAA | 2 cut(s) | 392, 482 |
| MspI | CCGG | 1 cut(s) | 605 |
| MspR9I | CCNGG | 1 cut(s) | 129 |
| MunI | CAATTG | 1 cut(s) | 192 |
| MvaI | CCWGG | 1 cut(s) | 129 |
| NdeII | GATC | 1 cut(s) | 601 |
| NlaIII | CATG | 3 cut(s) | 371, 504, 636 |
| NsiI | ATGCAT | 1 cut(s) | 556 |
| PagI | TCATGA | 1 cut(s) | 632 |
| PfeI | GAWTC | 2 cut(s) | 364, 629 |
| PkrI | GCNGC | 1 cut(s) | 437 |
| PleI | GAGTC | 1 cut(s) | 284 |
| PpsI | GAGTC | 1 cut(s) | 284 |
| Psp6I | CCWGG | 1 cut(s) | 127 |
| PspFI | CCCAGC | 1 cut(s) | 278 |
| PspGI | CCWGG | 1 cut(s) | 127 |
| PspPI | GGNCC | 1 cut(s) | 453 |
| PstI | CTGCAG | 1 cut(s) | 550 |
| PsuI | RGATCY | 1 cut(s) | 601 |
| SaqAI | TTAA | 2 cut(s) | 392, 482 |
| SatI | GCNGC | 1 cut(s) | 436 |
| Sau3AI | GATC | 1 cut(s) | 601 |
| Sau96I | GGNCC | 1 cut(s) | 453 |
| SchI | GAGTC | 1 cut(s) | 284 |
| ScrFI | CCNGG | 1 cut(s) | 129 |
| SetI | ASST | 5 cut(s) | 115, 133, 268, 280, 458 |
| SfaNI | GCATC | 3 cut(s) | 96, 541, 563 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SinI | GGWCC | 1 cut(s) | 453 |
| Sse9I | AATT | 3 cut(s) | 192, 197, 566 |
| SspI | AATATT | 2 cut(s) | 238, 253 |
| StyD4I | CCNGG | 1 cut(s) | 127 |
| StyI | CCWWGG | 1 cut(s) | 588 |
| TasI | AATT | 3 cut(s) | 192, 197, 566 |
| TfiI | GAWTC | 2 cut(s) | 364, 629 |
| Tru1I | TTAA | 2 cut(s) | 392, 482 |
| Tru9I | TTAA | 2 cut(s) | 392, 482 |
| TseI | GCWGC | 1 cut(s) | 435 |
| TspDTI | ATGAA | 3 cut(s) | 356, 507, 621 |
| VpaK11BI | GGWCC | 1 cut(s) | 453 |
| Zsp2I | ATGCAT | 1 cut(s) | 556 |