Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 79 - 124 | 5.1e-12 | PPR repeat family |
| PPR_3 | PF13812 | 98 - 158 | 7.9e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 109 - 140 | 3.7e-11 | PPR repeat |
| PPR_2 | PF13041 | 111 - 160 | 2.6e-13 | PPR repeat family |
| PPR_1 | PF12854 | 142 - 174 | 5.9e-07 | PPR repeat |
| PPR_2 | PF13041 | 146 - 195 | 1.8e-13 | PPR repeat family |
| PPR_3 | PF13812 | 170 - 229 | 2.7e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 177 - 209 | 3.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 181 - 230 | 2.3e-14 | PPR repeat family |
| MRP-S27 | PF10037 | 195 - 247 | 9.8e-06 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 212 - 244 | 1.1e-07 | PPR repeat |
| PPR_2 | PF13041 | 218 - 264 | 1.3e-11 | PPR repeat family |
| PPR_1 | PF12854 | 248 - 279 | 1.4e-09 | PPR repeat |
| PPR_2 | PF13041 | 251 - 300 | 4.8e-13 | PPR repeat family |
| PPR | PF01535 | 254 - 283 | 4.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 301 - 334 | 1.8e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 704 |
| AccIII | TCCGGA | 1 cut(s) | 541 |
| AciI | CCGC | 2 cut(s) | 392, 704 |
| AclI | AACGTT | 1 cut(s) | 1115 |
| AcoI | YGGCCR | 1 cut(s) | 949 |
| AcsI | RAATTY | 1 cut(s) | 294 |
| AcuI | CTGAAG | 1 cut(s) | 303 |
| AfaI | GTAC | 1 cut(s) | 1074 |
| AluBI | AGCT | 3 cut(s) | 12, 605, 1108 |
| AluI | AGCT | 3 cut(s) | 12, 605, 1108 |
| Aor13HI | TCCGGA | 1 cut(s) | 541 |
| AoxI | GGCC | 2 cut(s) | 589, 949 |
| ApeKI | GCWGC | 5 cut(s) | 9, 12, 15, 167, 287 |
| ApoI | RAATTY | 1 cut(s) | 294 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 179 |
| AspLEI | GCGC | 2 cut(s) | 9, 20 |
| AspS9I | GGNCC | 1 cut(s) | 590 |
| AsuHPI | GGTGA | 1 cut(s) | 216 |
| BalI | TGGCCA | 1 cut(s) | 951 |
| BanII | GRGCYC | 1 cut(s) | 851 |
| BbvI | GCAGC | 4 cut(s) | 21, 27, 154, 299 |
| BccI | CCATC | 6 cut(s) | 141, 370, 467, 691, 983, 1036 |
| BceAI | ACGGC | 1 cut(s) | 271 |
| BciVI | GTATCC | 1 cut(s) | 475 |
| BfmI | CTRYAG | 1 cut(s) | 13 |
| BfuI | GTATCC | 1 cut(s) | 475 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 176 |
| BglII | AGATCT | 1 cut(s) | 1131 |
| BisI | GCNGC | 6 cut(s) | 10, 13, 16, 168, 288, 393 |
| BlsI | GCNGC | 6 cut(s) | 11, 14, 17, 169, 289, 394 |
| BmgT120I | GGNCC | 1 cut(s) | 590 |
| BmiI | GGNNCC | 1 cut(s) | 850 |
| BmsI | GCATC | 3 cut(s) | 419, 487, 927 |
| BpuEI | CTTGAG | 1 cut(s) | 182 |
| BsaBI | GATNNNNATC | 1 cut(s) | 90 |
| BsaJI | CCNNGG | 2 cut(s) | 593, 852 |
| BsaWI | WCCGGW | 2 cut(s) | 67, 541 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 40, 70 |
| Bse1I | ACTGG | 1 cut(s) | 282 |
| Bse8I | GATNNNNATC | 1 cut(s) | 90 |
| BseAI | TCCGGA | 1 cut(s) | 541 |
| BseDI | CCNNGG | 2 cut(s) | 593, 852 |
| BseGI | GGATG | 5 cut(s) | 202, 340, 434, 625, 702 |
| BseJI | GATNNNNATC | 1 cut(s) | 90 |
| BseNI | ACTGG | 1 cut(s) | 282 |
| BseRI | GAGGAG | 1 cut(s) | 916 |
| BseXI | GCAGC | 4 cut(s) | 21, 27, 154, 299 |
| BseYI | CCCAGC | 2 cut(s) | 796, 1005 |
| Bsh1236I | CGCG | 1 cut(s) | 704 |
| BshFI | GGCC | 2 cut(s) | 591, 951 |
| BsiSI | CCGG | 4 cut(s) | 68, 332, 542, 617 |
| BslFI | GGGAC | 1 cut(s) | 425 |
| BsmFI | GGGAC | 1 cut(s) | 425 |
| BsnI | GGCC | 2 cut(s) | 591, 951 |
| Bsp1286I | GDGCHC | 1 cut(s) | 851 |
| Bsp13I | TCCGGA | 1 cut(s) | 541 |
| Bsp143I | GATC | 1 cut(s) | 1131 |
| Bsp19I | CCATGG | 1 cut(s) | 852 |
| BspACI | CCGC | 2 cut(s) | 392, 704 |
| BspANI | GGCC | 2 cut(s) | 591, 951 |
| BspEI | TCCGGA | 1 cut(s) | 541 |
| BspFNI | CGCG | 1 cut(s) | 704 |
| BspLI | GGNNCC | 1 cut(s) | 850 |
| BspMAI | CTGCAG | 1 cut(s) | 17 |
| BsrI | ACTGG | 1 cut(s) | 282 |
| BssECI | CCNNGG | 2 cut(s) | 593, 852 |
| BssMI | GATC | 1 cut(s) | 1131 |
| BssT1I | CCWWGG | 1 cut(s) | 852 |
| Bst4CI | ACNGT | 5 cut(s) | 470, 785, 791, 979, 996 |
| Bst6I | CTCTTC | 2 cut(s) | 515, 1141 |
| BstC8I | GCNNGC | 1 cut(s) | 353 |
| BstDEI | CTNAG | 2 cut(s) | 407, 514 |
| BstDSI | CCRYGG | 2 cut(s) | 593, 852 |
| BstF5I | GGATG | 5 cut(s) | 202, 340, 434, 625, 702 |
| BstFNI | CGCG | 1 cut(s) | 704 |
| BstHHI | GCGC | 2 cut(s) | 9, 20 |
| BstKTI | GATC | 1 cut(s) | 1134 |
| BstMBI | GATC | 1 cut(s) | 1131 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 15, 176, 287, 588 |
| BstSFI | CTRYAG | 1 cut(s) | 13 |
| BstUI | CGCG | 1 cut(s) | 704 |
| BstV1I | GCAGC | 4 cut(s) | 21, 27, 154, 299 |
| BstX2I | RGATCY | 1 cut(s) | 1131 |
| BstYI | RGATCY | 1 cut(s) | 1131 |
| BsuI | GTATCC | 1 cut(s) | 475 |
| BsuRI | GGCC | 2 cut(s) | 591, 951 |
| BtgI | CCRYGG | 2 cut(s) | 593, 852 |
| BtsCI | GGATG | 5 cut(s) | 202, 340, 434, 625, 702 |
| BtsI | GCAGTG | 1 cut(s) | 387 |
| BtsIMutI | CAGTG | 2 cut(s) | 236, 387 |
| Cac8I | GCNNGC | 1 cut(s) | 353 |
| CfoI | GCGC | 2 cut(s) | 9, 20 |
| Cfr13I | GGNCC | 1 cut(s) | 590 |
| CseI | GACGC | 1 cut(s) | 210 |
| Csp6I | GTAC | 1 cut(s) | 1073 |
| CviAII | CATG | 3 cut(s) | 373, 415, 853 |
| CviQI | GTAC | 1 cut(s) | 1073 |
| DdeI | CTNAG | 2 cut(s) | 407, 514 |
| DpnI | GATC | 1 cut(s) | 1133 |
| DpnII | GATC | 1 cut(s) | 1131 |
| EaeI | YGGCCR | 1 cut(s) | 949 |
| Eam1104I | CTCTTC | 2 cut(s) | 515, 1141 |
| EarI | CTCTTC | 2 cut(s) | 515, 1141 |
| Eco130I | CCWWGG | 1 cut(s) | 852 |
| Eco24I | GRGCYC | 1 cut(s) | 851 |
| Eco57I | CTGAAG | 1 cut(s) | 303 |
| EcoT14I | CCWWGG | 1 cut(s) | 852 |
| EcoT38I | GRGCYC | 1 cut(s) | 851 |
| ErhI | CCWWGG | 1 cut(s) | 852 |
| FaeI | CATG | 3 cut(s) | 376, 418, 856 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 914, 946 |
| FaqI | GGGAC | 1 cut(s) | 425 |
| FatI | CATG | 3 cut(s) | 372, 414, 852 |
| Fnu4HI | GCNGC | 6 cut(s) | 10, 13, 16, 168, 288, 393 |
| FokI | GGATG | 5 cut(s) | 189, 347, 441, 632, 709 |
| FriOI | GRGCYC | 1 cut(s) | 851 |
| Fsp4HI | GCNGC | 6 cut(s) | 10, 13, 16, 168, 288, 393 |
| GlaI | GCGC | 2 cut(s) | 8, 19 |
| GluI | GCNGC | 6 cut(s) | 10, 13, 16, 168, 288, 393 |
| GsaI | CCCAGC | 2 cut(s) | 800, 1009 |
| HaeIII | GGCC | 2 cut(s) | 591, 951 |
| HapII | CCGG | 4 cut(s) | 68, 332, 542, 617 |
| HgaI | GACGC | 1 cut(s) | 210 |
| HhaI | GCGC | 2 cut(s) | 9, 20 |
| Hin1II | CATG | 3 cut(s) | 376, 418, 856 |
| Hin6I | GCGC | 2 cut(s) | 7, 18 |
| HinP1I | GCGC | 2 cut(s) | 7, 18 |
| HincII | GTYRAC | 3 cut(s) | 73, 466, 859 |
| HindII | GTYRAC | 3 cut(s) | 73, 466, 859 |
| HinfI | GANTC | 2 cut(s) | 733, 1120 |
| HpaII | CCGG | 4 cut(s) | 68, 332, 542, 617 |
| HphI | GGTGA | 1 cut(s) | 216 |
| Hpy166II | GTNNAC | 4 cut(s) | 73, 342, 466, 859 |
| Hpy188I | TCNGA | 2 cut(s) | 648, 960 |
| Hpy188III | TCNNGA | 3 cut(s) | 123, 161, 542 |
| Hpy8I | GTNNAC | 4 cut(s) | 73, 342, 466, 859 |
| HpyAV | CCTTC | 5 cut(s) | 169, 222, 240, 670, 1087 |
| HpyCH4III | ACNGT | 5 cut(s) | 470, 785, 791, 979, 996 |
| HpyCH4IV | ACGT | 3 cut(s) | 546, 861, 1115 |
| HpyCH4V | TGCA | 9 cut(s) | 15, 372, 477, 500, 582, 897, 940, 1103, 1126 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 15, 176, 287, 588 |
| HpyF3I | CTNAG | 2 cut(s) | 407, 514 |
| HpySE526I | ACGT | 3 cut(s) | 546, 861, 1115 |
| Hsp92II | CATG | 3 cut(s) | 376, 418, 856 |
| HspAI | GCGC | 2 cut(s) | 7, 18 |
| Kpn2I | TCCGGA | 1 cut(s) | 541 |
| Kzo9I | GATC | 1 cut(s) | 1131 |
| LmnI | GCTCC | 2 cut(s) | 544, 854 |
| Lsp1109I | GCAGC | 4 cut(s) | 21, 27, 154, 299 |
| LweI | GCATC | 3 cut(s) | 419, 487, 927 |
| MaeII | ACGT | 3 cut(s) | 546, 861, 1115 |
| MaeIII | GTNAC | 6 cut(s) | 222, 380, 402, 550, 785, 998 |
| MalI | GATC | 1 cut(s) | 1133 |
| MboI | GATC | 1 cut(s) | 1131 |
| MboII | GAAGA | 5 cut(s) | 32, 207, 431, 502, 1128 |
| MflI | RGATCY | 1 cut(s) | 1131 |
| MhlI | GDGCHC | 1 cut(s) | 851 |
| MlsI | TGGCCA | 1 cut(s) | 951 |
| MluCI | AATT | 7 cut(s) | 76, 294, 501, 583, 906, 1028, 1055 |
| MluNI | TGGCCA | 1 cut(s) | 951 |
| MnlI | CCTC | 9 cut(s) | 17, 115, 157, 216, 307, 311, 518, 524, 894 |
| Mox20I | TGGCCA | 1 cut(s) | 951 |
| MroI | TCCGGA | 1 cut(s) | 541 |
| MroXI | GAANNNNTTC | 1 cut(s) | 179 |
| MscI | TGGCCA | 1 cut(s) | 951 |
| MseI | TTAA | 3 cut(s) | 504, 909, 1035 |
| Msp20I | TGGCCA | 1 cut(s) | 951 |
| MspA1I | CMGCKG | 1 cut(s) | 12 |
| MspI | CCGG | 4 cut(s) | 68, 332, 542, 617 |
| MvnI | CGCG | 1 cut(s) | 704 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 15, 176, 287, 588 |
| NcoI | CCATGG | 1 cut(s) | 852 |
| NdeII | GATC | 1 cut(s) | 1131 |
| NlaIII | CATG | 3 cut(s) | 376, 418, 856 |
| NlaIV | GGNNCC | 1 cut(s) | 850 |
| NmuCI | GTSAC | 1 cut(s) | 222 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 812 |
| PdmI | GAANNNNTTC | 1 cut(s) | 179 |
| PfeI | GAWTC | 2 cut(s) | 733, 1120 |
| PkrI | GCNGC | 6 cut(s) | 11, 14, 17, 169, 289, 394 |
| Psp1406I | AACGTT | 1 cut(s) | 1115 |
| PspFI | CCCAGC | 2 cut(s) | 796, 1005 |
| PspN4I | GGNNCC | 1 cut(s) | 850 |
| PspPI | GGNCC | 1 cut(s) | 590 |
| PstI | CTGCAG | 1 cut(s) | 17 |
| PsuI | RGATCY | 1 cut(s) | 1131 |
| PvuII | CAGCTG | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 1074 |
| RsaNI | GTAC | 1 cut(s) | 1073 |
| SaqAI | TTAA | 3 cut(s) | 504, 909, 1035 |
| SatI | GCNGC | 6 cut(s) | 10, 13, 16, 168, 288, 393 |
| Sau3AI | GATC | 1 cut(s) | 1131 |
| Sau96I | GGNCC | 1 cut(s) | 590 |
| SduI | GDGCHC | 1 cut(s) | 851 |
| SfaNI | GCATC | 3 cut(s) | 419, 487, 927 |
| SfcI | CTRYAG | 1 cut(s) | 13 |
| SmlI | CTYRAG | 1 cut(s) | 161 |
| SmoI | CTYRAG | 1 cut(s) | 161 |
| Sse9I | AATT | 7 cut(s) | 76, 294, 501, 583, 906, 1028, 1055 |
| SsiI | CCGC | 2 cut(s) | 392, 704 |
| StyI | CCWWGG | 1 cut(s) | 852 |
| TaaI | ACNGT | 5 cut(s) | 470, 785, 791, 979, 996 |
| TaiI | ACGT | 3 cut(s) | 549, 864, 1118 |
| TaqI | TCGA | 5 cut(s) | 136, 142, 274, 675, 1026 |
| TasI | AATT | 7 cut(s) | 76, 294, 501, 583, 906, 1028, 1055 |
| TatI | WGTACW | 1 cut(s) | 1072 |
| TauI | GCSGC | 1 cut(s) | 395 |
| TfiI | GAWTC | 2 cut(s) | 733, 1120 |
| Tru1I | TTAA | 3 cut(s) | 504, 909, 1035 |
| Tru9I | TTAA | 3 cut(s) | 504, 909, 1035 |
| TscAI | CASTG | 2 cut(s) | 243, 394 |
| TseFI | GTSAC | 1 cut(s) | 222 |
| TseI | GCWGC | 5 cut(s) | 9, 12, 15, 167, 287 |
| Tsp45I | GTSAC | 1 cut(s) | 222 |
| TspDTI | ATGAA | 3 cut(s) | 17, 636, 854 |
| TspGWI | ACGGA | 1 cut(s) | 821 |
| TspRI | CASTG | 2 cut(s) | 243, 394 |
| XapI | RAATTY | 1 cut(s) | 294 |
| XmnI | GAANNNNTTC | 1 cut(s) | 179 |