Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dimer_Tnp_hAT | PF05699 | 94 - 171 | 3.2e-12 | hAT family C-terminal dimerisation region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 318 |
| Acc16I | TGCGCA | 1 cut(s) | 298 |
| AccIII | TCCGGA | 1 cut(s) | 410 |
| AciI | CCGC | 1 cut(s) | 95 |
| AclWI | GGATC | 3 cut(s) | 439, 452, 670 |
| AcsI | RAATTY | 2 cut(s) | 711, 833 |
| AfaI | GTAC | 2 cut(s) | 357, 810 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 69, 597 |
| AgsI | TTSAA | 7 cut(s) | 10, 109, 135, 209, 253, 511, 716 |
| AhlI | ACTAGT | 1 cut(s) | 641 |
| AluBI | AGCT | 4 cut(s) | 23, 405, 581, 687 |
| AluI | AGCT | 4 cut(s) | 23, 405, 581, 687 |
| Alw21I | GWGCWC | 1 cut(s) | 434 |
| AlwI | GGATC | 3 cut(s) | 439, 452, 670 |
| Aor13HI | TCCGGA | 1 cut(s) | 410 |
| AoxI | GGCC | 1 cut(s) | 588 |
| ApoI | RAATTY | 2 cut(s) | 711, 833 |
| AspA2I | CCTAGG | 1 cut(s) | 695 |
| AspLEI | GCGC | 1 cut(s) | 299 |
| AspS9I | GGNCC | 1 cut(s) | 589 |
| AsuC2I | CCSGG | 1 cut(s) | 291 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 626 |
| AvrII | CCTAGG | 1 cut(s) | 695 |
| BamHI | GGATCC | 1 cut(s) | 444 |
| Bbv12I | GWGCWC | 1 cut(s) | 434 |
| BccI | CCATC | 4 cut(s) | 158, 254, 591, 602 |
| BciVI | GTATCC | 1 cut(s) | 378 |
| BcnI | CCSGG | 1 cut(s) | 291 |
| BcuI | ACTAGT | 1 cut(s) | 641 |
| BfaI | CTAG | 5 cut(s) | 470, 569, 642, 696, 812 |
| BfuI | GTATCC | 1 cut(s) | 378 |
| BlnI | CCTAGG | 1 cut(s) | 695 |
| BlpI | GCTNAGC | 1 cut(s) | 285 |
| BmcAI | AGTACT | 1 cut(s) | 810 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| BmgT120I | GGNCC | 1 cut(s) | 589 |
| BmiI | GGNNCC | 1 cut(s) | 446 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmsI | GCATC | 1 cut(s) | 284 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 285 |
| BpuMI | CCSGG | 1 cut(s) | 291 |
| BsaBI | GATNNNNATC | 1 cut(s) | 633 |
| BsaJI | CCNNGG | 3 cut(s) | 64, 592, 695 |
| BsaWI | WCCGGW | 2 cut(s) | 322, 410 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 691, 721 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 69, 597 |
| Bse3DI | GCAATG | 1 cut(s) | 83 |
| Bse8I | GATNNNNATC | 1 cut(s) | 633 |
| BseAI | TCCGGA | 1 cut(s) | 410 |
| BseDI | CCNNGG | 3 cut(s) | 64, 592, 695 |
| BseGI | GGATG | 9 cut(s) | 169, 299, 407, 419, 565, 602, 613, 745, 760 |
| BseJI | GATNNNNATC | 1 cut(s) | 633 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 69, 597 |
| BseMI | GCAATG | 1 cut(s) | 83 |
| BseRI | GAGGAG | 1 cut(s) | 815 |
| BshFI | GGCC | 1 cut(s) | 590 |
| BsiHKAI | GWGCWC | 1 cut(s) | 434 |
| BsiSI | CCGG | 3 cut(s) | 290, 323, 411 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 69, 597 |
| BsmI | GAATGC | 1 cut(s) | 5 |
| BsnI | GGCC | 1 cut(s) | 590 |
| Bsp1286I | GDGCHC | 1 cut(s) | 434 |
| Bsp13I | TCCGGA | 1 cut(s) | 410 |
| Bsp143I | GATC | 4 cut(s) | 13, 444, 634, 662 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 285 |
| BspACI | CCGC | 1 cut(s) | 95 |
| BspANI | GGCC | 1 cut(s) | 590 |
| BspEI | TCCGGA | 1 cut(s) | 410 |
| BspHI | TCATGA | 1 cut(s) | 733 |
| BspLI | GGNNCC | 1 cut(s) | 446 |
| BspPI | GGATC | 3 cut(s) | 439, 452, 670 |
| BsrDI | GCAATG | 1 cut(s) | 83 |
| BssECI | CCNNGG | 3 cut(s) | 64, 592, 695 |
| BssMI | GATC | 4 cut(s) | 13, 444, 634, 662 |
| BssT1I | CCWWGG | 2 cut(s) | 592, 695 |
| Bst6I | CTCTTC | 2 cut(s) | 527, 753 |
| BstDEI | CTNAG | 2 cut(s) | 285, 688 |
| BstDSI | CCRYGG | 1 cut(s) | 64 |
| BstEII | GGTNACC | 2 cut(s) | 98, 347 |
| BstF5I | GGATG | 9 cut(s) | 169, 299, 407, 419, 565, 602, 613, 745, 760 |
| BstHHI | GCGC | 1 cut(s) | 299 |
| BstKTI | GATC | 4 cut(s) | 16, 447, 637, 665 |
| BstMBI | GATC | 4 cut(s) | 13, 444, 634, 662 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 578, 587 |
| BstNSI | RCATGY | 1 cut(s) | 576 |
| BstPI | GGTNACC | 2 cut(s) | 98, 347 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstX2I | RGATCY | 1 cut(s) | 444 |
| BstYI | RGATCY | 1 cut(s) | 444 |
| BsuI | GTATCC | 1 cut(s) | 378 |
| BsuRI | GGCC | 1 cut(s) | 590 |
| BtgI | CCRYGG | 1 cut(s) | 64 |
| BtsCI | GGATG | 9 cut(s) | 169, 299, 407, 419, 565, 602, 613, 745, 760 |
| CciI | TCATGA | 1 cut(s) | 733 |
| CfoI | GCGC | 1 cut(s) | 299 |
| Cfr13I | GGNCC | 1 cut(s) | 589 |
| Csp6I | GTAC | 2 cut(s) | 356, 809 |
| CviAII | CATG | 3 cut(s) | 160, 573, 734 |
| CviQI | GTAC | 2 cut(s) | 356, 809 |
| DdeI | CTNAG | 2 cut(s) | 285, 688 |
| DpnI | GATC | 4 cut(s) | 15, 446, 636, 664 |
| DpnII | GATC | 4 cut(s) | 13, 444, 634, 662 |
| Eam1104I | CTCTTC | 2 cut(s) | 527, 753 |
| EarI | CTCTTC | 2 cut(s) | 527, 753 |
| Eco130I | CCWWGG | 2 cut(s) | 592, 695 |
| Eco91I | GGTNACC | 2 cut(s) | 98, 347 |
| EcoO65I | GGTNACC | 2 cut(s) | 98, 347 |
| EcoRI | GAATTC | 1 cut(s) | 711 |
| EcoT14I | CCWWGG | 2 cut(s) | 592, 695 |
| ErhI | CCWWGG | 2 cut(s) | 592, 695 |
| FaeI | CATG | 3 cut(s) | 163, 576, 737 |
| FatI | CATG | 3 cut(s) | 159, 572, 733 |
| FauI | CCCGC | 1 cut(s) | 88 |
| FauNDI | CATATG | 1 cut(s) | 124 |
| FokI | GGATG | 9 cut(s) | 176, 306, 394, 426, 572, 609, 620, 752, 767 |
| FspAI | RTGCGCAY | 1 cut(s) | 298 |
| FspBI | CTAG | 5 cut(s) | 470, 569, 642, 696, 812 |
| FspI | TGCGCA | 1 cut(s) | 298 |
| GlaI | GCGC | 1 cut(s) | 298 |
| HaeIII | GGCC | 1 cut(s) | 590 |
| HapII | CCGG | 3 cut(s) | 290, 323, 411 |
| HhaI | GCGC | 1 cut(s) | 299 |
| Hin1II | CATG | 3 cut(s) | 163, 576, 737 |
| Hin6I | GCGC | 1 cut(s) | 297 |
| HinP1I | GCGC | 1 cut(s) | 297 |
| HinfI | GANTC | 3 cut(s) | 520, 629, 791 |
| HpaII | CCGG | 3 cut(s) | 290, 323, 411 |
| HphI | GGTGA | 2 cut(s) | 235, 626 |
| Hpy188I | TCNGA | 3 cut(s) | 634, 754, 796 |
| Hpy188III | TCNNGA | 7 cut(s) | 17, 106, 197, 411, 666, 716, 734 |
| HpyCH4V | TGCA | 4 cut(s) | 88, 241, 367, 392 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 578, 587 |
| HpyF3I | CTNAG | 2 cut(s) | 285, 688 |
| Hsp92II | CATG | 3 cut(s) | 163, 576, 737 |
| HspAI | GCGC | 1 cut(s) | 297 |
| Kpn2I | TCCGGA | 1 cut(s) | 410 |
| Kzo9I | GATC | 4 cut(s) | 13, 444, 634, 662 |
| LmnI | GCTCC | 1 cut(s) | 429 |
| LpnPI | CCDG | 4 cut(s) | 303, 336, 424, 651 |
| LweI | GCATC | 1 cut(s) | 284 |
| MaeI | CTAG | 5 cut(s) | 470, 569, 642, 696, 812 |
| MaeIII | GTNAC | 3 cut(s) | 98, 223, 347 |
| MalI | GATC | 4 cut(s) | 15, 446, 636, 664 |
| MboI | GATC | 4 cut(s) | 13, 444, 634, 662 |
| MflI | RGATCY | 1 cut(s) | 444 |
| MhlI | GDGCHC | 1 cut(s) | 434 |
| MmeI | TCCRAC | 1 cut(s) | 634 |
| MroI | TCCGGA | 1 cut(s) | 410 |
| MseI | TTAA | 1 cut(s) | 485 |
| MslI | CAYNNNNRTG | 2 cut(s) | 412, 738 |
| MspI | CCGG | 3 cut(s) | 290, 323, 411 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| Mva1269I | GAATGC | 1 cut(s) | 5 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 578, 587 |
| NciI | CCSGG | 1 cut(s) | 291 |
| NdeI | CATATG | 1 cut(s) | 124 |
| NdeII | GATC | 4 cut(s) | 13, 444, 634, 662 |
| NlaIII | CATG | 3 cut(s) | 163, 576, 737 |
| NlaIV | GGNNCC | 1 cut(s) | 446 |
| NmuCI | GTSAC | 1 cut(s) | 223 |
| NsbI | TGCGCA | 1 cut(s) | 298 |
| NspI | RCATGY | 1 cut(s) | 576 |
| PagI | TCATGA | 1 cut(s) | 733 |
| PctI | GAATGC | 1 cut(s) | 5 |
| PfeI | GAWTC | 3 cut(s) | 520, 629, 791 |
| PsiI | TTATAA | 1 cut(s) | 318 |
| PspEI | GGTNACC | 2 cut(s) | 98, 347 |
| PspN4I | GGNNCC | 1 cut(s) | 446 |
| PspPI | GGNCC | 1 cut(s) | 589 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 101, 133 |
| PsuI | RGATCY | 1 cut(s) | 444 |
| RsaI | GTAC | 2 cut(s) | 357, 810 |
| RsaNI | GTAC | 2 cut(s) | 356, 809 |
| RseI | CAYNNNNRTG | 2 cut(s) | 412, 738 |
| SaqAI | TTAA | 1 cut(s) | 485 |
| Sau3AI | GATC | 4 cut(s) | 13, 444, 634, 662 |
| Sau96I | GGNCC | 1 cut(s) | 589 |
| ScaI | AGTACT | 1 cut(s) | 810 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SduI | GDGCHC | 1 cut(s) | 434 |
| SetI | ASST | 8 cut(s) | 25, 105, 189, 354, 407, 485, 583, 689 |
| SfaNI | GCATC | 1 cut(s) | 284 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 412, 738 |
| SpeI | ACTAGT | 1 cut(s) | 641 |
| SsiI | CCGC | 1 cut(s) | 95 |
| SspI | AATATT | 1 cut(s) | 340 |
| SspMI | CTAG | 5 cut(s) | 470, 569, 642, 696, 812 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| StyI | CCWWGG | 2 cut(s) | 592, 695 |
| TatI | WGTACW | 1 cut(s) | 808 |
| TfiI | GAWTC | 3 cut(s) | 520, 629, 791 |
| Tru1I | TTAA | 1 cut(s) | 485 |
| Tru9I | TTAA | 1 cut(s) | 485 |
| TseFI | GTSAC | 1 cut(s) | 223 |
| Tsp45I | GTSAC | 1 cut(s) | 223 |
| TspDTI | ATGAA | 4 cut(s) | 557, 633, 722, 771 |
| XapI | RAATTY | 2 cut(s) | 711, 833 |
| XceI | RCATGY | 1 cut(s) | 576 |
| XmaJI | CCTAGG | 1 cut(s) | 695 |
| XspI | CTAG | 5 cut(s) | 470, 569, 642, 696, 812 |
| ZrmI | AGTACT | 1 cut(s) | 810 |