Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 115 - 147 | 4.2e-07 | PPR repeat |
| PPR_3 | PF13812 | 115 - 163 | 9.5e-10 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 118 - 166 | 2.5e-15 | PPR repeat family |
| PPR_3 | PF13812 | 142 - 198 | 6.9e-14 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 150 - 182 | 2e-09 | PPR repeat |
| PPR_2 | PF13041 | 160 - 202 | 1.7e-08 | PPR repeat family |
| PPR_1 | PF12854 | 186 - 216 | 3.1e-09 | PPR repeat |
| PPR_2 | PF13041 | 188 - 236 | 3.5e-15 | PPR repeat family |
| PPR_long | PF17177 | 189 - 287 | 2.4e-07 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 210 - 291 | 3.3e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 212 - 270 | 6.3e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 219 - 252 | 4.7e-10 | PPR repeat |
| PPR_2 | PF13041 | 225 - 272 | 2.8e-14 | PPR repeat family |
| PPR_1 | PF12854 | 255 - 286 | 5.7e-09 | PPR repeat |
| PPR_2 | PF13041 | 262 - 302 | 3.8e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 782 |
| Acc36I | ACCTGC | 1 cut(s) | 437 |
| AccI | GTMKAC | 2 cut(s) | 66, 198 |
| AccII | CGCG | 1 cut(s) | 626 |
| AciI | CCGC | 1 cut(s) | 190 |
| AcuI | CTGAAG | 1 cut(s) | 432 |
| AfaI | GTAC | 2 cut(s) | 37, 305 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 341 |
| AflIII | ACRYGT | 1 cut(s) | 624 |
| AgsI | TTSAA | 7 cut(s) | 215, 277, 350, 527, 631, 745, 790 |
| AluBI | AGCT | 3 cut(s) | 410, 521, 731 |
| AluI | AGCT | 3 cut(s) | 410, 521, 731 |
| AoxI | GGCC | 2 cut(s) | 78, 132 |
| ApeKI | GCWGC | 6 cut(s) | 18, 21, 24, 416, 419, 518 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 244, 276 |
| AseI | ATTAAT | 1 cut(s) | 696 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 210, 635 |
| AspLEI | GCGC | 2 cut(s) | 18, 783 |
| AspS9I | GGNCC | 2 cut(s) | 79, 133 |
| AsuHPI | GGTGA | 5 cut(s) | 16, 352, 361, 655, 766 |
| BauI | CACGAG | 1 cut(s) | 266 |
| BbvI | GCAGC | 6 cut(s) | 5, 33, 36, 428, 431, 530 |
| BccI | CCATC | 4 cut(s) | 302, 535, 593, 817 |
| BceAI | ACGGC | 2 cut(s) | 47, 400 |
| BfmI | CTRYAG | 1 cut(s) | 19 |
| BfuAI | ACCTGC | 1 cut(s) | 437 |
| BisI | GCNGC | 6 cut(s) | 19, 22, 25, 417, 420, 519 |
| BlsI | GCNGC | 6 cut(s) | 20, 23, 26, 418, 421, 520 |
| BmgT120I | GGNCC | 2 cut(s) | 79, 133 |
| BmsI | GCATC | 5 cut(s) | 3, 175, 507, 598, 793 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 341 |
| BseGI | GGATG | 2 cut(s) | 613, 828 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 341 |
| BseMII | CTCAG | 2 cut(s) | 547, 654 |
| BseXI | GCAGC | 6 cut(s) | 5, 33, 36, 428, 431, 530 |
| Bsh1236I | CGCG | 1 cut(s) | 626 |
| BshFI | GGCC | 2 cut(s) | 80, 134 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 341 |
| BsnI | GGCC | 2 cut(s) | 80, 134 |
| Bsp143I | GATC | 1 cut(s) | 942 |
| BspACI | CCGC | 1 cut(s) | 190 |
| BspANI | GGCC | 2 cut(s) | 80, 134 |
| BspCNI | CTCAG | 2 cut(s) | 546, 653 |
| BspFNI | CGCG | 1 cut(s) | 626 |
| BspMAI | CTGCAG | 1 cut(s) | 23 |
| BspMI | ACCTGC | 1 cut(s) | 437 |
| BssMI | GATC | 1 cut(s) | 942 |
| BssSI | CACGAG | 1 cut(s) | 266 |
| Bst2BI | CACGAG | 1 cut(s) | 266 |
| Bst4CI | ACNGT | 4 cut(s) | 596, 673, 884, 905 |
| BstC8I | GCNNGC | 2 cut(s) | 190, 834 |
| BstDEI | CTNAG | 2 cut(s) | 533, 640 |
| BstF5I | GGATG | 2 cut(s) | 613, 828 |
| BstFNI | CGCG | 1 cut(s) | 626 |
| BstHHI | GCGC | 2 cut(s) | 18, 783 |
| BstKTI | GATC | 1 cut(s) | 945 |
| BstMBI | GATC | 1 cut(s) | 942 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 24, 322, 416 |
| BstSFI | CTRYAG | 1 cut(s) | 19 |
| BstUI | CGCG | 1 cut(s) | 626 |
| BstV1I | GCAGC | 6 cut(s) | 5, 33, 36, 428, 431, 530 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 130 |
| BsuRI | GGCC | 2 cut(s) | 80, 134 |
| BtsCI | GGATG | 2 cut(s) | 613, 828 |
| BveI | ACCTGC | 1 cut(s) | 437 |
| Cac8I | GCNNGC | 2 cut(s) | 190, 834 |
| CfoI | GCGC | 2 cut(s) | 18, 783 |
| Cfr13I | GGNCC | 2 cut(s) | 79, 133 |
| CseI | GACGC | 2 cut(s) | 305, 632 |
| Csp6I | GTAC | 2 cut(s) | 36, 304 |
| CviQI | GTAC | 2 cut(s) | 36, 304 |
| DdeI | CTNAG | 2 cut(s) | 533, 640 |
| DpnI | GATC | 1 cut(s) | 944 |
| DpnII | GATC | 1 cut(s) | 942 |
| Eco57I | CTGAAG | 1 cut(s) | 432 |
| FaiI | YATR | 3 cut(s) | 579, 620, 893 |
| FauI | CCCGC | 1 cut(s) | 197 |
| FblI | GTMKAC | 2 cut(s) | 66, 198 |
| Fnu4HI | GCNGC | 6 cut(s) | 19, 22, 25, 417, 420, 519 |
| FokI | GGATG | 2 cut(s) | 620, 835 |
| Fsp4HI | GCNGC | 6 cut(s) | 19, 22, 25, 417, 420, 519 |
| FspAI | RTGCGCAY | 1 cut(s) | 782 |
| FspI | TGCGCA | 1 cut(s) | 782 |
| GlaI | GCGC | 2 cut(s) | 17, 782 |
| GluI | GCNGC | 6 cut(s) | 19, 22, 25, 417, 420, 519 |
| HaeIII | GGCC | 2 cut(s) | 80, 134 |
| HgaI | GACGC | 2 cut(s) | 305, 632 |
| HhaI | GCGC | 2 cut(s) | 18, 783 |
| Hin6I | GCGC | 2 cut(s) | 16, 781 |
| HinP1I | GCGC | 2 cut(s) | 16, 781 |
| HincII | GTYRAC | 2 cut(s) | 67, 263 |
| HindII | GTYRAC | 2 cut(s) | 67, 263 |
| HinfI | GANTC | 4 cut(s) | 757, 847, 859, 873 |
| HphI | GGTGA | 5 cut(s) | 16, 352, 361, 655, 766 |
| Hpy166II | GTNNAC | 4 cut(s) | 67, 199, 245, 263 |
| Hpy188I | TCNGA | 7 cut(s) | 103, 289, 399, 536, 643, 852, 947 |
| Hpy188III | TCNNGA | 5 cut(s) | 117, 268, 335, 347, 773 |
| Hpy8I | GTNNAC | 4 cut(s) | 67, 199, 245, 263 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 321 |
| HpyAV | CCTTC | 6 cut(s) | 23, 376, 481, 648, 796, 812 |
| HpyCH4III | ACNGT | 4 cut(s) | 596, 673, 884, 905 |
| HpyCH4V | TGCA | 5 cut(s) | 21, 498, 518, 611, 806 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 24, 322, 416 |
| HpyF3I | CTNAG | 2 cut(s) | 533, 640 |
| HspAI | GCGC | 2 cut(s) | 16, 781 |
| Kzo9I | GATC | 1 cut(s) | 942 |
| LmnI | GCTCC | 1 cut(s) | 829 |
| LpnPI | CCDG | 6 cut(s) | 72, 130, 149, 348, 432, 786 |
| Lsp1109I | GCAGC | 6 cut(s) | 5, 33, 36, 428, 431, 530 |
| LweI | GCATC | 5 cut(s) | 3, 175, 507, 598, 793 |
| MaeIII | GTNAC | 4 cut(s) | 358, 466, 506, 899 |
| MalI | GATC | 1 cut(s) | 944 |
| MboI | GATC | 1 cut(s) | 942 |
| MluCI | AATT | 6 cut(s) | 112, 272, 327, 423, 527, 615 |
| MluI | ACGCGT | 1 cut(s) | 624 |
| MlyI | GAGTC | 2 cut(s) | 766, 868 |
| MnlI | CCTC | 6 cut(s) | 26, 109, 234, 241, 258, 436 |
| MroXI | GAANNNNTTC | 2 cut(s) | 210, 635 |
| MseI | TTAA | 2 cut(s) | 603, 696 |
| MslI | CAYNNNNRTG | 1 cut(s) | 482 |
| MvnI | CGCG | 1 cut(s) | 626 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 24, 322, 416 |
| NdeII | GATC | 1 cut(s) | 942 |
| NmuCI | GTSAC | 2 cut(s) | 358, 466 |
| NsbI | TGCGCA | 1 cut(s) | 782 |
| PdmI | GAANNNNTTC | 2 cut(s) | 210, 635 |
| PfeI | GAWTC | 2 cut(s) | 847, 873 |
| PkrI | GCNGC | 6 cut(s) | 20, 23, 26, 418, 421, 520 |
| PleI | GAGTC | 2 cut(s) | 765, 867 |
| PpsI | GAGTC | 2 cut(s) | 765, 867 |
| PshBI | ATTAAT | 1 cut(s) | 696 |
| PspPI | GGNCC | 2 cut(s) | 79, 133 |
| PstI | CTGCAG | 1 cut(s) | 23 |
| RsaI | GTAC | 2 cut(s) | 37, 305 |
| RsaNI | GTAC | 2 cut(s) | 36, 304 |
| RseI | CAYNNNNRTG | 1 cut(s) | 482 |
| SalI | GTCGAC | 1 cut(s) | 65 |
| SaqAI | TTAA | 2 cut(s) | 603, 696 |
| SatI | GCNGC | 6 cut(s) | 19, 22, 25, 417, 420, 519 |
| Sau3AI | GATC | 1 cut(s) | 942 |
| Sau96I | GGNCC | 2 cut(s) | 79, 133 |
| SchI | GAGTC | 2 cut(s) | 766, 868 |
| SfaNI | GCATC | 5 cut(s) | 3, 175, 507, 598, 793 |
| SfcI | CTRYAG | 1 cut(s) | 19 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 482 |
| Sse9I | AATT | 6 cut(s) | 112, 272, 327, 423, 527, 615 |
| SsiI | CCGC | 1 cut(s) | 190 |
| TaaI | ACNGT | 4 cut(s) | 596, 673, 884, 905 |
| TaqI | TCGA | 2 cut(s) | 66, 920 |
| TasI | AATT | 6 cut(s) | 112, 272, 327, 423, 527, 615 |
| TfiI | GAWTC | 2 cut(s) | 847, 873 |
| Tru1I | TTAA | 2 cut(s) | 603, 696 |
| Tru9I | TTAA | 2 cut(s) | 603, 696 |
| TseFI | GTSAC | 2 cut(s) | 358, 466 |
| TseI | GCWGC | 6 cut(s) | 18, 21, 24, 416, 419, 518 |
| Tsp45I | GTSAC | 2 cut(s) | 358, 466 |
| TspDTI | ATGAA | 5 cut(s) | 219, 500, 714, 762, 908 |
| TspGWI | ACGGA | 1 cut(s) | 230 |
| VspI | ATTAAT | 1 cut(s) | 696 |
| XmiI | GTMKAC | 2 cut(s) | 66, 198 |
| XmnI | GAANNNNTTC | 2 cut(s) | 210, 635 |