pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 63 - 101 | 1.4e-09 | PPR repeat family |
| PPR_long | PF17177 | 70 - 162 | 4.1e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 76 - 134 | 6.3e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 83 - 116 | 1.4e-13 | PPR repeat |
| PPR_2 | PF13041 | 87 - 136 | 5.7e-18 | PPR repeat family |
| PPR | PF01535 | 90 - 120 | 6.8e-08 | PPR repeat |
| PPR_1 | PF12854 | 118 - 150 | 5.2e-07 | PPR repeat |
| PPR_2 | PF13041 | 130 - 169 | 2.3e-08 | PPR repeat family |
| PPR_1 | PF12854 | 154 - 186 | 4.6e-08 | PPR repeat |
| PPR_2 | PF13041 | 157 - 206 | 8.1e-16 | PPR repeat family |
| PPR | PF01535 | 160 - 190 | 3.6e-07 | PPR repeat |
| PPR_3 | PF13812 | 181 - 231 | 1e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 189 - 221 | 1.1e-11 | PPR repeat |
| PPR_2 | PF13041 | 193 - 234 | 4.8e-14 | PPR repeat family |
| PPR | PF01535 | 195 - 225 | 5.6e-10 | PPR repeat |
| PPR_3 | PF13812 | 291 - 341 | 7.8e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 293 - 325 | 1.4e-11 | PPR repeat |
| PPR_2 | PF13041 | 296 - 344 | 2.1e-15 | PPR repeat family |
| PPR | PF01535 | 300 - 328 | 8.1e-09 | PPR repeat |
| PPR_2 | PF13041 | 334 - 371 | 4.9e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1008 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 263 |
| AccI | GTMKAC | 1 cut(s) | 1136 |
| AccII | CGCG | 1 cut(s) | 218 |
| AciI | CCGC | 1 cut(s) | 767 |
| AclWI | GGATC | 1 cut(s) | 1145 |
| AcsI | RAATTY | 2 cut(s) | 38, 133 |
| AcuI | CTGAAG | 1 cut(s) | 364 |
| AfaI | GTAC | 1 cut(s) | 1003 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 995 |
| AflIII | ACRYGT | 1 cut(s) | 216 |
| AhlI | ACTAGT | 2 cut(s) | 205, 1063 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1107, 1139 |
| AluBI | AGCT | 3 cut(s) | 296, 323, 760 |
| AluI | AGCT | 3 cut(s) | 296, 323, 760 |
| Alw26I | GTCTC | 3 cut(s) | 194, 666, 1037 |
| AlwI | GGATC | 1 cut(s) | 1145 |
| AoxI | GGCC | 2 cut(s) | 807, 934 |
| ApeKI | GCWGC | 3 cut(s) | 99, 102, 638 |
| ApoI | RAATTY | 2 cut(s) | 38, 133 |
| AseI | ATTAAT | 1 cut(s) | 1032 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 227, 742, 1065 |
| AsuHPI | GGTGA | 4 cut(s) | 52, 61, 358, 367 |
| AsuII | TTCGAA | 1 cut(s) | 783 |
| BauI | CACGAG | 1 cut(s) | 761 |
| BbvI | GCAGC | 3 cut(s) | 111, 114, 650 |
| BccI | CCATC | 7 cut(s) | 284, 409, 494, 547, 694, 799, 989 |
| BceAI | ACGGC | 2 cut(s) | 100, 580 |
| BciVI | GTATCC | 1 cut(s) | 716 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BcoDI | GTCTC | 3 cut(s) | 194, 666, 1037 |
| BcuI | ACTAGT | 2 cut(s) | 205, 1063 |
| BfaI | CTAG | 2 cut(s) | 206, 1064 |
| BfmI | CTRYAG | 2 cut(s) | 1095, 1137 |
| BfuI | GTATCC | 1 cut(s) | 716 |
| BglII | AGATCT | 1 cut(s) | 850 |
| BisI | GCNGC | 3 cut(s) | 100, 103, 639 |
| BlsI | GCNGC | 3 cut(s) | 101, 104, 640 |
| BmiI | GGNNCC | 1 cut(s) | 678 |
| BmsI | GCATC | 5 cut(s) | 190, 190, 385, 1090, 1112 |
| BpmI | CTGGAG | 2 cut(s) | 443, 975 |
| Bpu14I | TTCGAA | 1 cut(s) | 783 |
| BpuEI | CTTGAG | 1 cut(s) | 947 |
| Bsa29I | ATCGAT | 1 cut(s) | 630 |
| BsaI | GGTCTC | 1 cut(s) | 194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 995 |
| Bse118I | RCCGGY | 1 cut(s) | 1051 |
| Bse1I | ACTGG | 1 cut(s) | 806 |
| Bse3DI | GCAATG | 1 cut(s) | 1062 |
| BseCI | ATCGAT | 1 cut(s) | 630 |
| BseGI | GGATG | 8 cut(s) | 205, 343, 420, 505, 558, 705, 810, 903 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 995 |
| BseMI | GCAATG | 1 cut(s) | 1062 |
| BseMII | CTCAG | 1 cut(s) | 246 |
| BseNI | ACTGG | 1 cut(s) | 806 |
| BseRI | GAGGAG | 1 cut(s) | 531 |
| BseXI | GCAGC | 3 cut(s) | 111, 114, 650 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 2 cut(s) | 809, 936 |
| BshVI | ATCGAT | 1 cut(s) | 630 |
| BsiSI | CCGG | 1 cut(s) | 1052 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 995 |
| BsmAI | GTCTC | 3 cut(s) | 194, 666, 1037 |
| BsnI | GGCC | 2 cut(s) | 809, 936 |
| Bso31I | GGTCTC | 1 cut(s) | 194 |
| Bsp119I | TTCGAA | 1 cut(s) | 783 |
| Bsp143I | GATC | 5 cut(s) | 166, 547, 627, 850, 1150 |
| BspACI | CCGC | 1 cut(s) | 767 |
| BspANI | GGCC | 2 cut(s) | 809, 936 |
| BspCNI | CTCAG | 1 cut(s) | 245 |
| BspDI | ATCGAT | 1 cut(s) | 630 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspLI | GGNNCC | 1 cut(s) | 678 |
| BspMAI | CTGCAG | 1 cut(s) | 1099 |
| BspPI | GGATC | 1 cut(s) | 1145 |
| BspT104I | TTCGAA | 1 cut(s) | 783 |
| BspTNI | GGTCTC | 1 cut(s) | 194 |
| BsrDI | GCAATG | 1 cut(s) | 1062 |
| BsrFI | RCCGGY | 1 cut(s) | 1051 |
| BsrI | ACTGG | 1 cut(s) | 806 |
| BssAI | RCCGGY | 1 cut(s) | 1051 |
| BssMI | GATC | 5 cut(s) | 166, 547, 627, 850, 1150 |
| BssSI | CACGAG | 1 cut(s) | 761 |
| Bst2BI | CACGAG | 1 cut(s) | 761 |
| Bst4CI | ACNGT | 2 cut(s) | 688, 1111 |
| Bst6I | CTCTTC | 3 cut(s) | 233, 860, 969 |
| BstBI | TTCGAA | 1 cut(s) | 783 |
| BstC8I | GCNNGC | 4 cut(s) | 298, 617, 758, 1053 |
| BstDEI | CTNAG | 1 cut(s) | 232 |
| BstF5I | GGATG | 8 cut(s) | 205, 343, 420, 505, 558, 705, 810, 903 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstKTI | GATC | 5 cut(s) | 169, 550, 630, 853, 1153 |
| BstMAI | GTCTC | 3 cut(s) | 194, 666, 1037 |
| BstMBI | GATC | 5 cut(s) | 166, 547, 627, 850, 1150 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 716 |
| BstSFI | CTRYAG | 2 cut(s) | 1095, 1137 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV1I | GCAGC | 3 cut(s) | 111, 114, 650 |
| BstX2I | RGATCY | 2 cut(s) | 850, 1150 |
| BstYI | RGATCY | 2 cut(s) | 850, 1150 |
| Bsu15I | ATCGAT | 1 cut(s) | 630 |
| BsuI | GTATCC | 1 cut(s) | 716 |
| BsuRI | GGCC | 2 cut(s) | 809, 936 |
| BsuTUI | ATCGAT | 1 cut(s) | 630 |
| BtsCI | GGATG | 8 cut(s) | 205, 343, 420, 505, 558, 705, 810, 903 |
| BtsI | GCAGTG | 1 cut(s) | 1046 |
| BtsIMutI | CAGTG | 2 cut(s) | 388, 1046 |
| Cac8I | GCNNGC | 4 cut(s) | 298, 617, 758, 1053 |
| Cfr10I | RCCGGY | 1 cut(s) | 1051 |
| ClaI | ATCGAT | 1 cut(s) | 630 |
| Csp6I | GTAC | 1 cut(s) | 1002 |
| CviAII | CATG | 2 cut(s) | 571, 696 |
| CviQI | GTAC | 1 cut(s) | 1002 |
| DdeI | CTNAG | 1 cut(s) | 232 |
| DpnI | GATC | 5 cut(s) | 168, 549, 629, 852, 1152 |
| DpnII | GATC | 5 cut(s) | 166, 547, 627, 850, 1150 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 263 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 263 |
| Eam1104I | CTCTTC | 3 cut(s) | 233, 860, 969 |
| EarI | CTCTTC | 3 cut(s) | 233, 860, 969 |
| EciI | GGCGGA | 1 cut(s) | 782 |
| Eco147I | AGGCCT | 1 cut(s) | 936 |
| Eco31I | GGTCTC | 1 cut(s) | 194 |
| Eco57I | CTGAAG | 1 cut(s) | 364 |
| EcoRI | GAATTC | 1 cut(s) | 133 |
| EcoT22I | ATGCAT | 1 cut(s) | 1105 |
| FaeI | CATG | 2 cut(s) | 574, 699 |
| FatI | CATG | 2 cut(s) | 570, 695 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| FblI | GTMKAC | 1 cut(s) | 1136 |
| Fnu4HI | GCNGC | 3 cut(s) | 100, 103, 639 |
| FokI | GGATG | 8 cut(s) | 212, 350, 427, 512, 565, 712, 817, 910 |
| Fsp4HI | GCNGC | 3 cut(s) | 100, 103, 639 |
| FspBI | CTAG | 2 cut(s) | 206, 1064 |
| GluI | GCNGC | 3 cut(s) | 100, 103, 639 |
| GsuI | CTGGAG | 2 cut(s) | 443, 975 |
| HaeIII | GGCC | 2 cut(s) | 809, 936 |
| HapII | CCGG | 1 cut(s) | 1052 |
| Hin1II | CATG | 2 cut(s) | 574, 699 |
| HinfI | GANTC | 5 cut(s) | 439, 451, 643, 839, 879 |
| HpaII | CCGG | 1 cut(s) | 1052 |
| HphI | GGTGA | 4 cut(s) | 52, 61, 358, 367 |
| Hpy166II | GTNNAC | 1 cut(s) | 1137 |
| Hpy188I | TCNGA | 3 cut(s) | 235, 552, 750 |
| Hpy188III | TCNNGA | 4 cut(s) | 47, 422, 653, 992 |
| Hpy8I | GTNNAC | 1 cut(s) | 1137 |
| HpyAV | CCTTC | 3 cut(s) | 76, 388, 403 |
| HpyCH4III | ACNGT | 2 cut(s) | 688, 1111 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 716 |
| HpyF3I | CTNAG | 1 cut(s) | 232 |
| Hsp92II | CATG | 2 cut(s) | 574, 699 |
| KroI | GCCGGC | 1 cut(s) | 1051 |
| KroNI | GCCGGC | 1 cut(s) | 1053 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| Kzo9I | GATC | 5 cut(s) | 166, 547, 627, 850, 1150 |
| LmnI | GCTCC | 1 cut(s) | 293 |
| Lsp1109I | GCAGC | 3 cut(s) | 111, 114, 650 |
| LweI | GCATC | 5 cut(s) | 190, 190, 385, 1090, 1112 |
| MaeI | CTAG | 2 cut(s) | 206, 1064 |
| MaeIII | GTNAC | 5 cut(s) | 58, 149, 503, 587, 688 |
| MalI | GATC | 5 cut(s) | 168, 549, 629, 852, 1152 |
| MboI | GATC | 5 cut(s) | 166, 547, 627, 850, 1150 |
| MboII | GAAGA | 6 cut(s) | 25, 83, 86, 220, 847, 986 |
| MflI | RGATCY | 2 cut(s) | 850, 1150 |
| MluCI | AATT | 7 cut(s) | 29, 38, 106, 133, 487, 1014, 1115 |
| MluI | ACGCGT | 1 cut(s) | 216 |
| MlyI | GAGTC | 1 cut(s) | 873 |
| MmeI | TCCRAC | 3 cut(s) | 315, 907, 1105 |
| Mph1103I | ATGCAT | 1 cut(s) | 1105 |
| MroNI | GCCGGC | 1 cut(s) | 1051 |
| MroXI | GAANNNNTTC | 3 cut(s) | 227, 742, 1065 |
| MseI | TTAA | 2 cut(s) | 941, 1032 |
| MspI | CCGG | 1 cut(s) | 1052 |
| MvnI | CGCG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 716 |
| NaeI | GCCGGC | 1 cut(s) | 1053 |
| NdeII | GATC | 5 cut(s) | 166, 547, 627, 850, 1150 |
| NgoMIV | GCCGGC | 1 cut(s) | 1051 |
| NlaIII | CATG | 2 cut(s) | 574, 699 |
| NlaIV | GGNNCC | 1 cut(s) | 678 |
| NmuCI | GTSAC | 2 cut(s) | 58, 149 |
| NsiI | ATGCAT | 1 cut(s) | 1105 |
| NspV | TTCGAA | 1 cut(s) | 783 |
| PceI | AGGCCT | 1 cut(s) | 936 |
| PdiI | GCCGGC | 1 cut(s) | 1053 |
| PdmI | GAANNNNTTC | 3 cut(s) | 227, 742, 1065 |
| PfeI | GAWTC | 4 cut(s) | 439, 451, 643, 839 |
| PkrI | GCNGC | 3 cut(s) | 101, 104, 640 |
| PleI | GAGTC | 1 cut(s) | 873 |
| PpsI | GAGTC | 1 cut(s) | 873 |
| PshBI | ATTAAT | 1 cut(s) | 1032 |
| PsiI | TTATAA | 1 cut(s) | 1008 |
| PspN4I | GGNNCC | 1 cut(s) | 678 |
| PstI | CTGCAG | 1 cut(s) | 1099 |
| PsuI | RGATCY | 2 cut(s) | 850, 1150 |
| RsaI | GTAC | 1 cut(s) | 1003 |
| RsaNI | GTAC | 1 cut(s) | 1002 |
| SaqAI | TTAA | 2 cut(s) | 941, 1032 |
| SatI | GCNGC | 3 cut(s) | 100, 103, 639 |
| Sau3AI | GATC | 5 cut(s) | 166, 547, 627, 850, 1150 |
| SchI | GAGTC | 1 cut(s) | 873 |
| SfaNI | GCATC | 5 cut(s) | 190, 190, 385, 1090, 1112 |
| SfcI | CTRYAG | 2 cut(s) | 1095, 1137 |
| SfuI | TTCGAA | 1 cut(s) | 783 |
| SmlI | CTYRAG | 1 cut(s) | 962 |
| SmoI | CTYRAG | 1 cut(s) | 962 |
| SpeI | ACTAGT | 2 cut(s) | 205, 1063 |
| Sse9I | AATT | 7 cut(s) | 29, 38, 106, 133, 487, 1014, 1115 |
| SseBI | AGGCCT | 1 cut(s) | 936 |
| SsiI | CCGC | 1 cut(s) | 767 |
| SspMI | CTAG | 2 cut(s) | 206, 1064 |
| StuI | AGGCCT | 1 cut(s) | 936 |
| TaaI | ACNGT | 2 cut(s) | 688, 1111 |
| TaqI | TCGA | 3 cut(s) | 630, 783, 1021 |
| TasI | AATT | 7 cut(s) | 29, 38, 106, 133, 487, 1014, 1115 |
| TatI | WGTACW | 1 cut(s) | 1001 |
| TfiI | GAWTC | 4 cut(s) | 439, 451, 643, 839 |
| Tru1I | TTAA | 2 cut(s) | 941, 1032 |
| Tru9I | TTAA | 2 cut(s) | 941, 1032 |
| TscAI | CASTG | 2 cut(s) | 388, 1053 |
| TseFI | GTSAC | 2 cut(s) | 58, 149 |
| TseI | GCWGC | 3 cut(s) | 99, 102, 638 |
| Tsp45I | GTSAC | 2 cut(s) | 58, 149 |
| TspDTI | ATGAA | 5 cut(s) | 227, 354, 559, 684, 1170 |
| TspGWI | ACGGA | 1 cut(s) | 684 |
| TspRI | CASTG | 2 cut(s) | 388, 1053 |
| VspI | ATTAAT | 1 cut(s) | 1032 |
| XapI | RAATTY | 2 cut(s) | 38, 133 |
| XmiI | GTMKAC | 1 cut(s) | 1136 |
| XmnI | GAANNNNTTC | 3 cut(s) | 227, 742, 1065 |
| XspI | CTAG | 2 cut(s) | 206, 1064 |
| Zsp2I | ATGCAT | 1 cut(s) | 1105 |