Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 75 - 107 | 1.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 78 - 110 | 4e-06 | PPR repeat family |
| PPR_3 | PF13812 | 105 - 161 | 2.2e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 112 - 143 | 5e-09 | PPR repeat |
| PPR_2 | PF13041 | 115 - 148 | 5.6e-07 | PPR repeat family |
| PPR | PF01535 | 117 - 146 | 6.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 149 - 179 | 1.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 151 - 182 | 3.1e-06 | PPR repeat family |
| PPR_1 | PF12854 | 198 - 230 | 5.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 202 - 250 | 3.2e-12 | PPR repeat family |
| TPR_24 | PF23276 | 205 - 300 | 8.9e-07 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 233 - 266 | 8.1e-08 | PPR repeat |
| PPR_2 | PF13041 | 242 - 286 | 3.6e-12 | PPR repeat family |
| PPR | PF01535 | 243 - 269 | 2.2e-06 | PPR repeat |
| PPR_3 | PF13812 | 261 - 318 | 1.4e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 268 - 301 | 2.3e-06 | PPR repeat |
| PPR_2 | PF13041 | 273 - 321 | 9.3e-18 | PPR repeat family |
| PPR_1 | PF12854 | 304 - 332 | 1.1e-13 | PPR repeat |
| PPR_2 | PF13041 | 307 - 333 | 8.1e-08 | PPR repeat family |
| PPR | PF01535 | 310 - 332 | 2.8e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 676 |
| AciI | CCGC | 2 cut(s) | 401, 965 |
| AclWI | GGATC | 1 cut(s) | 117 |
| AcsI | RAATTY | 1 cut(s) | 885 |
| AfaI | GTAC | 1 cut(s) | 612 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 676 |
| AflIII | ACRYGT | 1 cut(s) | 778 |
| AgsI | TTSAA | 9 cut(s) | 97, 175, 217, 230, 358, 493, 572, 622, 695 |
| AluBI | AGCT | 4 cut(s) | 192, 445, 558, 991 |
| AluI | AGCT | 4 cut(s) | 192, 445, 558, 991 |
| Alw26I | GTCTC | 1 cut(s) | 769 |
| AlwI | GGATC | 1 cut(s) | 117 |
| AoxI | GGCC | 1 cut(s) | 876 |
| ApoI | RAATTY | 1 cut(s) | 885 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 524, 915 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 301 |
| BanII | GRGCYC | 1 cut(s) | 809 |
| BbsI | GAAGAC | 1 cut(s) | 218 |
| BccI | CCATC | 4 cut(s) | 100, 418, 482, 649 |
| BceAI | ACGGC | 1 cut(s) | 280 |
| BcoDI | GTCTC | 1 cut(s) | 769 |
| BisI | GCNGC | 1 cut(s) | 402 |
| BlsI | GCNGC | 1 cut(s) | 403 |
| BmsI | GCATC | 5 cut(s) | 22, 390, 487, 502, 625 |
| BpiI | GAAGAC | 1 cut(s) | 218 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 980 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 2 cut(s) | 296, 467 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 676 |
| Bse3DI | GCAATG | 1 cut(s) | 522 |
| BseGI | GGATG | 3 cut(s) | 13, 502, 660 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 676 |
| BseMI | GCAATG | 1 cut(s) | 522 |
| BseMII | CTCAG | 2 cut(s) | 56, 543 |
| BseRI | GAGGAG | 1 cut(s) | 771 |
| BsgI | GTGCAG | 1 cut(s) | 285 |
| BshFI | GGCC | 1 cut(s) | 878 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 676 |
| BsmAI | GTCTC | 1 cut(s) | 769 |
| BsnI | GGCC | 1 cut(s) | 878 |
| Bsp1286I | GDGCHC | 1 cut(s) | 809 |
| Bsp143I | GATC | 3 cut(s) | 109, 114, 787 |
| BspACI | CCGC | 2 cut(s) | 401, 965 |
| BspANI | GGCC | 1 cut(s) | 878 |
| BspCNI | CTCAG | 2 cut(s) | 55, 542 |
| BspPI | GGATC | 1 cut(s) | 117 |
| BsrDI | GCAATG | 1 cut(s) | 522 |
| BssMI | GATC | 3 cut(s) | 109, 114, 787 |
| Bst4CI | ACNGT | 6 cut(s) | 364, 398, 743, 749, 928, 953 |
| Bst6I | CTCTTC | 1 cut(s) | 530 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 19 |
| BstDEI | CTNAG | 5 cut(s) | 42, 291, 416, 529, 999 |
| BstF5I | GGATG | 3 cut(s) | 13, 502, 660 |
| BstKTI | GATC | 3 cut(s) | 112, 117, 790 |
| BstMAI | GTCTC | 1 cut(s) | 769 |
| BstMBI | GATC | 3 cut(s) | 109, 114, 787 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 19 |
| BstNSI | RCATGY | 1 cut(s) | 782 |
| BstV2I | GAAGAC | 1 cut(s) | 218 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 319 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| BsuRI | GGCC | 1 cut(s) | 878 |
| BtgZI | GCGATG | 1 cut(s) | 547 |
| BtsCI | GGATG | 3 cut(s) | 13, 502, 660 |
| BtsIMutI | CAGTG | 1 cut(s) | 403 |
| Csp6I | GTAC | 1 cut(s) | 611 |
| CviAII | CATG | 3 cut(s) | 341, 385, 779 |
| CviQI | GTAC | 1 cut(s) | 611 |
| DdeI | CTNAG | 5 cut(s) | 42, 291, 416, 529, 999 |
| DpnI | GATC | 3 cut(s) | 111, 116, 789 |
| DpnII | GATC | 3 cut(s) | 109, 114, 787 |
| Eam1104I | CTCTTC | 1 cut(s) | 530 |
| EarI | CTCTTC | 1 cut(s) | 530 |
| Eco24I | GRGCYC | 1 cut(s) | 809 |
| EcoT38I | GRGCYC | 1 cut(s) | 809 |
| FaeI | CATG | 3 cut(s) | 344, 388, 782 |
| FatI | CATG | 3 cut(s) | 340, 384, 778 |
| FauI | CCCGC | 1 cut(s) | 958 |
| Fnu4HI | GCNGC | 1 cut(s) | 402 |
| FokI | GGATG | 2 cut(s) | 509, 667 |
| FriOI | GRGCYC | 1 cut(s) | 809 |
| Fsp4HI | GCNGC | 1 cut(s) | 402 |
| GluI | GCNGC | 1 cut(s) | 402 |
| HaeIII | GGCC | 1 cut(s) | 878 |
| Hin1II | CATG | 3 cut(s) | 344, 388, 782 |
| HincII | GTYRAC | 1 cut(s) | 56 |
| HindII | GTYRAC | 1 cut(s) | 56 |
| HinfI | GANTC | 4 cut(s) | 175, 280, 484, 691 |
| HphI | GGTGA | 2 cut(s) | 235, 301 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 351 |
| Hpy188I | TCNGA | 4 cut(s) | 45, 114, 483, 532 |
| Hpy188III | TCNNGA | 2 cut(s) | 118, 275 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 351 |
| HpyAV | CCTTC | 4 cut(s) | 33, 487, 628, 796 |
| HpyCH4III | ACNGT | 6 cut(s) | 364, 398, 743, 749, 928, 953 |
| HpyCH4IV | ACGT | 1 cut(s) | 456 |
| HpyCH4V | TGCA | 8 cut(s) | 83, 302, 381, 409, 500, 515, 638, 855 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 19 |
| HpyF3I | CTNAG | 5 cut(s) | 42, 291, 416, 529, 999 |
| HpySE526I | ACGT | 1 cut(s) | 456 |
| Hsp92II | CATG | 3 cut(s) | 344, 388, 782 |
| Kzo9I | GATC | 3 cut(s) | 109, 114, 787 |
| LpnPI | CCDG | 3 cut(s) | 207, 246, 465 |
| LweI | GCATC | 5 cut(s) | 22, 390, 487, 502, 625 |
| MaeII | ACGT | 1 cut(s) | 456 |
| MaeIII | GTNAC | 4 cut(s) | 460, 743, 830, 928 |
| MalI | GATC | 3 cut(s) | 111, 116, 789 |
| MboI | GATC | 3 cut(s) | 109, 114, 787 |
| MboII | GAAGA | 8 cut(s) | 205, 218, 232, 433, 440, 517, 592, 871 |
| MfeI | CAATTG | 1 cut(s) | 157 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MhlI | GDGCHC | 1 cut(s) | 809 |
| MluCI | AATT | 6 cut(s) | 157, 209, 410, 712, 727, 885 |
| MlyI | GAGTC | 1 cut(s) | 493 |
| MnlI | CCTC | 9 cut(s) | 27, 316, 320, 428, 533, 692, 749, 763, 868 |
| MroXI | GAANNNNTTC | 2 cut(s) | 524, 915 |
| MseI | TTAA | 4 cut(s) | 249, 816, 891, 936 |
| MslI | CAYNNNNRTG | 1 cut(s) | 314 |
| MunI | CAATTG | 1 cut(s) | 157 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 19 |
| NdeII | GATC | 3 cut(s) | 109, 114, 787 |
| NlaIII | CATG | 3 cut(s) | 344, 388, 782 |
| NmuCI | GTSAC | 1 cut(s) | 460 |
| NspI | RCATGY | 1 cut(s) | 782 |
| PciI | ACATGT | 1 cut(s) | 778 |
| PdmI | GAANNNNTTC | 2 cut(s) | 524, 915 |
| PfeI | GAWTC | 3 cut(s) | 175, 280, 691 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 676 |
| PkrI | GCNGC | 1 cut(s) | 403 |
| PleI | GAGTC | 1 cut(s) | 492 |
| PpsI | GAGTC | 1 cut(s) | 492 |
| PscI | ACATGT | 1 cut(s) | 778 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 1 cut(s) | 612 |
| RsaNI | GTAC | 1 cut(s) | 611 |
| RseI | CAYNNNNRTG | 1 cut(s) | 314 |
| SaqAI | TTAA | 4 cut(s) | 249, 816, 891, 936 |
| SatI | GCNGC | 1 cut(s) | 402 |
| Sau3AI | GATC | 3 cut(s) | 109, 114, 787 |
| SchI | GAGTC | 1 cut(s) | 493 |
| SduI | GDGCHC | 1 cut(s) | 809 |
| SfaNI | GCATC | 5 cut(s) | 22, 390, 487, 502, 625 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 314 |
| SmlI | CTYRAG | 2 cut(s) | 275, 446 |
| SmoI | CTYRAG | 2 cut(s) | 275, 446 |
| Sse9I | AATT | 6 cut(s) | 157, 209, 410, 712, 727, 885 |
| SsiI | CCGC | 2 cut(s) | 401, 965 |
| SspI | AATATT | 1 cut(s) | 77 |
| TaaI | ACNGT | 6 cut(s) | 364, 398, 743, 749, 928, 953 |
| TaiI | ACGT | 1 cut(s) | 459 |
| TaqI | TCGA | 1 cut(s) | 716 |
| TasI | AATT | 6 cut(s) | 157, 209, 410, 712, 727, 885 |
| TauI | GCSGC | 1 cut(s) | 404 |
| TfiI | GAWTC | 3 cut(s) | 175, 280, 691 |
| Tru1I | TTAA | 4 cut(s) | 249, 816, 891, 936 |
| Tru9I | TTAA | 4 cut(s) | 249, 816, 891, 936 |
| TscAI | CASTG | 1 cut(s) | 403 |
| TseFI | GTSAC | 1 cut(s) | 460 |
| Tsp45I | GTSAC | 1 cut(s) | 460 |
| TspDTI | ATGAA | 1 cut(s) | 533 |
| TspGWI | ACGGA | 1 cut(s) | 861 |
| TspRI | CASTG | 1 cut(s) | 403 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 676 |
| XapI | RAATTY | 1 cut(s) | 885 |
| XceI | RCATGY | 1 cut(s) | 782 |
| XmnI | GAANNNNTTC | 2 cut(s) | 524, 915 |