Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 37 | 1.1e-15 | PPR repeat |
| PPR_3 | PF13812 | 6 - 53 | 5.6e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 8 - 57 | 3.6e-19 | PPR repeat family |
| TPR_24 | PF23276 | 10 - 103 | 3.3e-08 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 11 - 40 | 4.4e-10 | PPR repeat |
| PPR_1 | PF12854 | 40 - 72 | 3.4e-07 | PPR repeat |
| PPR_2 | PF13041 | 51 - 92 | 4.2e-10 | PPR repeat family |
| PPR_3 | PF13812 | 67 - 122 | 1.1e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 76 - 103 | 1.4e-07 | PPR repeat |
| PPR_2 | PF13041 | 79 - 125 | 5.6e-16 | PPR repeat family |
| PPR_1 | PF12854 | 110 - 141 | 8.1e-08 | PPR repeat |
| PPR_2 | PF13041 | 117 - 161 | 3.5e-12 | PPR repeat family |
| PPR | PF01535 | 117 - 146 | 7.4e-07 | PPR repeat |
| PPR_1 | PF12854 | 144 - 176 | 9.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 152 - 195 | 6.8e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 68 |
| AclWI | GGATC | 1 cut(s) | 596 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AcsI | RAATTY | 1 cut(s) | 75 |
| AgsI | TTSAA | 7 cut(s) | 80, 137, 263, 290, 398, 484, 521 |
| AhlI | ACTAGT | 1 cut(s) | 514 |
| AjnI | CCWGG | 1 cut(s) | 604 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 421, 453 |
| AluBI | AGCT | 2 cut(s) | 94, 278 |
| AluI | AGCT | 2 cut(s) | 94, 278 |
| Alw26I | GTCTC | 2 cut(s) | 488, 505 |
| AlwI | GGATC | 1 cut(s) | 596 |
| AoxI | GGCC | 4 cut(s) | 118, 160, 385, 504 |
| ApoI | RAATTY | 1 cut(s) | 75 |
| AseI | ATTAAT | 1 cut(s) | 392 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 18 |
| AspS9I | GGNCC | 3 cut(s) | 385, 453, 504 |
| AvaII | GGWCC | 1 cut(s) | 453 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| BauI | CACGAG | 1 cut(s) | 508 |
| BccI | CCATC | 3 cut(s) | 47, 152, 440 |
| BceAI | ACGGC | 1 cut(s) | 204 |
| BciT130I | CCWGG | 1 cut(s) | 606 |
| BcoDI | GTCTC | 2 cut(s) | 488, 505 |
| BcuI | ACTAGT | 1 cut(s) | 514 |
| BfaI | CTAG | 2 cut(s) | 297, 515 |
| BfmI | CTRYAG | 2 cut(s) | 310, 546 |
| BglII | AGATCT | 1 cut(s) | 301 |
| Bme1390I | CCNGG | 1 cut(s) | 606 |
| Bme18I | GGWCC | 1 cut(s) | 453 |
| BmgT120I | GGNCC | 3 cut(s) | 385, 453, 504 |
| BmrFI | CCNGG | 1 cut(s) | 606 |
| BmsI | GCATC | 4 cut(s) | 96, 388, 541, 563 |
| BpmI | CTGGAG | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 1 cut(s) | 472 |
| BseBI | CCWGG | 1 cut(s) | 606 |
| BseDI | CCNNGG | 1 cut(s) | 472 |
| BseGI | GGATG | 1 cut(s) | 124 |
| BseMII | CTCAG | 2 cut(s) | 116, 404 |
| BshFI | GGCC | 4 cut(s) | 120, 162, 387, 506 |
| BsmAI | GTCTC | 2 cut(s) | 488, 505 |
| BsnI | GGCC | 4 cut(s) | 120, 162, 387, 506 |
| Bsp143I | GATC | 2 cut(s) | 301, 601 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BspANI | GGCC | 4 cut(s) | 120, 162, 387, 506 |
| BspCNI | CTCAG | 2 cut(s) | 115, 405 |
| BspMAI | CTGCAG | 1 cut(s) | 550 |
| BspPI | GGATC | 1 cut(s) | 596 |
| BssECI | CCNNGG | 1 cut(s) | 472 |
| BssMI | GATC | 2 cut(s) | 301, 601 |
| BssSI | CACGAG | 1 cut(s) | 508 |
| Bst2BI | CACGAG | 1 cut(s) | 508 |
| Bst2UI | CCWGG | 1 cut(s) | 606 |
| Bst6I | CTCTTC | 1 cut(s) | 311 |
| BstDEI | CTNAG | 2 cut(s) | 102, 413 |
| BstF5I | GGATG | 1 cut(s) | 124 |
| BstKTI | GATC | 2 cut(s) | 304, 604 |
| BstMAI | GTCTC | 2 cut(s) | 488, 505 |
| BstMBI | GATC | 2 cut(s) | 301, 601 |
| BstNI | CCWGG | 1 cut(s) | 606 |
| BstSCI | CCNGG | 1 cut(s) | 604 |
| BstSFI | CTRYAG | 2 cut(s) | 310, 546 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 450 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| BsuRI | GGCC | 4 cut(s) | 120, 162, 387, 506 |
| BtsCI | GGATG | 1 cut(s) | 124 |
| Cfr13I | GGNCC | 3 cut(s) | 385, 453, 504 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 31, 66 |
| CviAII | CATG | 2 cut(s) | 368, 501 |
| CviJI | RGCY | 9 cut(s) | 94, 120, 162, 218, 278, 337, 387, 435, 506 |
| CviKI_1 | RGCY | 9 cut(s) | 94, 120, 162, 218, 278, 337, 387, 435, 506 |
| DdeI | CTNAG | 2 cut(s) | 102, 413 |
| DpnI | GATC | 2 cut(s) | 303, 603 |
| DpnII | GATC | 2 cut(s) | 301, 601 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 1 cut(s) | 311 |
| EarI | CTCTTC | 1 cut(s) | 311 |
| Eco47I | GGWCC | 1 cut(s) | 453 |
| EcoO109I | RGGNCCY | 1 cut(s) | 385 |
| EcoRI | GAATTC | 1 cut(s) | 75 |
| EcoRII | CCWGG | 1 cut(s) | 604 |
| EcoT22I | ATGCAT | 1 cut(s) | 556 |
| FaeI | CATG | 2 cut(s) | 371, 504 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 216, 248, 513, 545 |
| FatI | CATG | 2 cut(s) | 367, 500 |
| FauI | CCCGC | 1 cut(s) | 61 |
| FokI | GGATG | 1 cut(s) | 111 |
| FspBI | CTAG | 2 cut(s) | 297, 515 |
| GsuI | CTGGAG | 1 cut(s) | 426 |
| HaeIII | GGCC | 4 cut(s) | 120, 162, 387, 506 |
| Hin1II | CATG | 2 cut(s) | 371, 504 |
| HinfI | GANTC | 4 cut(s) | 290, 364, 593, 629 |
| Hpy166II | GTNNAC | 1 cut(s) | 247 |
| Hpy188I | TCNGA | 3 cut(s) | 105, 473, 638 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 80, 443, 521 |
| Hpy8I | GTNNAC | 1 cut(s) | 247 |
| HpyAV | CCTTC | 2 cut(s) | 257, 583 |
| HpyCH4V | TGCA | 5 cut(s) | 63, 109, 273, 548, 554 |
| HpyF3I | CTNAG | 2 cut(s) | 102, 413 |
| Hsp92II | CATG | 2 cut(s) | 371, 504 |
| Kzo9I | GATC | 2 cut(s) | 301, 601 |
| LpnPI | CCDG | 8 cut(s) | 36, 176, 188, 264, 368, 456, 591, 618 |
| LweI | GCATC | 4 cut(s) | 96, 388, 541, 563 |
| MaeI | CTAG | 2 cut(s) | 297, 515 |
| MaeIII | GTNAC | 1 cut(s) | 167 |
| MalI | GATC | 2 cut(s) | 303, 603 |
| MboI | GATC | 2 cut(s) | 301, 601 |
| MboII | GAAGA | 1 cut(s) | 298 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluCI | AATT | 5 cut(s) | 75, 197, 285, 393, 566 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MmeI | TCCRAC | 1 cut(s) | 431 |
| MnlI | CCTC | 2 cut(s) | 467, 528 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| Mph1103I | ATGCAT | 1 cut(s) | 556 |
| MroXI | GAANNNNTTC | 1 cut(s) | 18 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 4 cut(s) | 204, 234, 392, 624 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| MspR9I | CCNGG | 1 cut(s) | 606 |
| MvaI | CCWGG | 1 cut(s) | 606 |
| NdeII | GATC | 2 cut(s) | 301, 601 |
| NlaIII | CATG | 2 cut(s) | 371, 504 |
| NsiI | ATGCAT | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 18 |
| PfeI | GAWTC | 4 cut(s) | 290, 364, 593, 629 |
| PshBI | ATTAAT | 1 cut(s) | 392 |
| Psp6I | CCWGG | 1 cut(s) | 604 |
| PspGI | CCWGG | 1 cut(s) | 604 |
| PspPI | GGNCC | 3 cut(s) | 385, 453, 504 |
| PstI | CTGCAG | 1 cut(s) | 550 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| SaqAI | TTAA | 4 cut(s) | 204, 234, 392, 624 |
| Sau3AI | GATC | 2 cut(s) | 301, 601 |
| Sau96I | GGNCC | 3 cut(s) | 385, 453, 504 |
| ScrFI | CCNGG | 1 cut(s) | 606 |
| SetI | ASST | 5 cut(s) | 96, 115, 268, 280, 458 |
| SfaNI | GCATC | 4 cut(s) | 96, 388, 541, 563 |
| SfcI | CTRYAG | 2 cut(s) | 310, 546 |
| SinI | GGWCC | 1 cut(s) | 453 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| SmlI | CTYRAG | 1 cut(s) | 530 |
| SmoI | CTYRAG | 1 cut(s) | 530 |
| SpeI | ACTAGT | 1 cut(s) | 514 |
| Sse9I | AATT | 5 cut(s) | 75, 197, 285, 393, 566 |
| SsiI | CCGC | 1 cut(s) | 68 |
| SspI | AATATT | 1 cut(s) | 238 |
| SspMI | CTAG | 2 cut(s) | 297, 515 |
| StyD4I | CCNGG | 1 cut(s) | 604 |
| TaqI | TCGA | 1 cut(s) | 587 |
| TasI | AATT | 5 cut(s) | 75, 197, 285, 393, 566 |
| TfiI | GAWTC | 4 cut(s) | 290, 364, 593, 629 |
| Tru1I | TTAA | 4 cut(s) | 204, 234, 392, 624 |
| Tru9I | TTAA | 4 cut(s) | 204, 234, 392, 624 |
| TspDTI | ATGAA | 1 cut(s) | 356 |
| VpaK11BI | GGWCC | 1 cut(s) | 453 |
| VspI | ATTAAT | 1 cut(s) | 392 |
| XapI | RAATTY | 1 cut(s) | 75 |
| XmnI | GAANNNNTTC | 1 cut(s) | 18 |
| XspI | CTAG | 2 cut(s) | 297, 515 |
| Zsp2I | ATGCAT | 1 cut(s) | 556 |