Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 8 - 57 | 2e-06 | PPR repeat family |
| PPR_2 | PF13041 | 47 - 90 | 3.1e-08 | PPR repeat family |
| PPR_3 | PF13812 | 70 - 125 | 4.8e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 75 - 107 | 2e-08 | PPR repeat |
| PPR_2 | PF13041 | 78 - 127 | 5.6e-14 | PPR repeat family |
| PPR_3 | PF13812 | 106 - 160 | 7.1e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 112 - 143 | 5.9e-12 | PPR repeat |
| PPR_2 | PF13041 | 114 - 160 | 5e-13 | PPR repeat family |
| PPR | PF01535 | 117 - 146 | 1.2e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 108 |
| AatII | GACGTC | 1 cut(s) | 240 |
| AccII | CGCG | 1 cut(s) | 13 |
| AciI | CCGC | 1 cut(s) | 402 |
| AcyI | GRCGYC | 1 cut(s) | 237 |
| AgsI | TTSAA | 7 cut(s) | 70, 97, 175, 217, 230, 250, 358 |
| AluBI | AGCT | 1 cut(s) | 192 |
| AluI | AGCT | 1 cut(s) | 192 |
| Ama87I | CYCGRG | 1 cut(s) | 275 |
| AsuHPI | GGTGA | 1 cut(s) | 301 |
| AvaI | CYCGRG | 1 cut(s) | 275 |
| BbsI | GAAGAC | 2 cut(s) | 218, 232 |
| BccI | CCATC | 4 cut(s) | 100, 379, 418, 482 |
| BceAI | ACGGC | 1 cut(s) | 280 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BisI | GCNGC | 1 cut(s) | 402 |
| BlsI | GCNGC | 1 cut(s) | 403 |
| BmeT110I | CYCGRG | 1 cut(s) | 275 |
| BpiI | GAAGAC | 2 cut(s) | 218, 232 |
| Bpu10I | CCTNAGC | 2 cut(s) | 291, 447 |
| BsaHI | GRCGYC | 1 cut(s) | 237 |
| BseGI | GGATG | 1 cut(s) | 349 |
| BseMII | CTCAG | 2 cut(s) | 56, 438 |
| BsgI | GTGCAG | 1 cut(s) | 285 |
| Bsh1236I | CGCG | 1 cut(s) | 13 |
| BsiHKCI | CYCGRG | 1 cut(s) | 275 |
| BsiSI | CCGG | 1 cut(s) | 341 |
| BsoBI | CYCGRG | 1 cut(s) | 275 |
| Bsp143I | GATC | 1 cut(s) | 114 |
| BspACI | CCGC | 1 cut(s) | 402 |
| BspCNI | CTCAG | 2 cut(s) | 55, 439 |
| BspFNI | CGCG | 1 cut(s) | 13 |
| BspMAI | CTGCAG | 1 cut(s) | 85 |
| BssMI | GATC | 1 cut(s) | 114 |
| BssNI | GRCGYC | 1 cut(s) | 237 |
| Bst4CI | ACNGT | 2 cut(s) | 364, 398 |
| BstACI | GRCGYC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 4 cut(s) | 42, 291, 416, 447 |
| BstF5I | GGATG | 1 cut(s) | 349 |
| BstFNI | CGCG | 1 cut(s) | 13 |
| BstKTI | GATC | 1 cut(s) | 117 |
| BstMBI | GATC | 1 cut(s) | 114 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 19 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstUI | CGCG | 1 cut(s) | 13 |
| BstV2I | GAAGAC | 2 cut(s) | 218, 232 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 319 |
| BtsCI | GGATG | 1 cut(s) | 349 |
| BtsIMutI | CAGTG | 1 cut(s) | 403 |
| CseI | GACGC | 1 cut(s) | 2 |
| CviAII | CATG | 1 cut(s) | 382 |
| CviJI | RGCY | 7 cut(s) | 192, 267, 290, 340, 375, 445, 451 |
| CviKI_1 | RGCY | 7 cut(s) | 192, 267, 290, 340, 375, 445, 451 |
| DdeI | CTNAG | 4 cut(s) | 42, 291, 416, 447 |
| DpnI | GATC | 1 cut(s) | 116 |
| DpnII | GATC | 1 cut(s) | 114 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 108 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 108 |
| Eco88I | CYCGRG | 1 cut(s) | 275 |
| FaeI | CATG | 1 cut(s) | 385 |
| FaiI | YATR | 4 cut(s) | 138, 383, 407, 441 |
| FatI | CATG | 1 cut(s) | 381 |
| Fnu4HI | GCNGC | 1 cut(s) | 402 |
| FokI | GGATG | 1 cut(s) | 356 |
| Fsp4HI | GCNGC | 1 cut(s) | 402 |
| GluI | GCNGC | 1 cut(s) | 402 |
| HapII | CCGG | 1 cut(s) | 341 |
| HgaI | GACGC | 1 cut(s) | 2 |
| Hin1I | GRCGYC | 1 cut(s) | 237 |
| Hin1II | CATG | 1 cut(s) | 385 |
| HincII | GTYRAC | 1 cut(s) | 56 |
| HindII | GTYRAC | 1 cut(s) | 56 |
| HinfI | GANTC | 2 cut(s) | 175, 280 |
| HpaII | CCGG | 1 cut(s) | 341 |
| HphI | GGTGA | 1 cut(s) | 301 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 351 |
| Hpy188I | TCNGA | 4 cut(s) | 45, 114, 119, 129 |
| Hpy188III | TCNNGA | 2 cut(s) | 275, 277 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 351 |
| HpyAV | CCTTC | 1 cut(s) | 33 |
| HpyCH4III | ACNGT | 2 cut(s) | 364, 398 |
| HpyCH4IV | ACGT | 2 cut(s) | 237, 456 |
| HpyCH4V | TGCA | 4 cut(s) | 83, 302, 381, 409 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 19 |
| HpyF3I | CTNAG | 4 cut(s) | 42, 291, 416, 447 |
| HpySE526I | ACGT | 2 cut(s) | 237, 456 |
| Hsp92I | GRCGYC | 1 cut(s) | 237 |
| Hsp92II | CATG | 1 cut(s) | 385 |
| Kzo9I | GATC | 1 cut(s) | 114 |
| LpnPI | CCDG | 4 cut(s) | 246, 354, 459, 465 |
| MaeII | ACGT | 2 cut(s) | 237, 456 |
| MaeIII | GTNAC | 2 cut(s) | 411, 460 |
| MalI | GATC | 1 cut(s) | 116 |
| MboI | GATC | 1 cut(s) | 114 |
| MboII | GAAGA | 5 cut(s) | 205, 218, 232, 433, 440 |
| MfeI | CAATTG | 1 cut(s) | 157 |
| MluCI | AATT | 4 cut(s) | 65, 120, 157, 209 |
| MnlI | CCTC | 4 cut(s) | 27, 316, 320, 428 |
| MslI | CAYNNNNRTG | 1 cut(s) | 314 |
| MspI | CCGG | 1 cut(s) | 341 |
| MunI | CAATTG | 1 cut(s) | 157 |
| MvnI | CGCG | 1 cut(s) | 13 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 19 |
| NdeII | GATC | 1 cut(s) | 114 |
| NlaIII | CATG | 1 cut(s) | 385 |
| NmuCI | GTSAC | 1 cut(s) | 460 |
| PaeR7I | CTCGAG | 1 cut(s) | 275 |
| PfeI | GAWTC | 2 cut(s) | 175, 280 |
| PkrI | GCNGC | 1 cut(s) | 403 |
| PstI | CTGCAG | 1 cut(s) | 85 |
| RseI | CAYNNNNRTG | 1 cut(s) | 314 |
| SatI | GCNGC | 1 cut(s) | 402 |
| Sau3AI | GATC | 1 cut(s) | 114 |
| SetI | ASST | 5 cut(s) | 194, 240, 331, 459, 467 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| Sfr274I | CTCGAG | 1 cut(s) | 275 |
| SlaI | CTCGAG | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 314 |
| SmlI | CTYRAG | 1 cut(s) | 275 |
| SmoI | CTYRAG | 1 cut(s) | 275 |
| Sse9I | AATT | 4 cut(s) | 65, 120, 157, 209 |
| SsiI | CCGC | 1 cut(s) | 402 |
| SspI | AATATT | 1 cut(s) | 77 |
| TaaI | ACNGT | 2 cut(s) | 364, 398 |
| TaiI | ACGT | 2 cut(s) | 240, 459 |
| TaqI | TCGA | 1 cut(s) | 276 |
| TasI | AATT | 4 cut(s) | 65, 120, 157, 209 |
| TauI | GCSGC | 1 cut(s) | 404 |
| TfiI | GAWTC | 2 cut(s) | 175, 280 |
| TscAI | CASTG | 1 cut(s) | 403 |
| TseFI | GTSAC | 1 cut(s) | 460 |
| Tsp45I | GTSAC | 1 cut(s) | 460 |
| TspRI | CASTG | 1 cut(s) | 403 |
| XhoI | CTCGAG | 1 cut(s) | 275 |
| ZraI | GACGTC | 1 cut(s) | 238 |