Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 2 - 35 | 2.8e-08 | PPR repeat family |
| PPR_long | PF17177 | 5 - 156 | 1.5e-12 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 17 - 49 | 2.8e-13 | PPR repeat |
| PPR_2 | PF13041 | 21 - 70 | 2.5e-18 | PPR repeat family |
| PPR | PF01535 | 24 - 54 | 2.9e-06 | PPR repeat |
| PPR_3 | PF13812 | 45 - 104 | 4.3e-13 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 52 - 84 | 2.2e-12 | PPR repeat |
| PPR_2 | PF13041 | 56 - 105 | 1.9e-17 | PPR repeat family |
| PPR | PF01535 | 59 - 89 | 7.4e-09 | PPR repeat |
| MRP-S27 | PF10037 | 60 - 131 | 1.9e-06 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 87 - 119 | 3.7e-08 | PPR repeat |
| PPR_2 | PF13041 | 95 - 139 | 1.4e-12 | PPR repeat family |
| PPR_1 | PF12854 | 123 - 155 | 1.6e-11 | PPR repeat |
| PPR_2 | PF13041 | 126 - 175 | 1.4e-15 | PPR repeat family |
| PPR | PF01535 | 129 - 158 | 1.8e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 271 |
| AciI | CCGC | 1 cut(s) | 17 |
| AclWI | GGATC | 1 cut(s) | 282 |
| AfaI | GTAC | 1 cut(s) | 499 |
| AgsI | TTSAA | 5 cut(s) | 130, 197, 289, 362, 374 |
| AhlI | ACTAGT | 1 cut(s) | 112 |
| AjnI | CCWGG | 1 cut(s) | 294 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 434, 466 |
| AluBI | AGCT | 1 cut(s) | 230 |
| AluI | AGCT | 1 cut(s) | 230 |
| AlwI | GGATC | 1 cut(s) | 282 |
| Aor13HI | TCCGGA | 1 cut(s) | 271 |
| AoxI | GGCC | 1 cut(s) | 438 |
| ApeKI | GCWGC | 1 cut(s) | 238 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 134 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 99, 132 |
| BbsI | GAAGAC | 1 cut(s) | 442 |
| BbvI | GCAGC | 1 cut(s) | 225 |
| BccI | CCATC | 3 cut(s) | 34, 316, 454 |
| BciT130I | CCWGG | 1 cut(s) | 296 |
| BciVI | GTATCC | 1 cut(s) | 100 |
| BclI | TGATCA | 1 cut(s) | 118 |
| BcuI | ACTAGT | 1 cut(s) | 112 |
| BfaI | CTAG | 3 cut(s) | 113, 212, 422 |
| BfuI | GTATCC | 1 cut(s) | 100 |
| BisI | GCNGC | 2 cut(s) | 18, 239 |
| BlsI | GCNGC | 2 cut(s) | 19, 240 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| BmiI | GGNNCC | 1 cut(s) | 475 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmsI | GCATC | 1 cut(s) | 44 |
| BpiI | GAAGAC | 1 cut(s) | 442 |
| BpmI | CTGGAG | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 1 cut(s) | 477 |
| BsaWI | WCCGGW | 1 cut(s) | 271 |
| BseAI | TCCGGA | 1 cut(s) | 271 |
| BseBI | CCWGG | 1 cut(s) | 296 |
| BseDI | CCNNGG | 1 cut(s) | 477 |
| BseGI | GGATG | 3 cut(s) | 59, 250, 327 |
| BseXI | GCAGC | 1 cut(s) | 225 |
| BshFI | GGCC | 1 cut(s) | 440 |
| BsiSI | CCGG | 1 cut(s) | 272 |
| BsnI | GGCC | 1 cut(s) | 440 |
| Bsp13I | TCCGGA | 1 cut(s) | 271 |
| Bsp143I | GATC | 3 cut(s) | 118, 274, 454 |
| Bsp19I | CCATGG | 1 cut(s) | 477 |
| BspACI | CCGC | 1 cut(s) | 17 |
| BspANI | GGCC | 1 cut(s) | 440 |
| BspEI | TCCGGA | 1 cut(s) | 271 |
| BspLI | GGNNCC | 1 cut(s) | 475 |
| BspPI | GGATC | 1 cut(s) | 282 |
| BssECI | CCNNGG | 1 cut(s) | 477 |
| BssMI | GATC | 3 cut(s) | 118, 274, 454 |
| BssT1I | CCWWGG | 1 cut(s) | 477 |
| Bst2UI | CCWGG | 1 cut(s) | 296 |
| Bst4CI | ACNGT | 3 cut(s) | 95, 410, 416 |
| Bst6I | CTCTTC | 2 cut(s) | 39, 140 |
| BstC8I | GCNNGC | 1 cut(s) | 59 |
| BstDSI | CCRYGG | 1 cut(s) | 477 |
| BstF5I | GGATG | 3 cut(s) | 59, 250, 327 |
| BstKTI | GATC | 3 cut(s) | 121, 277, 457 |
| BstMBI | GATC | 3 cut(s) | 118, 274, 454 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 213 |
| BstNI | CCWGG | 1 cut(s) | 296 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstV1I | GCAGC | 1 cut(s) | 225 |
| BstV2I | GAAGAC | 1 cut(s) | 442 |
| BstX2I | RGATCY | 1 cut(s) | 274 |
| BstYI | RGATCY | 1 cut(s) | 274 |
| BsuI | GTATCC | 1 cut(s) | 100 |
| BsuRI | GGCC | 1 cut(s) | 440 |
| BtgI | CCRYGG | 1 cut(s) | 477 |
| BtsCI | GGATG | 3 cut(s) | 59, 250, 327 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 2 cut(s) | 12, 412 |
| Cac8I | GCNNGC | 1 cut(s) | 59 |
| Csp6I | GTAC | 1 cut(s) | 498 |
| CviAII | CATG | 1 cut(s) | 478 |
| CviJI | RGCY | 7 cut(s) | 20, 61, 230, 238, 335, 440, 474 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 61, 230, 238, 335, 440, 474 |
| CviQI | GTAC | 1 cut(s) | 498 |
| DpnI | GATC | 3 cut(s) | 120, 276, 456 |
| DpnII | GATC | 3 cut(s) | 118, 274, 454 |
| Eam1104I | CTCTTC | 2 cut(s) | 39, 140 |
| EarI | CTCTTC | 2 cut(s) | 39, 140 |
| Eco130I | CCWWGG | 1 cut(s) | 477 |
| EcoRII | CCWGG | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 1 cut(s) | 477 |
| ErhI | CCWWGG | 1 cut(s) | 477 |
| FaeI | CATG | 1 cut(s) | 481 |
| FaiI | YATR | 6 cut(s) | 68, 266, 391, 404, 479, 503 |
| FatI | CATG | 1 cut(s) | 477 |
| FbaI | TGATCA | 1 cut(s) | 118 |
| Fnu4HI | GCNGC | 2 cut(s) | 18, 239 |
| FokI | GGATG | 3 cut(s) | 66, 257, 334 |
| Fsp4HI | GCNGC | 2 cut(s) | 18, 239 |
| FspBI | CTAG | 3 cut(s) | 113, 212, 422 |
| GluI | GCNGC | 2 cut(s) | 18, 239 |
| GsuI | CTGGAG | 1 cut(s) | 150 |
| HaeIII | GGCC | 1 cut(s) | 440 |
| HapII | CCGG | 1 cut(s) | 272 |
| Hin1II | CATG | 1 cut(s) | 481 |
| HinfI | GANTC | 1 cut(s) | 358 |
| HpaII | CCGG | 1 cut(s) | 272 |
| Hpy188I | TCNGA | 3 cut(s) | 351, 459, 492 |
| Hpy188III | TCNNGA | 2 cut(s) | 167, 272 |
| HpyAV | CCTTC | 1 cut(s) | 295 |
| HpyCH4III | ACNGT | 3 cut(s) | 95, 410, 416 |
| HpyCH4IV | ACGT | 1 cut(s) | 171 |
| HpyCH4V | TGCA | 2 cut(s) | 57, 207 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 213 |
| HpySE526I | ACGT | 1 cut(s) | 171 |
| Hsp92II | CATG | 1 cut(s) | 481 |
| Kpn2I | TCCGGA | 1 cut(s) | 271 |
| Ksp22I | TGATCA | 1 cut(s) | 118 |
| Kzo9I | GATC | 3 cut(s) | 118, 274, 454 |
| LmnI | GCTCC | 2 cut(s) | 169, 479 |
| LpnPI | CCDG | 7 cut(s) | 75, 166, 180, 227, 281, 285, 308 |
| Lsp1109I | GCAGC | 1 cut(s) | 225 |
| LweI | GCATC | 1 cut(s) | 44 |
| MaeI | CTAG | 3 cut(s) | 113, 212, 422 |
| MaeII | ACGT | 1 cut(s) | 171 |
| MaeIII | GTNAC | 3 cut(s) | 175, 385, 410 |
| MalI | GATC | 3 cut(s) | 120, 276, 456 |
| MboI | GATC | 3 cut(s) | 118, 274, 454 |
| MboII | GAAGA | 4 cut(s) | 49, 56, 127, 442 |
| MflI | RGATCY | 1 cut(s) | 274 |
| MluCI | AATT | 3 cut(s) | 192, 379, 394 |
| MnlI | CCTC | 6 cut(s) | 44, 143, 149, 196, 310, 430 |
| MroI | TCCGGA | 1 cut(s) | 271 |
| MroXI | GAANNNNTTC | 1 cut(s) | 134 |
| MseI | TTAA | 5 cut(s) | 78, 191, 483, 510, 529 |
| MslI | CAYNNNNRTG | 2 cut(s) | 143, 350 |
| MspI | CCGG | 1 cut(s) | 272 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| MvaI | CCWGG | 1 cut(s) | 296 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 213 |
| NcoI | CCATGG | 1 cut(s) | 477 |
| NdeII | GATC | 3 cut(s) | 118, 274, 454 |
| NlaIII | CATG | 1 cut(s) | 481 |
| NlaIV | GGNNCC | 1 cut(s) | 475 |
| NmuCI | GTSAC | 1 cut(s) | 410 |
| PdmI | GAANNNNTTC | 1 cut(s) | 134 |
| PfeI | GAWTC | 1 cut(s) | 358 |
| PkrI | GCNGC | 2 cut(s) | 19, 240 |
| Psp6I | CCWGG | 1 cut(s) | 294 |
| PspGI | CCWGG | 1 cut(s) | 294 |
| PspN4I | GGNNCC | 1 cut(s) | 475 |
| PsuI | RGATCY | 1 cut(s) | 274 |
| RsaI | GTAC | 1 cut(s) | 499 |
| RsaNI | GTAC | 1 cut(s) | 498 |
| RseI | CAYNNNNRTG | 2 cut(s) | 143, 350 |
| SaqAI | TTAA | 5 cut(s) | 78, 191, 483, 510, 529 |
| SatI | GCNGC | 2 cut(s) | 18, 239 |
| Sau3AI | GATC | 3 cut(s) | 118, 274, 454 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SetI | ASST | 9 cut(s) | 77, 135, 160, 174, 188, 232, 265, 287, 379 |
| SfaNI | GCATC | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 143, 350 |
| SpeI | ACTAGT | 1 cut(s) | 112 |
| Sse9I | AATT | 3 cut(s) | 192, 379, 394 |
| SsiI | CCGC | 1 cut(s) | 17 |
| SspMI | CTAG | 3 cut(s) | 113, 212, 422 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 1 cut(s) | 477 |
| TaaI | ACNGT | 3 cut(s) | 95, 410, 416 |
| TaiI | ACGT | 1 cut(s) | 174 |
| TaqI | TCGA | 2 cut(s) | 90, 453 |
| TasI | AATT | 3 cut(s) | 192, 379, 394 |
| TauI | GCSGC | 1 cut(s) | 20 |
| TfiI | GAWTC | 1 cut(s) | 358 |
| Tru1I | TTAA | 5 cut(s) | 78, 191, 483, 510, 529 |
| Tru9I | TTAA | 5 cut(s) | 78, 191, 483, 510, 529 |
| TscAI | CASTG | 2 cut(s) | 19, 419 |
| TseFI | GTSAC | 1 cut(s) | 410 |
| TseI | GCWGC | 1 cut(s) | 238 |
| Tsp45I | GTSAC | 1 cut(s) | 410 |
| TspDTI | ATGAA | 2 cut(s) | 14, 261 |
| TspGWI | ACGGA | 1 cut(s) | 528 |
| TspRI | CASTG | 2 cut(s) | 19, 419 |
| XmnI | GAANNNNTTC | 1 cut(s) | 134 |
| XspI | CTAG | 3 cut(s) | 113, 212, 422 |