Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Reverse (-)

11718212 .. 11720032

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1128400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGATGTGGGCAACGATTGCTACTTCTTCTTCTTCCTTGAAGGTTGGTTATGGAAGCAGCAGCACCAGAGGTATGCTGCCTTGCCCTCTTCAATCTTCTCCTGTTGTTGTTTTCTTCAACAATTACTTGGCTTTGTTTCACTCTCGAGCTTCTAAATCGACCGAATCTAGAAATACTCAACAACACCATCTTTTGAAAATCAGTAATGTTGAGGATGCTCTCAATGTGTTCGACGAAATGCTTCAAAGGCGTCCTCTGCCTTCCGTTGTCCCTTTCAACCAAATCTTGACTCAACTTGCCAAGATGAAACATTATTCGGCAGTCATCTCCATGAATAACCAAATGGTTGTGTCCGGAATTCGTCCAGATGTTTATACTCTAGCCATTATCATTAATTGCTTCTGTCATCTCAACCAAGTGGAGTTTAGTTTGTCAGTCTTGGGTAACTTCTTCAAATTAGGTTTAGAGCCAGATGTCACGACCTACACCACTCTTATCAACGGCTTTCTTCTTAAGAATAGAGAGGCCGAGGCTGCAGCACTTTTCAATAAAATGTTGGAGAGTGGTAATTGCAAGCCGAATGTGGTTTCTTTCGGCACATTAGTTAAGGGTCTTTGCATGAAGGGTAACAATAGTGCAGCAATCCAATTGCTTAAGAAGATGGAAGAAAATGCTTGCATGCCTAACGTAATTGTCTACAACACGATCATCGACAGTCTTTGCAAGGATGCTCTAGTTGTTGATGCACTGAACCTCTTTTTAGAAATGACGAGTAAGGCCATTGCTCCCGACGTCATTACCTATACCTCTTTGATTCACGGAGCTTGCAAAGTAGGGAAGTGGAAAGAAGCTACAAGATTGTTGAATGAAATGGTGGTGAAACATATCTTTCCAAATGCGCACACCTTCAATGTCTTGGTTGATGCATTCTGCAAAGAGGGGATGGTCCAGGAAGCAAGGAGTGTGGTTGAGATGATGATTCAAAGAGATATCAAACCTAGTACAATCACGTACAATTCGCTTATGGATGGGTATTGTTTGCGAGGAGAAATGGTCGAGGCAAAAGAGGTTTTTGAAGTAATGCTTAGCAAGGCTTTCATGGTTGATGCTCGTGGTTATAACGTAATGATAAACGGCTATTGTAAGTGTAAACGGATAGATGATGCCCAGATGCTTTTTCTGGAAATGTCTCATAAGGGAGTTGTTCCAAATACTATTACTTATAACACTCTTATGGATGGGTTTTGCAAGATGGGAAGAATACGAGATGCACAGAACTTGTTCTCTCAAATGCAAACTTGTGGCCAACTTCCAAATATTCGAACTTATAATATTTTGCTGGATGGCCTTTGTAAAAACCAGCAACTTTCTATGGCAGTTGAACTTTTGGAAGAGATGGAGGGAAAGAAGTTGGATTTTGATATTGTAACTTACAATATTCTTATTGAAGGATTGTGCAAAGCTGAAAAAGTTGAATATGCATGGGATCTTTTTCGTAGTTTATCATCAAAAGGAATTCAACCTAATGTCTTGACATATACCATAATGATTAGTGGATTTTGTAACCGGGGAATAGCAGGCGAAGCAGAAAACTTGCTTAGAGAAATGGAAGAGAAAGGTTGTTGTCCAGATGGTTGCACGTACAACGCAATTATCCGAGGGTTTATCAATAACAATGAGACATCAACGGCGGTGAGGCTTATTCAGGAAATGGTGGAGAGAGGTTTTTCTGCAGATGCATCAACTACGGAGTTGGTCGTTAATTTATTATCTAAAGATAAAGTAGATCCCGCTTTGTTGGCATTTATAGAAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

607

Amino Acids

67.72

Weight (kDa)

6.36

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	87 - 136	1.8e-08	PPR repeat family
PPR_3	PF13812	147 - 203	1.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	154 - 185	4.4e-07	PPR repeat
PPR_2	PF13041	157 - 206	8.9e-12	PPR repeat family
PPR_1	PF12854	190 - 222	2.1e-09	PPR repeat
PPR_3	PF13812	191 - 238	5.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	193 - 242	1.6e-12	PPR repeat family
PPR_long	PF17177	210 - 343	1.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	226 - 257	4.2e-09	PPR repeat
PPR_2	PF13041	228 - 277	5.3e-16	PPR repeat family
MRP-S27	PF10037	246 - 330	1.3e-07	Mitochondrial 28S ribosomal protein S27
PPR_3	PF13812	252 - 311	8.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	261 - 292	5.7e-12	PPR repeat
PPR_2	PF13041	263 - 312	1.5e-17	PPR repeat family
PPR	PF01535	266 - 294	6.7e-07	PPR repeat
PPR_1	PF12854	295 - 326	1.4e-08	PPR repeat
TPR_24	PF23276	300 - 393	3.1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	302 - 346	2.5e-12	PPR repeat family
PPR	PF01535	302 - 331	2e-06	PPR repeat
PPR_1	PF12854	330 - 361	8.4e-10	PPR repeat
PPR_2	PF13041	333 - 376	2.3e-08	PPR repeat family
PPR	PF01535	336 - 364	4.2e-07	PPR repeat
PPR_long	PF17177	350 - 483	4.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	369 - 396	4.8e-07	PPR repeat
PPR_2	PF13041	371 - 417	1.1e-17	PPR repeat family
PPR	PF01535	373 - 401	1.6e-07	PPR repeat
TPR_24	PF23276	398 - 500	1.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	399 - 432	5.7e-14	PPR repeat
PPR_2	PF13041	403 - 452	3.8e-19	PPR repeat family
PPR	PF01535	406 - 435	6.6e-08	PPR repeat
PPR_3	PF13812	427 - 483	4.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	435 - 467	7.3e-10	PPR repeat
PPR_2	PF13041	438 - 487	2e-16	PPR repeat family
PPR	PF01535	442 - 469	1.1e-06	PPR repeat
PPR_1	PF12854	472 - 499	1.1e-08	PPR repeat
PPR_2	PF13041	474 - 522	1.7e-19	PPR repeat family
PPR	PF01535	476 - 506	4.7e-06	PPR repeat
PPR_3	PF13812	497 - 555	5.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	504 - 537	9.1e-11	PPR repeat
PPR	PF01535	512 - 541	9e-07	PPR repeat
PPR_2	PF13041	521 - 555	3.5e-06	PPR repeat family
PPR_1	PF12854	539 - 572	3.5e-06	PPR repeat
PPR_2	PF13041	543 - 588	5.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1119, 1224, 1329
AatII	GACGTC	1 cut(s)	795
Acc16I	TGCGCA	1 cut(s)	900
AccI	GTMKAC	1 cut(s)	696
AccIII	TCCGGA	1 cut(s)	353
AciI	CCGC	2 cut(s)	1691, 1791
AclWI	GGATC	2 cut(s)	1494, 1781
AcoI	YGGCCR	1 cut(s)	1303
AcsI	RAATTY	2 cut(s)	357, 1515
AcyI	GRCGYC	2 cut(s)	250, 792
AfaI	GTAC	3 cut(s)	1003, 1013, 1643
AflII	CTTAAG	2 cut(s)	512, 653
AjnI	CCWGG	1 cut(s)	948
AluBI	AGCT	4 cut(s)	149, 824, 851, 1463
AluI	AGCT	4 cut(s)	149, 824, 851, 1463
Alw26I	GTCTC	2 cut(s)	1194, 1673
AlwI	GGATC	2 cut(s)	1494, 1781
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	353
AoxI	GGCC	4 cut(s)	525, 777, 1303, 1345
ApeKI	GCWGC	6 cut(s)	57, 60, 76, 533, 536, 638
ApoI	RAATTY	2 cut(s)	357, 1515
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	2 cut(s)	240, 1280
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	1 cut(s)	946
AsuC2I	CCSGG	1 cut(s)	1568
AsuHPI	GGTGA	2 cut(s)	889, 1705
AsuII	TTCGAA	1 cut(s)	1321
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	946
BalI	TGGCCA	1 cut(s)	1305
BauI	CACGAG	1 cut(s)	1110
BbvI	GCAGC	6 cut(s)	63, 69, 72, 520, 548, 650
BccI	CCATC	9 cut(s)	195, 655, 937, 1022, 1232, 1246, 1337, 1390, 1625
BceAI	ACGGC	3 cut(s)	517, 1150, 1704
BciT130I	CCWGG	1 cut(s)	950
BcnI	CCSGG	1 cut(s)	1568
BcoDI	GTCTC	2 cut(s)	1194, 1673
BfaI	CTAG	4 cut(s)	168, 380, 734, 999
BfmI	CTRYAG	2 cut(s)	534, 1731
BfrI	CTTAAG	2 cut(s)	512, 653
BisI	GCNGC	6 cut(s)	58, 61, 77, 534, 537, 639
BlpI	GCTNAGC	1 cut(s)	1085
BlsI	GCNGC	6 cut(s)	59, 62, 78, 535, 538, 640
Bme1390I	CCNGG	2 cut(s)	950, 1568
Bme18I	GGWCC	1 cut(s)	946
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	946
BmrFI	CCNGG	2 cut(s)	950, 1568
Bpu1102I	GCTNAGC	1 cut(s)	1085
Bpu14I	TTCGAA	1 cut(s)	1321
BpuMI	CCSGG	1 cut(s)	1568
BsaAI	YACGTR	2 cut(s)	1011, 1641
BsaHI	GRCGYC	2 cut(s)	250, 792
BsaJI	CCNNGG	3 cut(s)	528, 1567, 1657
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	1038, 1068
Bse3DI	GCAATG	1 cut(s)	780
BseAI	TCCGGA	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	950
BseDI	CCNNGG	3 cut(s)	528, 1567, 1657
BseGI	GGATG	6 cut(s)	220, 733, 948, 1033, 1243, 1348
BseMI	GCAATG	1 cut(s)	780
BseRI	GAGGAG	1 cut(s)	1059
BseXI	GCAGC	6 cut(s)	63, 69, 72, 520, 548, 650
BsgI	GTGCAG	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	527, 779, 1305, 1347
BsiEI	CGRYCG	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	354, 1567
BslFI	GGGAC	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	1194, 1673
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	4 cut(s)	527, 779, 1305, 1347
BsoBI	CYCGRG	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	1321
Bsp13I	TCCGGA	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	705, 1486, 1786
Bsp1720I	GCTNAGC	1 cut(s)	1085
BspACI	CCGC	2 cut(s)	1691, 1791
BspANI	GGCC	4 cut(s)	527, 779, 1305, 1347
BspEI	TCCGGA	1 cut(s)	353
BspMAI	CTGCAG	2 cut(s)	538, 1735
BspPI	GGATC	2 cut(s)	1494, 1781
BspT104I	TTCGAA	1 cut(s)	1321
BspTI	CTTAAG	2 cut(s)	512, 653
BsrDI	GCAATG	1 cut(s)	780
BssECI	CCNNGG	3 cut(s)	528, 1567, 1657
BssMI	GATC	3 cut(s)	705, 1486, 1786
BssNI	GRCGYC	2 cut(s)	250, 792
BssSI	CACGAG	1 cut(s)	1110
Bst2BI	CACGAG	1 cut(s)	1110
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	1 cut(s)	716
Bst6I	CTCTTC	3 cut(s)	93, 1386, 1605
BstACI	GRCGYC	2 cut(s)	250, 792
BstAFI	CTTAAG	2 cut(s)	512, 653
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstBAI	YACGTR	2 cut(s)	1011, 1641
BstBI	TTCGAA	1 cut(s)	1321
BstC8I	GCNNGC	5 cut(s)	575, 676, 680, 826, 1579
BstDEI	CTNAG	2 cut(s)	1085, 1598
BstF5I	GGATG	6 cut(s)	220, 733, 948, 1033, 1243, 1348
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	3 cut(s)	708, 1489, 1789
BstMAI	GTCTC	2 cut(s)	1194, 1673
BstMBI	GATC	3 cut(s)	705, 1486, 1786
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 247, 256, 533, 1583, 1799
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	2 cut(s)	948, 1566
BstSFI	CTRYAG	2 cut(s)	534, 1731
BstV1I	GCAGC	6 cut(s)	63, 69, 72, 520, 548, 650
BstX2I	RGATCY	2 cut(s)	1486, 1786
BstYI	RGATCY	2 cut(s)	1486, 1786
BsuRI	GGCC	4 cut(s)	527, 779, 1305, 1347
BtsCI	GGATG	6 cut(s)	220, 733, 948, 1033, 1243, 1348
BtsIMutI	CAGTG	1 cut(s)	746
Cac8I	GCNNGC	5 cut(s)	575, 676, 680, 826, 1579
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	1 cut(s)	946
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	1002, 1012, 1642
CspCI	CAANNNNNGTGG	2 cut(s)	945, 980
CviAII	CATG	6 cut(s)	331, 619, 679, 1099, 1482, 1818
CviQI	GTAC	3 cut(s)	1002, 1012, 1642
DdeI	CTNAG	2 cut(s)	1085, 1598
DpnI	GATC	3 cut(s)	707, 1488, 1788
DpnII	GATC	3 cut(s)	705, 1486, 1786
EaeI	YGGCCR	1 cut(s)	1303
Eam1104I	CTCTTC	3 cut(s)	93, 1386, 1605
EarI	CTCTTC	3 cut(s)	93, 1386, 1605
Eco32I	GATATC	1 cut(s)	991
Eco47I	GGWCC	1 cut(s)	946
Eco88I	CYCGRG	1 cut(s)	144
EcoRI	GAATTC	2 cut(s)	357, 1515
EcoRII	CCWGG	1 cut(s)	948
EcoRV	GATATC	1 cut(s)	991
EcoT22I	ATGCAT	3 cut(s)	928, 1483, 1741
FaeI	CATG	6 cut(s)	334, 622, 682, 1102, 1485, 1821
FalI	AAGNNNNNCTT	2 cut(s)	1068, 1100
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	6 cut(s)	330, 618, 678, 1098, 1481, 1817
FauI	CCCGC	1 cut(s)	1798
FblI	GTMKAC	1 cut(s)	696
Fnu4HI	GCNGC	6 cut(s)	58, 61, 77, 534, 537, 639
FokI	GGATG	6 cut(s)	227, 740, 955, 1040, 1250, 1355
Fsp4HI	GCNGC	6 cut(s)	58, 61, 77, 534, 537, 639
FspAI	RTGCGCAY	1 cut(s)	900
FspBI	CTAG	4 cut(s)	168, 380, 734, 999
FspI	TGCGCA	1 cut(s)	900
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	6 cut(s)	58, 61, 77, 534, 537, 639
HaeIII	GGCC	4 cut(s)	527, 779, 1305, 1347
HapII	CCGG	2 cut(s)	354, 1567
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	901
Hin1I	GRCGYC	2 cut(s)	250, 792
Hin1II	CATG	6 cut(s)	334, 622, 682, 1102, 1485, 1821
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HinfI	GANTC	4 cut(s)	164, 289, 814, 979
HpaII	CCGG	2 cut(s)	354, 1567
HphI	GGTGA	2 cut(s)	889, 1705
Hpy166II	GTNNAC	2 cut(s)	697, 1151
Hpy188I	TCNGA	1 cut(s)	1658
Hpy8I	GTNNAC	2 cut(s)	697, 1151
Hpy99I	CGWCG	2 cut(s)	236, 794
HpyAV	CCTTC	5 cut(s)	34, 270, 616, 916, 1442
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	5 cut(s)	687, 792, 1010, 1122, 1640
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 247, 256, 533, 1583, 1799
HpyF3I	CTNAG	2 cut(s)	1085, 1598
HpySE526I	ACGT	5 cut(s)	687, 792, 1010, 1122, 1640
Hsp92I	GRCGYC	2 cut(s)	250, 792
Hsp92II	CATG	6 cut(s)	334, 622, 682, 1102, 1485, 1821
HspAI	GCGC	1 cut(s)	899
Kpn2I	TCCGGA	1 cut(s)	353
Kzo9I	GATC	3 cut(s)	705, 1486, 1786
LmnI	GCTCC	2 cut(s)	790, 821
Lsp1109I	GCAGC	6 cut(s)	63, 69, 72, 520, 548, 650
MaeI	CTAG	4 cut(s)	168, 380, 734, 999
MaeII	ACGT	5 cut(s)	687, 792, 1010, 1122, 1640
MaeIII	GTNAC	5 cut(s)	443, 475, 626, 1426, 1562
MalI	GATC	3 cut(s)	707, 1488, 1788
MboI	GATC	3 cut(s)	705, 1486, 1786
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	2 cut(s)	1486, 1786
MlsI	TGGCCA	1 cut(s)	1305
MluNI	TGGCCA	1 cut(s)	1305
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	537, 1392
Mox20I	TGGCCA	1 cut(s)	1305
Mph1103I	ATGCAT	3 cut(s)	928, 1483, 1741
MroI	TCCGGA	1 cut(s)	353
MroXI	GAANNNNTTC	2 cut(s)	240, 1280
MscI	TGGCCA	1 cut(s)	1305
MseI	TTAA	5 cut(s)	393, 513, 606, 654, 1761
MslI	CAYNNNNRTG	2 cut(s)	329, 1232
Msp20I	TGGCCA	1 cut(s)	1305
MspCI	CTTAAG	2 cut(s)	512, 653
MspI	CCGG	2 cut(s)	354, 1567
MspR9I	CCNGG	2 cut(s)	950, 1568
MunI	CAATTG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	950
MwoI	GCNNNNNNNGC	6 cut(s)	17, 247, 256, 533, 1583, 1799
NciI	CCSGG	1 cut(s)	1568
NdeII	GATC	3 cut(s)	705, 1486, 1786
NlaIII	CATG	6 cut(s)	334, 622, 682, 1102, 1485, 1821
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	475
NsbI	TGCGCA	1 cut(s)	900
NsiI	ATGCAT	3 cut(s)	928, 1483, 1741
NspI	RCATGY	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	1321
PaeI	GCATGC	1 cut(s)	682
PaeR7I	CTCGAG	1 cut(s)	144
PctI	GAATGC	1 cut(s)	926
PdmI	GAANNNNTTC	2 cut(s)	240, 1280
PfeI	GAWTC	3 cut(s)	164, 814, 979
PfoI	TCCNGGA	1 cut(s)	948
PkrI	GCNGC	6 cut(s)	59, 62, 78, 535, 538, 640
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	2 cut(s)	1011, 1641
PshBI	ATTAAT	1 cut(s)	393
PsiI	TTATAA	3 cut(s)	1119, 1224, 1329
Psp6I	CCWGG	1 cut(s)	948
PspGI	CCWGG	1 cut(s)	948
PspPI	GGNCC	1 cut(s)	946
PstI	CTGCAG	2 cut(s)	538, 1735
PsuI	RGATCY	2 cut(s)	1486, 1786
RsaI	GTAC	3 cut(s)	1003, 1013, 1643
RsaNI	GTAC	3 cut(s)	1002, 1012, 1642
RseI	CAYNNNNRTG	2 cut(s)	329, 1232
SaqAI	TTAA	5 cut(s)	393, 513, 606, 654, 1761
SatI	GCNGC	6 cut(s)	58, 61, 77, 534, 537, 639
Sau3AI	GATC	3 cut(s)	705, 1486, 1786
Sau96I	GGNCC	1 cut(s)	946
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	950, 1568
SfcI	CTRYAG	2 cut(s)	534, 1731
Sfr274I	CTCGAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	1321
SinI	GGWCC	1 cut(s)	946
SlaI	CTCGAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	329, 1232
SmlI	CTYRAG	3 cut(s)	144, 512, 653
SmoI	CTYRAG	3 cut(s)	144, 512, 653
SphI	GCATGC	1 cut(s)	682
SsiI	CCGC	2 cut(s)	1691, 1791
SspI	AATATT	3 cut(s)	1318, 1333, 1438
SspMI	CTAG	4 cut(s)	168, 380, 734, 999
StyD4I	CCNGG	2 cut(s)	948, 1566
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	5 cut(s)	690, 795, 1013, 1125, 1643
TaqI	TCGA	6 cut(s)	145, 158, 231, 711, 1056, 1321
TaqII	GACCGA	1 cut(s)	176
TatI	WGTACW	1 cut(s)	1001
TfiI	GAWTC	3 cut(s)	164, 814, 979
Tru1I	TTAA	5 cut(s)	393, 513, 606, 654, 1761
Tru9I	TTAA	5 cut(s)	393, 513, 606, 654, 1761
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	6 cut(s)	57, 60, 76, 533, 536, 638
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	5 cut(s)	320, 347, 635, 882, 1087
TspGWI	ACGGA	4 cut(s)	253, 834, 1168, 1763
TspRI	CASTG	1 cut(s)	753
Vha464I	CTTAAG	2 cut(s)	512, 653
VpaK11BI	GGWCC	1 cut(s)	946
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	2 cut(s)	357, 1515
XbaI	TCTAGA	1 cut(s)	167
XceI	RCATGY	1 cut(s)	682
XhoI	CTCGAG	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	696
XmnI	GAANNNNTTC	2 cut(s)	240, 1280
XspI	CTAG	4 cut(s)	168, 380, 734, 999
ZraI	GACGTC	1 cut(s)	793
Zsp2I	ATGCAT	3 cut(s)	928, 1483, 1741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.