Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 1 - 32 | 1.4e-08 | PPR repeat family |
| PPR_long | PF17177 | 4 - 131 | 2.5e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 14 - 46 | 8.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 19 - 67 | 1.5e-19 | PPR repeat family |
| PPR | PF01535 | 22 - 51 | 1.4e-08 | PPR repeat |
| PPR_3 | PF13812 | 42 - 98 | 1.7e-09 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 47 - 150 | 3.2e-10 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 49 - 81 | 4.7e-15 | PPR repeat |
| PPR_2 | PF13041 | 53 - 102 | 1.5e-20 | PPR repeat family |
| PPR | PF01535 | 56 - 85 | 1.2e-08 | PPR repeat |
| PPR_1 | PF12854 | 85 - 117 | 4.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 88 - 137 | 1.8e-17 | PPR repeat family |
| PPR | PF01535 | 92 - 119 | 4.3e-07 | PPR repeat |
| PPR_3 | PF13812 | 112 - 170 | 5.2e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 122 - 149 | 4.2e-09 | PPR repeat |
| PPR_2 | PF13041 | 124 - 172 | 1.9e-18 | PPR repeat family |
| PPR | PF01535 | 126 - 156 | 7.7e-07 | PPR repeat |
| PPR_1 | PF12854 | 154 - 187 | 1.8e-10 | PPR repeat |
| PPR | PF01535 | 162 - 190 | 3.7e-06 | PPR repeat |
| PPR_2 | PF13041 | 162 - 204 | 1.9e-11 | PPR repeat family |
| PPR_1 | PF12854 | 189 - 222 | 3.9e-06 | PPR repeat |
| PPR_2 | PF13041 | 193 - 232 | 5.8e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 69, 174 |
| AciI | CCGC | 2 cut(s) | 641, 698 |
| AclWI | GGATC | 1 cut(s) | 444 |
| AcsI | RAATTY | 2 cut(s) | 465, 719 |
| AfaI | GTAC | 1 cut(s) | 593 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 461 |
| AflIII | ACRYGT | 1 cut(s) | 527 |
| AgsI | TTSAA | 7 cut(s) | 272, 332, 398, 425, 470, 619, 656 |
| AluBI | AGCT | 1 cut(s) | 543 |
| AluI | AGCT | 1 cut(s) | 543 |
| Alw26I | GTCTC | 1 cut(s) | 144 |
| AlwI | GGATC | 1 cut(s) | 444 |
| AoxI | GGCC | 1 cut(s) | 295 |
| ApoI | RAATTY | 2 cut(s) | 465, 719 |
| AsuC2I | CCSGG | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 1 cut(s) | 655 |
| BccI | CCATC | 6 cut(s) | 182, 196, 287, 340, 463, 575 |
| BcnI | CCSGG | 1 cut(s) | 118 |
| BcoDI | GTCTC | 1 cut(s) | 144 |
| BfaI | CTAG | 1 cut(s) | 713 |
| BfmI | CTRYAG | 1 cut(s) | 681 |
| Bme1390I | CCNGG | 1 cut(s) | 118 |
| BmrFI | CCNGG | 1 cut(s) | 118 |
| BmsI | GCATC | 6 cut(s) | 46, 103, 111, 208, 676, 698 |
| BpmI | CTGGAG | 1 cut(s) | 561 |
| Bpu10I | CCTNAGC | 1 cut(s) | 548 |
| BpuMI | CCSGG | 1 cut(s) | 118 |
| Bsa29I | ATCGAT | 1 cut(s) | 708 |
| BsaAI | YACGTR | 1 cut(s) | 591 |
| BsaJI | CCNNGG | 1 cut(s) | 321 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 461 |
| Bse1I | ACTGG | 1 cut(s) | 294 |
| BseCI | ATCGAT | 1 cut(s) | 708 |
| BseDI | CCNNGG | 1 cut(s) | 321 |
| BseGI | GGATG | 3 cut(s) | 10, 126, 298 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 461 |
| BseNI | ACTGG | 1 cut(s) | 294 |
| BshFI | GGCC | 1 cut(s) | 297 |
| BshVI | ATCGAT | 1 cut(s) | 708 |
| BsiSI | CCGG | 1 cut(s) | 118 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 461 |
| BsmAI | GTCTC | 1 cut(s) | 144 |
| BsnI | GGCC | 1 cut(s) | 297 |
| Bsp143I | GATC | 3 cut(s) | 436, 705, 709 |
| BspACI | CCGC | 2 cut(s) | 641, 698 |
| BspANI | GGCC | 1 cut(s) | 297 |
| BspDI | ATCGAT | 1 cut(s) | 708 |
| BspMAI | CTGCAG | 1 cut(s) | 685 |
| BspPI | GGATC | 1 cut(s) | 444 |
| BsrI | ACTGG | 1 cut(s) | 294 |
| BssECI | CCNNGG | 1 cut(s) | 321 |
| BssMI | GATC | 3 cut(s) | 436, 705, 709 |
| BssT1I | CCWWGG | 1 cut(s) | 321 |
| Bst4CI | ACNGT | 1 cut(s) | 612 |
| Bst6I | CTCTTC | 2 cut(s) | 336, 555 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 45, 695 |
| BstBAI | YACGTR | 1 cut(s) | 591 |
| BstC8I | GCNNGC | 1 cut(s) | 545 |
| BstDEI | CTNAG | 1 cut(s) | 548 |
| BstF5I | GGATG | 3 cut(s) | 10, 126, 298 |
| BstKTI | GATC | 3 cut(s) | 439, 708, 712 |
| BstMAI | GTCTC | 1 cut(s) | 144 |
| BstMBI | GATC | 3 cut(s) | 436, 705, 709 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 45, 695 |
| BstNSI | RCATGY | 1 cut(s) | 531 |
| BstSCI | CCNGG | 1 cut(s) | 116 |
| BstSFI | CTRYAG | 1 cut(s) | 681 |
| BstX2I | RGATCY | 1 cut(s) | 436 |
| BstYI | RGATCY | 1 cut(s) | 436 |
| Bsu15I | ATCGAT | 1 cut(s) | 708 |
| BsuRI | GGCC | 1 cut(s) | 297 |
| BsuTUI | ATCGAT | 1 cut(s) | 708 |
| BtsCI | GGATG | 3 cut(s) | 10, 126, 298 |
| Cac8I | GCNNGC | 1 cut(s) | 545 |
| ClaI | ATCGAT | 1 cut(s) | 708 |
| Csp6I | GTAC | 1 cut(s) | 592 |
| CviAII | CATG | 3 cut(s) | 49, 432, 528 |
| CviJI | RGCY | 6 cut(s) | 87, 297, 413, 523, 543, 649 |
| CviKI_1 | RGCY | 6 cut(s) | 87, 297, 413, 523, 543, 649 |
| CviQI | GTAC | 1 cut(s) | 592 |
| DdeI | CTNAG | 1 cut(s) | 548 |
| DpnI | GATC | 3 cut(s) | 438, 707, 711 |
| DpnII | GATC | 3 cut(s) | 436, 705, 709 |
| Eam1104I | CTCTTC | 2 cut(s) | 336, 555 |
| EarI | CTCTTC | 2 cut(s) | 336, 555 |
| Eco130I | CCWWGG | 1 cut(s) | 321 |
| EcoRI | GAATTC | 1 cut(s) | 465 |
| EcoT14I | CCWWGG | 1 cut(s) | 321 |
| EcoT22I | ATGCAT | 3 cut(s) | 246, 433, 691 |
| ErhI | CCWWGG | 1 cut(s) | 321 |
| FaeI | CATG | 3 cut(s) | 52, 435, 531 |
| FatI | CATG | 3 cut(s) | 48, 431, 527 |
| FokI | GGATG | 3 cut(s) | 17, 133, 305 |
| FspBI | CTAG | 1 cut(s) | 713 |
| GsuI | CTGGAG | 1 cut(s) | 561 |
| HaeIII | GGCC | 1 cut(s) | 297 |
| HapII | CCGG | 1 cut(s) | 118 |
| Hin1II | CATG | 3 cut(s) | 52, 435, 531 |
| HincII | GTYRAC | 1 cut(s) | 257 |
| HindII | GTYRAC | 1 cut(s) | 257 |
| HindIII | AAGCTT | 1 cut(s) | 541 |
| HpaII | CCGG | 1 cut(s) | 118 |
| HphI | GGTGA | 1 cut(s) | 655 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 257 |
| Hpy188I | TCNGA | 1 cut(s) | 608 |
| Hpy188III | TCNNGA | 3 cut(s) | 131, 578, 656 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 257 |
| Hpy99I | CGWCG | 1 cut(s) | 612 |
| HpyCH4III | ACNGT | 1 cut(s) | 612 |
| HpyCH4IV | ACGT | 3 cut(s) | 27, 275, 590 |
| HpyCH4V | TGCA | 8 cut(s) | 48, 198, 221, 244, 431, 588, 683, 689 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 45, 695 |
| HpyF3I | CTNAG | 1 cut(s) | 548 |
| HpySE526I | ACGT | 3 cut(s) | 27, 275, 590 |
| Hsp92II | CATG | 3 cut(s) | 52, 435, 531 |
| Kzo9I | GATC | 3 cut(s) | 436, 705, 709 |
| LpnPI | CCDG | 6 cut(s) | 116, 131, 275, 466, 486, 591 |
| LweI | GCATC | 6 cut(s) | 46, 103, 111, 208, 676, 698 |
| MaeI | CTAG | 1 cut(s) | 713 |
| MaeII | ACGT | 3 cut(s) | 27, 275, 590 |
| MaeIII | GTNAC | 2 cut(s) | 166, 376 |
| MalI | GATC | 3 cut(s) | 438, 707, 711 |
| MboI | GATC | 3 cut(s) | 436, 705, 709 |
| MboII | GAAGA | 3 cut(s) | 219, 353, 572 |
| MflI | RGATCY | 1 cut(s) | 436 |
| MluCI | AATT | 6 cut(s) | 150, 314, 332, 465, 600, 719 |
| MmeI | TCCRAC | 3 cut(s) | 318, 342, 631 |
| MnlI | CCTC | 4 cut(s) | 343, 560, 639, 663 |
| Mph1103I | ATGCAT | 3 cut(s) | 246, 433, 691 |
| MseI | TTAA | 1 cut(s) | 99 |
| MspI | CCGG | 1 cut(s) | 118 |
| MspR9I | CCNGG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 45, 695 |
| NciI | CCSGG | 1 cut(s) | 118 |
| NdeII | GATC | 3 cut(s) | 436, 705, 709 |
| NlaIII | CATG | 3 cut(s) | 52, 435, 531 |
| NsiI | ATGCAT | 3 cut(s) | 246, 433, 691 |
| NspI | RCATGY | 1 cut(s) | 531 |
| PciI | ACATGT | 1 cut(s) | 527 |
| Ppu21I | YACGTR | 1 cut(s) | 591 |
| PscI | ACATGT | 1 cut(s) | 527 |
| PsiI | TTATAA | 2 cut(s) | 69, 174 |
| PstI | CTGCAG | 1 cut(s) | 685 |
| PsuI | RGATCY | 1 cut(s) | 436 |
| RsaI | GTAC | 1 cut(s) | 593 |
| RsaNI | GTAC | 1 cut(s) | 592 |
| SaqAI | TTAA | 1 cut(s) | 99 |
| Sau3AI | GATC | 3 cut(s) | 436, 705, 709 |
| ScrFI | CCNGG | 1 cut(s) | 118 |
| SetI | ASST | 9 cut(s) | 21, 30, 256, 278, 403, 475, 545, 571, 593 |
| SfaNI | GCATC | 6 cut(s) | 46, 103, 111, 208, 676, 698 |
| SfcI | CTRYAG | 1 cut(s) | 681 |
| Sse9I | AATT | 6 cut(s) | 150, 314, 332, 465, 600, 719 |
| SsiI | CCGC | 2 cut(s) | 641, 698 |
| SspI | AATATT | 2 cut(s) | 283, 388 |
| SspMI | CTAG | 1 cut(s) | 713 |
| StyD4I | CCNGG | 1 cut(s) | 116 |
| StyI | CCWWGG | 1 cut(s) | 321 |
| TaaI | ACNGT | 1 cut(s) | 612 |
| TaiI | ACGT | 3 cut(s) | 30, 278, 593 |
| TaqI | TCGA | 1 cut(s) | 708 |
| TasI | AATT | 6 cut(s) | 150, 314, 332, 465, 600, 719 |
| Tru1I | TTAA | 1 cut(s) | 99 |
| Tru9I | TTAA | 1 cut(s) | 99 |
| XapI | RAATTY | 2 cut(s) | 465, 719 |
| XceI | RCATGY | 1 cut(s) | 531 |
| XspI | CTAG | 1 cut(s) | 713 |
| Zsp2I | ATGCAT | 3 cut(s) | 246, 433, 691 |