Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 332 |
| AccIII | TCCGGA | 2 cut(s) | 565, 607 |
| AciI | CCGC | 1 cut(s) | 52 |
| AcuI | CTGAAG | 1 cut(s) | 187 |
| AgsI | TTSAA | 8 cut(s) | 75, 85, 112, 190, 232, 245, 373, 596 |
| AluBI | AGCT | 2 cut(s) | 207, 419 |
| AluI | AGCT | 2 cut(s) | 207, 419 |
| Aor13HI | TCCGGA | 2 cut(s) | 565, 607 |
| ApeKI | GCWGC | 3 cut(s) | 311, 334, 416 |
| AseI | ATTAAT | 1 cut(s) | 171 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 35, 533 |
| AsuHPI | GGTGA | 1 cut(s) | 316 |
| AxyI | CCTNAGG | 1 cut(s) | 306 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 498, 531 |
| BbsI | GAAGAC | 1 cut(s) | 233 |
| BbvI | GCAGC | 3 cut(s) | 298, 321, 428 |
| BccI | CCATC | 2 cut(s) | 433, 491 |
| BceAI | ACGGC | 1 cut(s) | 295 |
| BciVI | GTATCC | 1 cut(s) | 499 |
| BfmI | CTRYAG | 1 cut(s) | 335 |
| BfuAI | ACCTGC | 1 cut(s) | 332 |
| BfuI | GTATCC | 1 cut(s) | 499 |
| BisI | GCNGC | 3 cut(s) | 312, 335, 417 |
| BlsI | GCNGC | 3 cut(s) | 313, 336, 418 |
| BmsI | GCATC | 2 cut(s) | 443, 511 |
| BpiI | GAAGAC | 1 cut(s) | 233 |
| BsaWI | WCCGGW | 2 cut(s) | 565, 607 |
| Bse21I | CCTNAGG | 1 cut(s) | 306 |
| Bse3DI | GCAATG | 1 cut(s) | 531 |
| BseAI | TCCGGA | 2 cut(s) | 565, 607 |
| BseGI | GGATG | 3 cut(s) | 15, 458, 574 |
| BseMI | GCAATG | 1 cut(s) | 531 |
| BseMII | CTCAG | 2 cut(s) | 297, 552 |
| BseXI | GCAGC | 3 cut(s) | 298, 321, 428 |
| BsgI | GTGCAG | 1 cut(s) | 297 |
| BsiSI | CCGG | 2 cut(s) | 566, 608 |
| BslFI | GGGAC | 1 cut(s) | 52 |
| BsmFI | GGGAC | 1 cut(s) | 52 |
| Bsp13I | TCCGGA | 2 cut(s) | 565, 607 |
| Bsp143I | GATC | 1 cut(s) | 399 |
| BspACI | CCGC | 1 cut(s) | 52 |
| BspCNI | CTCAG | 2 cut(s) | 298, 551 |
| BspEI | TCCGGA | 2 cut(s) | 565, 607 |
| BspMAI | CTGCAG | 1 cut(s) | 339 |
| BspMI | ACCTGC | 1 cut(s) | 332 |
| BsrDI | GCAATG | 1 cut(s) | 531 |
| BssMI | GATC | 1 cut(s) | 399 |
| Bst4CI | ACNGT | 2 cut(s) | 225, 494 |
| Bst6I | CTCTTC | 1 cut(s) | 539 |
| BstC8I | GCNNGC | 3 cut(s) | 15, 339, 458 |
| BstDEI | CTNAG | 3 cut(s) | 217, 306, 538 |
| BstF5I | GGATG | 3 cut(s) | 15, 458, 574 |
| BstKTI | GATC | 1 cut(s) | 402 |
| BstMBI | GATC | 1 cut(s) | 399 |
| BstNSI | RCATGY | 1 cut(s) | 21 |
| BstSFI | CTRYAG | 1 cut(s) | 335 |
| BstV1I | GCAGC | 3 cut(s) | 298, 321, 428 |
| BstV2I | GAAGAC | 1 cut(s) | 233 |
| Bsu36I | CCTNAGG | 1 cut(s) | 306 |
| BsuI | GTATCC | 1 cut(s) | 499 |
| BtsCI | GGATG | 3 cut(s) | 15, 458, 574 |
| BveI | ACCTGC | 1 cut(s) | 332 |
| Cac8I | GCNNGC | 3 cut(s) | 15, 339, 458 |
| CviAII | CATG | 3 cut(s) | 18, 28, 397 |
| CviJI | RGCY | 8 cut(s) | 201, 207, 282, 311, 355, 390, 419, 460 |
| CviKI_1 | RGCY | 8 cut(s) | 201, 207, 282, 311, 355, 390, 419, 460 |
| DdeI | CTNAG | 3 cut(s) | 217, 306, 538 |
| DpnI | GATC | 1 cut(s) | 401 |
| DpnII | GATC | 1 cut(s) | 399 |
| Eam1104I | CTCTTC | 1 cut(s) | 539 |
| EarI | CTCTTC | 1 cut(s) | 539 |
| EciI | GGCGGA | 1 cut(s) | 41 |
| Eco57I | CTGAAG | 1 cut(s) | 187 |
| Eco81I | CCTNAGG | 1 cut(s) | 306 |
| FaeI | CATG | 3 cut(s) | 21, 31, 400 |
| FaiI | YATR | 6 cut(s) | 19, 29, 104, 398, 467, 635 |
| FaqI | GGGAC | 1 cut(s) | 52 |
| FatI | CATG | 3 cut(s) | 17, 27, 396 |
| Fnu4HI | GCNGC | 3 cut(s) | 312, 335, 417 |
| FokI | GGATG | 3 cut(s) | 22, 465, 581 |
| Fsp4HI | GCNGC | 3 cut(s) | 312, 335, 417 |
| GluI | GCNGC | 3 cut(s) | 312, 335, 417 |
| HapII | CCGG | 2 cut(s) | 566, 608 |
| Hin1II | CATG | 3 cut(s) | 21, 31, 400 |
| HinfI | GANTC | 2 cut(s) | 190, 592 |
| HpaII | CCGG | 2 cut(s) | 566, 608 |
| HphI | GGTGA | 1 cut(s) | 316 |
| Hpy166II | GTNNAC | 1 cut(s) | 366 |
| Hpy188I | TCNGA | 2 cut(s) | 404, 541 |
| Hpy188III | TCNNGA | 3 cut(s) | 143, 566, 608 |
| Hpy8I | GTNNAC | 1 cut(s) | 366 |
| HpyAV | CCTTC | 1 cut(s) | 271 |
| HpyCH4III | ACNGT | 2 cut(s) | 225, 494 |
| HpyCH4V | TGCA | 8 cut(s) | 17, 98, 314, 337, 396, 416, 501, 524 |
| HpyF3I | CTNAG | 3 cut(s) | 217, 306, 538 |
| Hsp92II | CATG | 3 cut(s) | 21, 31, 400 |
| Kpn2I | TCCGGA | 2 cut(s) | 565, 607 |
| Kzo9I | GATC | 1 cut(s) | 399 |
| LmnI | GCTCC | 2 cut(s) | 568, 610 |
| LpnPI | CCDG | 8 cut(s) | 27, 156, 261, 318, 323, 327, 579, 621 |
| Lsp1109I | GCAGC | 3 cut(s) | 298, 321, 428 |
| LweI | GCATC | 2 cut(s) | 443, 511 |
| MaeIII | GTNAC | 3 cut(s) | 426, 469, 574 |
| MalI | GATC | 1 cut(s) | 401 |
| MboI | GATC | 1 cut(s) | 399 |
| MboII | GAAGA | 5 cut(s) | 220, 233, 448, 455, 526 |
| MluCI | AATT | 4 cut(s) | 80, 135, 172, 233 |
| MnlI | CCTC | 6 cut(s) | 59, 301, 443, 542, 548, 595 |
| MroI | TCCGGA | 2 cut(s) | 565, 607 |
| MroXI | GAANNNNTTC | 2 cut(s) | 35, 533 |
| MseI | TTAA | 4 cut(s) | 159, 171, 477, 489 |
| MslI | CAYNNNNRTG | 1 cut(s) | 329 |
| MspI | CCGG | 2 cut(s) | 566, 608 |
| NdeII | GATC | 1 cut(s) | 399 |
| NlaIII | CATG | 3 cut(s) | 21, 31, 400 |
| NspI | RCATGY | 1 cut(s) | 21 |
| PdmI | GAANNNNTTC | 2 cut(s) | 35, 533 |
| PfeI | GAWTC | 2 cut(s) | 190, 592 |
| PkrI | GCNGC | 3 cut(s) | 313, 336, 418 |
| PshBI | ATTAAT | 1 cut(s) | 171 |
| PstI | CTGCAG | 1 cut(s) | 339 |
| RseI | CAYNNNNRTG | 1 cut(s) | 329 |
| SaqAI | TTAA | 4 cut(s) | 159, 171, 477, 489 |
| SatI | GCNGC | 3 cut(s) | 312, 335, 417 |
| Sau3AI | GATC | 1 cut(s) | 399 |
| SetI | ASST | 9 cut(s) | 209, 263, 346, 421, 476, 534, 559, 587, 601 |
| SfaNI | GCATC | 2 cut(s) | 443, 511 |
| SfcI | CTRYAG | 1 cut(s) | 335 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 329 |
| Sse9I | AATT | 4 cut(s) | 80, 135, 172, 233 |
| SsiI | CCGC | 1 cut(s) | 52 |
| TaaI | ACNGT | 2 cut(s) | 225, 494 |
| TasI | AATT | 4 cut(s) | 80, 135, 172, 233 |
| TfiI | GAWTC | 2 cut(s) | 190, 592 |
| Tru1I | TTAA | 4 cut(s) | 159, 171, 477, 489 |
| Tru9I | TTAA | 4 cut(s) | 159, 171, 477, 489 |
| TseI | GCWGC | 3 cut(s) | 311, 334, 416 |
| TspDTI | ATGAA | 2 cut(s) | 44, 542 |
| VspI | ATTAAT | 1 cut(s) | 171 |
| XceI | RCATGY | 1 cut(s) | 21 |
| XmnI | GAANNNNTTC | 2 cut(s) | 35, 533 |