Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 125 - 165 | 3.6e-08 | PPR repeat family |
| PPR_1 | PF12854 | 150 - 182 | 1.1e-08 | PPR repeat |
| PPR_2 | PF13041 | 153 - 202 | 2.8e-13 | PPR repeat family |
| PPR_3 | PF13812 | 187 - 234 | 5e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 187 - 218 | 7.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 189 - 238 | 1.7e-15 | PPR repeat family |
| PPR_1 | PF12854 | 220 - 253 | 3.3e-12 | PPR repeat |
| PPR_2 | PF13041 | 224 - 273 | 6.1e-17 | PPR repeat family |
| PPR | PF01535 | 227 - 257 | 1.7e-06 | PPR repeat |
| PPR_long | PF17177 | 242 - 355 | 2.6e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 248 - 306 | 4.7e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 255 - 287 | 9e-10 | PPR repeat |
| MRP-S27 | PF10037 | 263 - 325 | 4.5e-08 | Mitochondrial 28S ribosomal protein S27 |
| PPR_2 | PF13041 | 266 - 308 | 4.2e-12 | PPR repeat family |
| PPR_1 | PF12854 | 291 - 322 | 4.1e-10 | PPR repeat |
| PPR_2 | PF13041 | 294 - 342 | 2.3e-16 | PPR repeat family |
| PPR_1 | PF12854 | 325 - 355 | 1e-11 | PPR repeat |
| PPR_2 | PF13041 | 329 - 378 | 2.3e-14 | PPR repeat family |
| PPR | PF01535 | 332 - 362 | 9.5e-08 | PPR repeat |
| PPR_3 | PF13812 | 353 - 410 | 5.8e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 360 - 392 | 2.9e-06 | PPR repeat |
| PPR_2 | PF13041 | 365 - 413 | 3.8e-17 | PPR repeat family |
| PPR | PF01535 | 368 - 397 | 1e-06 | PPR repeat |
| PPR_1 | PF12854 | 395 - 427 | 3.8e-16 | PPR repeat |
| PPR | PF01535 | 402 - 429 | 2.5e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1318 |
| AatII | GACGTC | 1 cut(s) | 241 |
| Acc16I | TGCGCA | 1 cut(s) | 17 |
| AccII | CGCG | 1 cut(s) | 608 |
| AclI | AACGTT | 1 cut(s) | 780 |
| AcoI | YGGCCR | 3 cut(s) | 369, 861, 1292 |
| AcsI | RAATTY | 2 cut(s) | 322, 345 |
| AcuI | CTGAAG | 2 cut(s) | 215, 230 |
| AcyI | GRCGYC | 1 cut(s) | 238 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 748, 1184 |
| AjnI | CCWGG | 1 cut(s) | 903 |
| AluBI | AGCT | 7 cut(s) | 60, 214, 795, 839, 1104, 1241, 1287 |
| AluI | AGCT | 7 cut(s) | 60, 214, 795, 839, 1104, 1241, 1287 |
| Alw26I | GTCTC | 2 cut(s) | 229, 1240 |
| AoxI | GGCC | 5 cut(s) | 369, 429, 823, 861, 1292 |
| ApeKI | GCWGC | 3 cut(s) | 57, 521, 626 |
| ApoI | RAATTY | 2 cut(s) | 322, 345 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 215, 228, 743 |
| AspLEI | GCGC | 3 cut(s) | 18, 608, 916 |
| AspS9I | GGNCC | 1 cut(s) | 430 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 457, 883 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 708, 741 |
| BalI | TGGCCA | 3 cut(s) | 371, 863, 1294 |
| BbsI | GAAGAC | 1 cut(s) | 443 |
| BbvI | GCAGC | 3 cut(s) | 69, 533, 613 |
| BccI | CCATC | 2 cut(s) | 643, 1220 |
| BceAI | ACGGC | 2 cut(s) | 232, 505 |
| BciT130I | CCWGG | 1 cut(s) | 905 |
| BclI | TGATCA | 1 cut(s) | 1147 |
| BcoDI | GTCTC | 2 cut(s) | 229, 1240 |
| BfaI | CTAG | 2 cut(s) | 183, 821 |
| BfmI | CTRYAG | 4 cut(s) | 61, 685, 1105, 1210 |
| BisI | GCNGC | 3 cut(s) | 58, 522, 627 |
| BlsI | GCNGC | 3 cut(s) | 59, 523, 628 |
| Bme1390I | CCNGG | 1 cut(s) | 905 |
| BmgT120I | GGNCC | 1 cut(s) | 430 |
| BmiI | GGNNCC | 2 cut(s) | 172, 279 |
| BmrFI | CCNGG | 1 cut(s) | 905 |
| BmsI | GCATC | 4 cut(s) | 3, 193, 653, 901 |
| BpiI | GAAGAC | 1 cut(s) | 443 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 226, 258 |
| BpmI | CTGGAG | 1 cut(s) | 168 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BsaHI | GRCGYC | 1 cut(s) | 238 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 748, 1184 |
| Bse1I | ACTGG | 3 cut(s) | 726, 833, 1119 |
| BseBI | CCWGG | 1 cut(s) | 905 |
| BseGI | GGATG | 2 cut(s) | 574, 668 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 748, 1184 |
| BseMII | CTCAG | 2 cut(s) | 20, 281 |
| BseNI | ACTGG | 3 cut(s) | 726, 833, 1119 |
| BseRI | GAGGAG | 1 cut(s) | 1047 |
| BseXI | GCAGC | 3 cut(s) | 69, 533, 613 |
| BseYI | CCCAGC | 1 cut(s) | 1241 |
| Bsh1236I | CGCG | 1 cut(s) | 608 |
| BshFI | GGCC | 5 cut(s) | 371, 431, 825, 863, 1294 |
| BsiSI | CCGG | 1 cut(s) | 566 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 748, 1184 |
| BsmAI | GTCTC | 2 cut(s) | 229, 1240 |
| BsmBI | CGTCTC | 1 cut(s) | 229 |
| BsnI | GGCC | 5 cut(s) | 371, 431, 825, 863, 1294 |
| Bsp143I | GATC | 2 cut(s) | 1063, 1147 |
| BspANI | GGCC | 5 cut(s) | 371, 431, 825, 863, 1294 |
| BspCNI | CTCAG | 2 cut(s) | 21, 280 |
| BspFNI | CGCG | 1 cut(s) | 608 |
| BspLI | GGNNCC | 2 cut(s) | 172, 279 |
| BsrI | ACTGG | 3 cut(s) | 726, 833, 1119 |
| BssMI | GATC | 2 cut(s) | 1063, 1147 |
| BssNI | GRCGYC | 1 cut(s) | 238 |
| Bst2UI | CCWGG | 1 cut(s) | 905 |
| Bst4CI | ACNGT | 5 cut(s) | 65, 310, 392, 1019, 1025 |
| Bst6I | CTCTTC | 2 cut(s) | 67, 749 |
| BstACI | GRCGYC | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 2 cut(s) | 668, 942 |
| BstDEI | CTNAG | 2 cut(s) | 29, 267 |
| BstF5I | GGATG | 2 cut(s) | 574, 668 |
| BstFNI | CGCG | 1 cut(s) | 608 |
| BstHHI | GCGC | 3 cut(s) | 18, 608, 916 |
| BstKTI | GATC | 2 cut(s) | 1066, 1150 |
| BstMAI | GTCTC | 2 cut(s) | 229, 1240 |
| BstMBI | GATC | 2 cut(s) | 1063, 1147 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 66, 521, 822 |
| BstNI | CCWGG | 1 cut(s) | 905 |
| BstSCI | CCNGG | 1 cut(s) | 903 |
| BstSFI | CTRYAG | 4 cut(s) | 61, 685, 1105, 1210 |
| BstUI | CGCG | 1 cut(s) | 608 |
| BstV1I | GCAGC | 3 cut(s) | 69, 533, 613 |
| BstV2I | GAAGAC | 1 cut(s) | 443 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 952, 1290 |
| BsuRI | GGCC | 5 cut(s) | 371, 431, 825, 863, 1294 |
| BtsCI | GGATG | 2 cut(s) | 574, 668 |
| BtsI | GCAGTG | 1 cut(s) | 621 |
| BtsIMutI | CAGTG | 4 cut(s) | 30, 621, 719, 826 |
| Cac8I | GCNNGC | 2 cut(s) | 668, 942 |
| CfoI | GCGC | 3 cut(s) | 18, 608, 916 |
| Cfr13I | GGNCC | 1 cut(s) | 430 |
| DdeI | CTNAG | 2 cut(s) | 29, 267 |
| DpnI | GATC | 2 cut(s) | 1065, 1149 |
| DpnII | GATC | 2 cut(s) | 1063, 1147 |
| DraI | TTTAAA | 1 cut(s) | 162 |
| EaeI | YGGCCR | 3 cut(s) | 369, 861, 1292 |
| Eam1104I | CTCTTC | 2 cut(s) | 67, 749 |
| EarI | CTCTTC | 2 cut(s) | 67, 749 |
| Eco57I | CTGAAG | 2 cut(s) | 215, 230 |
| EcoRI | GAATTC | 2 cut(s) | 322, 345 |
| EcoRII | CCWGG | 1 cut(s) | 903 |
| Esp3I | CGTCTC | 1 cut(s) | 229 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 728, 760 |
| FbaI | TGATCA | 1 cut(s) | 1147 |
| Fnu4HI | GCNGC | 3 cut(s) | 58, 522, 627 |
| FokI | GGATG | 2 cut(s) | 581, 675 |
| Fsp4HI | GCNGC | 3 cut(s) | 58, 522, 627 |
| FspBI | CTAG | 2 cut(s) | 183, 821 |
| FspI | TGCGCA | 1 cut(s) | 17 |
| GlaI | GCGC | 3 cut(s) | 17, 607, 915 |
| GluI | GCNGC | 3 cut(s) | 58, 522, 627 |
| GsaI | CCCAGC | 1 cut(s) | 1245 |
| GsuI | CTGGAG | 1 cut(s) | 168 |
| HaeIII | GGCC | 5 cut(s) | 371, 431, 825, 863, 1294 |
| HapII | CCGG | 1 cut(s) | 566 |
| HhaI | GCGC | 3 cut(s) | 18, 608, 916 |
| Hin1I | GRCGYC | 1 cut(s) | 238 |
| Hin6I | GCGC | 3 cut(s) | 16, 606, 914 |
| HinP1I | GCGC | 3 cut(s) | 16, 606, 914 |
| HincII | GTYRAC | 3 cut(s) | 199, 727, 1120 |
| HindII | GTYRAC | 3 cut(s) | 199, 727, 1120 |
| HindIII | AAGCTT | 1 cut(s) | 1285 |
| HinfI | GANTC | 3 cut(s) | 47, 802, 967 |
| HpaI | GTTAAC | 1 cut(s) | 1120 |
| HpaII | CCGG | 1 cut(s) | 566 |
| HphI | GGTGA | 3 cut(s) | 16, 457, 883 |
| Hpy166II | GTNNAC | 3 cut(s) | 199, 727, 1120 |
| Hpy188I | TCNGA | 6 cut(s) | 234, 503, 751, 960, 1276, 1312 |
| Hpy188III | TCNNGA | 3 cut(s) | 147, 342, 1196 |
| Hpy8I | GTNNAC | 3 cut(s) | 199, 727, 1120 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 3 cut(s) | 481, 904, 925 |
| HpyCH4III | ACNGT | 5 cut(s) | 65, 310, 392, 1019, 1025 |
| HpyCH4IV | ACGT | 2 cut(s) | 238, 780 |
| HpyCH4V | TGCA | 5 cut(s) | 57, 521, 711, 816, 1302 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 66, 521, 822 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 267 |
| HpySE526I | ACGT | 2 cut(s) | 238, 780 |
| Hsp92I | GRCGYC | 1 cut(s) | 238 |
| HspAI | GCGC | 3 cut(s) | 16, 606, 914 |
| Ksp22I | TGATCA | 1 cut(s) | 1147 |
| KspAI | GTTAAC | 1 cut(s) | 1120 |
| Kzo9I | GATC | 2 cut(s) | 1063, 1147 |
| LmnI | GCTCC | 1 cut(s) | 283 |
| Lsp1109I | GCAGC | 3 cut(s) | 69, 533, 613 |
| LweI | GCATC | 4 cut(s) | 3, 193, 653, 901 |
| MaeI | CTAG | 2 cut(s) | 183, 821 |
| MaeII | ACGT | 2 cut(s) | 238, 780 |
| MaeIII | GTNAC | 5 cut(s) | 463, 636, 679, 934, 1019 |
| MalI | GATC | 2 cut(s) | 1065, 1149 |
| MboI | GATC | 2 cut(s) | 1063, 1147 |
| MboII | GAAGA | 6 cut(s) | 19, 80, 84, 430, 443, 736 |
| MlsI | TGGCCA | 3 cut(s) | 371, 863, 1294 |
| MluCI | AATT | 6 cut(s) | 322, 345, 443, 978, 1003, 1188 |
| MluNI | TGGCCA | 3 cut(s) | 371, 863, 1294 |
| MmeI | TCCRAC | 1 cut(s) | 329 |
| Mox20I | TGGCCA | 3 cut(s) | 371, 863, 1294 |
| MroXI | GAANNNNTTC | 3 cut(s) | 215, 228, 743 |
| MscI | TGGCCA | 3 cut(s) | 371, 863, 1294 |
| MseI | TTAA | 2 cut(s) | 161, 1119 |
| Msp20I | TGGCCA | 3 cut(s) | 371, 863, 1294 |
| MspI | CCGG | 1 cut(s) | 566 |
| MspR9I | CCNGG | 1 cut(s) | 905 |
| MvaI | CCWGG | 1 cut(s) | 905 |
| MvnI | CGCG | 1 cut(s) | 608 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 66, 521, 822 |
| NdeII | GATC | 2 cut(s) | 1063, 1147 |
| NlaIV | GGNNCC | 2 cut(s) | 172, 279 |
| NmuCI | GTSAC | 2 cut(s) | 463, 679 |
| NsbI | TGCGCA | 1 cut(s) | 17 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 400 |
| PdmI | GAANNNNTTC | 3 cut(s) | 215, 228, 743 |
| PfeI | GAWTC | 3 cut(s) | 47, 802, 967 |
| PkrI | GCNGC | 3 cut(s) | 59, 523, 628 |
| PsiI | TTATAA | 1 cut(s) | 1318 |
| Psp1406I | AACGTT | 1 cut(s) | 780 |
| Psp6I | CCWGG | 1 cut(s) | 903 |
| PspFI | CCCAGC | 1 cut(s) | 1241 |
| PspGI | CCWGG | 1 cut(s) | 903 |
| PspN4I | GGNNCC | 2 cut(s) | 172, 279 |
| PspPI | GGNCC | 1 cut(s) | 430 |
| SaqAI | TTAA | 2 cut(s) | 161, 1119 |
| SatI | GCNGC | 3 cut(s) | 58, 522, 627 |
| Sau3AI | GATC | 2 cut(s) | 1063, 1147 |
| Sau96I | GGNCC | 1 cut(s) | 430 |
| ScrFI | CCNGG | 1 cut(s) | 905 |
| SfaNI | GCATC | 4 cut(s) | 3, 193, 653, 901 |
| SfcI | CTRYAG | 4 cut(s) | 61, 685, 1105, 1210 |
| SmlI | CTYRAG | 1 cut(s) | 293 |
| SmoI | CTYRAG | 1 cut(s) | 293 |
| Sse9I | AATT | 6 cut(s) | 322, 345, 443, 978, 1003, 1188 |
| SspMI | CTAG | 2 cut(s) | 183, 821 |
| StyD4I | CCNGG | 1 cut(s) | 903 |
| TaaI | ACNGT | 5 cut(s) | 65, 310, 392, 1019, 1025 |
| TaiI | ACGT | 2 cut(s) | 241, 783 |
| TaqI | TCGA | 2 cut(s) | 219, 508 |
| TasI | AATT | 6 cut(s) | 322, 345, 443, 978, 1003, 1188 |
| TfiI | GAWTC | 3 cut(s) | 47, 802, 967 |
| Tru1I | TTAA | 2 cut(s) | 161, 1119 |
| Tru9I | TTAA | 2 cut(s) | 161, 1119 |
| TscAI | CASTG | 4 cut(s) | 30, 628, 726, 833 |
| TseFI | GTSAC | 2 cut(s) | 463, 679 |
| TseI | GCWGC | 3 cut(s) | 57, 521, 626 |
| Tsp45I | GTSAC | 2 cut(s) | 463, 679 |
| TspDTI | ATGAA | 3 cut(s) | 107, 870, 1088 |
| TspGWI | ACGGA | 2 cut(s) | 248, 1137 |
| TspRI | CASTG | 4 cut(s) | 30, 628, 726, 833 |
| XapI | RAATTY | 2 cut(s) | 322, 345 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 164 |
| XmnI | GAANNNNTTC | 3 cut(s) | 215, 228, 743 |
| XspI | CTAG | 2 cut(s) | 183, 821 |
| ZraI | GACGTC | 1 cut(s) | 239 |