pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 131 - 162 | 6e-12 | PPR repeat |
| PPR_3 | PF13812 | 132 - 179 | 1.3e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 133 - 162 | 4.4e-07 | PPR repeat family |
| PPR_1 | PF12854 | 167 - 197 | 7.2e-12 | PPR repeat |
| PPR_2 | PF13041 | 169 - 201 | 5.1e-09 | PPR repeat family |
| PPR | PF01535 | 172 - 201 | 3.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 199 - 234 | 1.8e-10 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 522 |
| AarI | CACCTGC | 1 cut(s) | 25 |
| Acc36I | ACCTGC | 1 cut(s) | 25 |
| AcsI | RAATTY | 1 cut(s) | 267 |
| AcyI | GRCGYC | 1 cut(s) | 61 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 547 |
| AgsI | TTSAA | 7 cut(s) | 56, 118, 224, 266, 415, 467, 631 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 110, 142 |
| AluBI | AGCT | 2 cut(s) | 461, 617 |
| AluI | AGCT | 2 cut(s) | 461, 617 |
| Alw21I | GWGCWC | 2 cut(s) | 463, 669 |
| Alw26I | GTCTC | 1 cut(s) | 16 |
| Alw44I | GTGCAC | 1 cut(s) | 665 |
| AoxI | GGCC | 2 cut(s) | 100, 601 |
| ApaLI | GTGCAC | 1 cut(s) | 665 |
| ApoI | RAATTY | 1 cut(s) | 267 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 271, 303 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 51, 578 |
| AspS9I | GGNCC | 1 cut(s) | 100 |
| AsuHPI | GGTGA | 2 cut(s) | 281, 400 |
| AsuII | TTCGAA | 1 cut(s) | 277 |
| BaeGI | GKGCMC | 1 cut(s) | 669 |
| BanII | GRGCYC | 1 cut(s) | 463 |
| BauI | CACGAG | 1 cut(s) | 107 |
| Bbv12I | GWGCWC | 2 cut(s) | 463, 669 |
| BccI | CCATC | 5 cut(s) | 148, 180, 475, 536, 704 |
| BcoDI | GTCTC | 1 cut(s) | 16 |
| BfuAI | ACCTGC | 1 cut(s) | 25 |
| BglII | AGATCT | 1 cut(s) | 651 |
| BmgT120I | GGNCC | 1 cut(s) | 100 |
| BmsI | GCATC | 3 cut(s) | 16, 541, 556 |
| BpmI | CTGGAG | 2 cut(s) | 398, 477 |
| Bpu10I | CCTNAGC | 1 cut(s) | 473 |
| Bpu14I | TTCGAA | 1 cut(s) | 277 |
| BsaHI | GRCGYC | 1 cut(s) | 61 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 371, 401 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 547 |
| Bse1I | ACTGG | 2 cut(s) | 381, 604 |
| Bse3DI | GCAATG | 1 cut(s) | 576 |
| BseGI | GGATG | 4 cut(s) | 31, 172, 556, 715 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 547 |
| BseMI | GCAATG | 1 cut(s) | 576 |
| BseMII | CTCAG | 1 cut(s) | 607 |
| BseNI | ACTGG | 2 cut(s) | 381, 604 |
| BseRI | GAGGAG | 1 cut(s) | 178 |
| BseSI | GKGCMC | 1 cut(s) | 669 |
| BshFI | GGCC | 2 cut(s) | 102, 603 |
| BsiHKAI | GWGCWC | 2 cut(s) | 463, 669 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 547 |
| BsmAI | GTCTC | 1 cut(s) | 16 |
| BsnI | GGCC | 2 cut(s) | 102, 603 |
| Bsp119I | TTCGAA | 1 cut(s) | 277 |
| Bsp1286I | GDGCHC | 2 cut(s) | 463, 669 |
| Bsp143I | GATC | 1 cut(s) | 651 |
| BspANI | GGCC | 2 cut(s) | 102, 603 |
| BspCNI | CTCAG | 1 cut(s) | 606 |
| BspMI | ACCTGC | 1 cut(s) | 25 |
| BspQI | GCTCTTC | 1 cut(s) | 468 |
| BspT104I | TTCGAA | 1 cut(s) | 277 |
| BsrDI | GCAATG | 1 cut(s) | 576 |
| BsrI | ACTGG | 2 cut(s) | 381, 604 |
| BssMI | GATC | 1 cut(s) | 651 |
| BssNI | GRCGYC | 1 cut(s) | 61 |
| BssSI | CACGAG | 1 cut(s) | 107 |
| Bst2BI | CACGAG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 3 cut(s) | 421, 500, 679 |
| Bst6I | CTCTTC | 3 cut(s) | 72, 468, 584 |
| BstACI | GRCGYC | 1 cut(s) | 61 |
| BstBI | TTCGAA | 1 cut(s) | 277 |
| BstDEI | CTNAG | 2 cut(s) | 473, 593 |
| BstEII | GGTNACC | 1 cut(s) | 406 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 545 |
| BstF5I | GGATG | 4 cut(s) | 31, 172, 556, 715 |
| BstKTI | GATC | 1 cut(s) | 654 |
| BstMAI | GTCTC | 1 cut(s) | 16 |
| BstMBI | GATC | 1 cut(s) | 651 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 58, 720 |
| BstPI | GGTNACC | 1 cut(s) | 406 |
| BstSLI | GKGCMC | 1 cut(s) | 669 |
| BstX2I | RGATCY | 1 cut(s) | 651 |
| BstYI | RGATCY | 1 cut(s) | 651 |
| BsuRI | GGCC | 2 cut(s) | 102, 603 |
| BtsCI | GGATG | 4 cut(s) | 31, 172, 556, 715 |
| BtsI | GCAGTG | 1 cut(s) | 721 |
| BtsIMutI | CAGTG | 2 cut(s) | 611, 721 |
| BveI | ACCTGC | 1 cut(s) | 25 |
| Cfr13I | GGNCC | 1 cut(s) | 100 |
| CseI | GACGC | 1 cut(s) | 50 |
| CviJI | RGCY | 9 cut(s) | 102, 316, 397, 432, 461, 505, 540, 603, 617 |
| CviKI_1 | RGCY | 9 cut(s) | 102, 316, 397, 432, 461, 505, 540, 603, 617 |
| DdeI | CTNAG | 2 cut(s) | 473, 593 |
| DpnI | GATC | 1 cut(s) | 653 |
| DpnII | GATC | 1 cut(s) | 651 |
| Eam1104I | CTCTTC | 3 cut(s) | 72, 468, 584 |
| EarI | CTCTTC | 3 cut(s) | 72, 468, 584 |
| Ecl136II | GAGCTC | 1 cut(s) | 461 |
| Eco24I | GRGCYC | 1 cut(s) | 463 |
| Eco53kI | GAGCTC | 1 cut(s) | 461 |
| Eco91I | GGTNACC | 1 cut(s) | 406 |
| EcoICRI | GAGCTC | 1 cut(s) | 461 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 545 |
| EcoO65I | GGTNACC | 1 cut(s) | 406 |
| EcoT38I | GRGCYC | 1 cut(s) | 463 |
| FaiI | YATR | 3 cut(s) | 147, 186, 522 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 14, 46 |
| FokI | GGATG | 4 cut(s) | 38, 159, 563, 722 |
| FriOI | GRGCYC | 1 cut(s) | 463 |
| GsuI | CTGGAG | 2 cut(s) | 398, 477 |
| HaeIII | GGCC | 2 cut(s) | 102, 603 |
| HgaI | GACGC | 1 cut(s) | 50 |
| Hin1I | GRCGYC | 1 cut(s) | 61 |
| HinfI | GANTC | 2 cut(s) | 168, 274 |
| HphI | GGTGA | 2 cut(s) | 281, 400 |
| Hpy166II | GTNNAC | 1 cut(s) | 667 |
| Hpy188I | TCNGA | 3 cut(s) | 360, 586, 596 |
| Hpy188III | TCNNGA | 4 cut(s) | 109, 176, 494, 659 |
| Hpy8I | GTNNAC | 1 cut(s) | 667 |
| HpyAV | CCTTC | 2 cut(s) | 81, 421 |
| HpyCH4III | ACNGT | 3 cut(s) | 421, 500, 679 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 554, 569, 667 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 58, 720 |
| HpyF3I | CTNAG | 2 cut(s) | 473, 593 |
| Hsp92I | GRCGYC | 1 cut(s) | 61 |
| Kzo9I | GATC | 1 cut(s) | 651 |
| LguI | GCTCTTC | 1 cut(s) | 468 |
| LmnI | GCTCC | 1 cut(s) | 458 |
| LpnPI | CCDG | 8 cut(s) | 20, 189, 313, 362, 507, 519, 617, 672 |
| LweI | GCATC | 3 cut(s) | 16, 541, 556 |
| MaeIII | GTNAC | 3 cut(s) | 109, 287, 406 |
| MalI | GATC | 1 cut(s) | 653 |
| MboI | GATC | 1 cut(s) | 651 |
| MboII | GAAGA | 6 cut(s) | 59, 254, 312, 455, 490, 571 |
| MfeI | CAATTG | 1 cut(s) | 467 |
| MflI | RGATCY | 1 cut(s) | 651 |
| MhlI | GDGCHC | 2 cut(s) | 463, 669 |
| MluCI | AATT | 5 cut(s) | 258, 267, 352, 467, 558 |
| MnlI | CCTC | 9 cut(s) | 75, 156, 306, 335, 365, 373, 587, 615, 697 |
| MroXI | GAANNNNTTC | 2 cut(s) | 51, 578 |
| MseI | TTAA | 2 cut(s) | 21, 204 |
| MslI | CAYNNNNRTG | 1 cut(s) | 92 |
| MunI | CAATTG | 1 cut(s) | 467 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 58, 720 |
| NdeII | GATC | 1 cut(s) | 651 |
| NmuCI | GTSAC | 3 cut(s) | 109, 287, 406 |
| NspV | TTCGAA | 1 cut(s) | 277 |
| PaqCI | CACCTGC | 1 cut(s) | 25 |
| PciSI | GCTCTTC | 1 cut(s) | 468 |
| PdmI | GAANNNNTTC | 2 cut(s) | 51, 578 |
| PfeI | GAWTC | 2 cut(s) | 168, 274 |
| PsiI | TTATAA | 1 cut(s) | 522 |
| Psp124BI | GAGCTC | 1 cut(s) | 463 |
| PspEI | GGTNACC | 1 cut(s) | 406 |
| PspPI | GGNCC | 1 cut(s) | 100 |
| PsuI | RGATCY | 1 cut(s) | 651 |
| RseI | CAYNNNNRTG | 1 cut(s) | 92 |
| SacI | GAGCTC | 1 cut(s) | 463 |
| SapI | GCTCTTC | 1 cut(s) | 468 |
| SaqAI | TTAA | 2 cut(s) | 21, 204 |
| Sau3AI | GATC | 1 cut(s) | 651 |
| Sau96I | GGNCC | 1 cut(s) | 100 |
| SduI | GDGCHC | 2 cut(s) | 463, 669 |
| SetI | ASST | 7 cut(s) | 39, 413, 463, 579, 619, 626, 674 |
| SfaNI | GCATC | 3 cut(s) | 16, 541, 556 |
| SfuI | TTCGAA | 1 cut(s) | 277 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 92 |
| Sse9I | AATT | 5 cut(s) | 258, 267, 352, 467, 558 |
| SstI | GAGCTC | 1 cut(s) | 463 |
| TaaI | ACNGT | 3 cut(s) | 421, 500, 679 |
| TaqI | TCGA | 2 cut(s) | 42, 277 |
| TasI | AATT | 5 cut(s) | 258, 267, 352, 467, 558 |
| TfiI | GAWTC | 2 cut(s) | 168, 274 |
| Tru1I | TTAA | 2 cut(s) | 21, 204 |
| Tru9I | TTAA | 2 cut(s) | 21, 204 |
| TscAI | CASTG | 2 cut(s) | 611, 721 |
| TseFI | GTSAC | 3 cut(s) | 109, 287, 406 |
| Tsp45I | GTSAC | 3 cut(s) | 109, 287, 406 |
| TspDTI | ATGAA | 3 cut(s) | 60, 587, 648 |
| TspGWI | ACGGA | 2 cut(s) | 64, 71 |
| TspRI | CASTG | 2 cut(s) | 611, 721 |
| VneI | GTGCAC | 1 cut(s) | 665 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 545 |
| XapI | RAATTY | 1 cut(s) | 267 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 234 |
| XmnI | GAANNNNTTC | 2 cut(s) | 51, 578 |