Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 126 - 173 | 2.2e-09 | PPR repeat family |
| PPR_3 | PF13812 | 150 - 209 | 6.8e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 158 - 189 | 2.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 161 - 210 | 3.2e-13 | PPR repeat family |
| PPR_1 | PF12854 | 195 - 226 | 4.3e-12 | PPR repeat |
| PPR_3 | PF13812 | 195 - 243 | 7.9e-09 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 197 - 246 | 1.7e-16 | PPR repeat family |
| PPR | PF01535 | 200 - 230 | 2.3e-06 | PPR repeat |
| PPR_long | PF17177 | 212 - 318 | 3.2e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 229 - 260 | 2e-10 | PPR repeat |
| PPR_2 | PF13041 | 233 - 281 | 1e-17 | PPR repeat family |
| PPR | PF01535 | 235 - 265 | 2.4e-07 | PPR repeat |
| PPR_3 | PF13812 | 256 - 314 | 4.1e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 263 - 296 | 6.3e-11 | PPR repeat |
| PPR_2 | PF13041 | 268 - 316 | 9.9e-17 | PPR repeat family |
| PPR | PF01535 | 270 - 300 | 6.3e-07 | PPR repeat |
| MRP-S27 | PF10037 | 271 - 333 | 5.2e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 298 - 330 | 2.2e-09 | PPR repeat |
| PPR_2 | PF13041 | 311 - 350 | 4.6e-09 | PPR repeat family |
| PPR_1 | PF12854 | 334 - 365 | 7.4e-12 | PPR repeat |
| PPR_2 | PF13041 | 337 - 373 | 9.7e-09 | PPR repeat family |
| PPR | PF01535 | 340 - 369 | 3.4e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 617 |
| AccII | CGCG | 1 cut(s) | 259 |
| AcsI | RAATTY | 2 cut(s) | 458, 552 |
| AcuI | CTGAAG | 1 cut(s) | 904 |
| AfaI | GTAC | 1 cut(s) | 85 |
| AluBI | AGCT | 3 cut(s) | 650, 694, 863 |
| AluI | AGCT | 3 cut(s) | 650, 694, 863 |
| Alw26I | GTCTC | 1 cut(s) | 180 |
| ApeKI | GCWGC | 8 cut(s) | 54, 57, 60, 63, 66, 128, 545, 650 |
| ApoI | RAATTY | 2 cut(s) | 458, 552 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 286, 318 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 236, 249, 767 |
| AsuHPI | GGTGA | 5 cut(s) | 89, 185, 550, 898, 907 |
| BanII | GRGCYC | 1 cut(s) | 1109 |
| BbsI | GAAGAC | 1 cut(s) | 467 |
| BbvI | GCAGC | 8 cut(s) | 66, 69, 72, 75, 78, 115, 532, 637 |
| BccI | CCATC | 4 cut(s) | 7, 667, 949, 1034 |
| BcoDI | GTCTC | 1 cut(s) | 180 |
| BfaI | CTAG | 1 cut(s) | 165 |
| BfmI | CTRYAG | 1 cut(s) | 330 |
| BisI | GCNGC | 8 cut(s) | 55, 58, 61, 64, 67, 129, 546, 651 |
| BlsI | GCNGC | 8 cut(s) | 56, 59, 62, 65, 68, 130, 547, 652 |
| BmiI | GGNNCC | 1 cut(s) | 1108 |
| BmsI | GCATC | 3 cut(s) | 214, 677, 745 |
| BpiI | GAAGAC | 1 cut(s) | 467 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 175, 207 |
| BpmI | CTGGAG | 2 cut(s) | 590, 783 |
| BpuEI | CTTGAG | 1 cut(s) | 319 |
| BsaAI | YACGTR | 1 cut(s) | 1023 |
| BsaI | GGTCTC | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 1 cut(s) | 1110 |
| Bse3DI | GCAATG | 1 cut(s) | 765 |
| BseDI | CCNNGG | 1 cut(s) | 1110 |
| BseGI | GGATG | 5 cut(s) | 229, 336, 692, 960, 1045 |
| BseMI | GCAATG | 1 cut(s) | 765 |
| BseMII | CTCAG | 2 cut(s) | 531, 786 |
| BseRI | GAGGAG | 2 cut(s) | 233, 1071 |
| BseXI | GCAGC | 8 cut(s) | 66, 69, 72, 75, 78, 115, 532, 637 |
| BsgI | GTGCAG | 1 cut(s) | 531 |
| Bsh1236I | CGCG | 1 cut(s) | 259 |
| BsmAI | GTCTC | 1 cut(s) | 180 |
| Bso31I | GGTCTC | 1 cut(s) | 180 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1109 |
| Bsp143I | GATC | 1 cut(s) | 1087 |
| Bsp19I | CCATGG | 1 cut(s) | 1110 |
| BspCNI | CTCAG | 2 cut(s) | 532, 785 |
| BspFNI | CGCG | 1 cut(s) | 259 |
| BspHI | TCATGA | 1 cut(s) | 877 |
| BspLI | GGNNCC | 1 cut(s) | 1108 |
| BspMAI | CTGCAG | 1 cut(s) | 334 |
| BspTNI | GGTCTC | 1 cut(s) | 180 |
| BsrDI | GCAATG | 1 cut(s) | 765 |
| BssECI | CCNNGG | 1 cut(s) | 1110 |
| BssMI | GATC | 1 cut(s) | 1087 |
| BssT1I | CCWWGG | 1 cut(s) | 1110 |
| Bst4CI | ACNGT | 5 cut(s) | 416, 703, 718, 728, 1049 |
| Bst6I | CTCTTC | 2 cut(s) | 73, 773 |
| BstBAI | YACGTR | 1 cut(s) | 1023 |
| BstC8I | GCNNGC | 2 cut(s) | 257, 692 |
| BstDEI | CTNAG | 3 cut(s) | 540, 665, 772 |
| BstDSI | CCRYGG | 1 cut(s) | 1110 |
| BstEII | GGTNACC | 1 cut(s) | 598 |
| BstF5I | GGATG | 5 cut(s) | 229, 336, 692, 960, 1045 |
| BstFNI | CGCG | 1 cut(s) | 259 |
| BstKTI | GATC | 1 cut(s) | 1090 |
| BstMAI | GTCTC | 1 cut(s) | 180 |
| BstMBI | GATC | 1 cut(s) | 1087 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 60, 63, 66, 72, 256, 265 |
| BstNSI | RCATGY | 1 cut(s) | 613 |
| BstPI | GGTNACC | 1 cut(s) | 598 |
| BstSFI | CTRYAG | 1 cut(s) | 330 |
| BstUI | CGCG | 1 cut(s) | 259 |
| BstV1I | GCAGC | 8 cut(s) | 66, 69, 72, 75, 78, 115, 532, 637 |
| BstV2I | GAAGAC | 1 cut(s) | 467 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 568, 976 |
| BtgI | CCRYGG | 1 cut(s) | 1110 |
| BtsCI | GGATG | 5 cut(s) | 229, 336, 692, 960, 1045 |
| BtsIMutI | CAGTG | 2 cut(s) | 857, 928 |
| Cac8I | GCNNGC | 2 cut(s) | 257, 692 |
| CciI | TCATGA | 1 cut(s) | 877 |
| CseI | GACGC | 1 cut(s) | 248 |
| Csp6I | GTAC | 1 cut(s) | 84 |
| CviAII | CATG | 6 cut(s) | 176, 242, 610, 631, 878, 1111 |
| CviQI | GTAC | 1 cut(s) | 84 |
| DdeI | CTNAG | 3 cut(s) | 540, 665, 772 |
| DpnI | GATC | 1 cut(s) | 1089 |
| DpnII | GATC | 1 cut(s) | 1087 |
| DraI | TTTAAA | 1 cut(s) | 349 |
| Eam1104I | CTCTTC | 2 cut(s) | 73, 773 |
| EarI | CTCTTC | 2 cut(s) | 73, 773 |
| Eco130I | CCWWGG | 1 cut(s) | 1110 |
| Eco24I | GRGCYC | 1 cut(s) | 1109 |
| Eco31I | GGTCTC | 1 cut(s) | 180 |
| Eco57I | CTGAAG | 1 cut(s) | 904 |
| Eco91I | GGTNACC | 1 cut(s) | 598 |
| EcoO65I | GGTNACC | 1 cut(s) | 598 |
| EcoT14I | CCWWGG | 1 cut(s) | 1110 |
| EcoT38I | GRGCYC | 1 cut(s) | 1109 |
| ErhI | CCWWGG | 1 cut(s) | 1110 |
| FaeI | CATG | 6 cut(s) | 179, 245, 613, 634, 881, 1114 |
| FatI | CATG | 6 cut(s) | 175, 241, 609, 630, 877, 1110 |
| Fnu4HI | GCNGC | 8 cut(s) | 55, 58, 61, 64, 67, 129, 546, 651 |
| FokI | GGATG | 5 cut(s) | 236, 323, 699, 967, 1052 |
| FriOI | GRGCYC | 1 cut(s) | 1109 |
| Fsp4HI | GCNGC | 8 cut(s) | 55, 58, 61, 64, 67, 129, 546, 651 |
| FspBI | CTAG | 1 cut(s) | 165 |
| GluI | GCNGC | 8 cut(s) | 55, 58, 61, 64, 67, 129, 546, 651 |
| GsuI | CTGGAG | 2 cut(s) | 590, 783 |
| HgaI | GACGC | 1 cut(s) | 248 |
| Hin1II | CATG | 6 cut(s) | 179, 245, 613, 634, 881, 1114 |
| HincII | GTYRAC | 1 cut(s) | 305 |
| HindII | GTYRAC | 1 cut(s) | 305 |
| HinfI | GANTC | 4 cut(s) | 301, 424, 826, 991 |
| HphI | GGTGA | 5 cut(s) | 89, 185, 550, 898, 907 |
| Hpy166II | GTNNAC | 1 cut(s) | 305 |
| Hpy188I | TCNGA | 3 cut(s) | 434, 775, 1126 |
| Hpy188III | TCNNGA | 5 cut(s) | 165, 298, 800, 878, 905 |
| Hpy8I | GTNNAC | 1 cut(s) | 305 |
| HpyAV | CCTTC | 7 cut(s) | 42, 226, 279, 505, 613, 928, 944 |
| HpyCH4III | ACNGT | 5 cut(s) | 416, 703, 718, 728, 1049 |
| HpyCH4IV | ACGT | 3 cut(s) | 23, 804, 1022 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 60, 63, 66, 72, 256, 265 |
| HpyF3I | CTNAG | 3 cut(s) | 540, 665, 772 |
| HpySE526I | ACGT | 3 cut(s) | 23, 804, 1022 |
| Hsp92II | CATG | 6 cut(s) | 179, 245, 613, 634, 881, 1114 |
| Kzo9I | GATC | 1 cut(s) | 1087 |
| LmnI | GCTCC | 2 cut(s) | 802, 1112 |
| LpnPI | CCDG | 6 cut(s) | 120, 554, 561, 704, 813, 918 |
| Lsp1109I | GCAGC | 8 cut(s) | 66, 69, 72, 75, 78, 115, 532, 637 |
| LweI | GCATC | 3 cut(s) | 214, 677, 745 |
| MaeI | CTAG | 1 cut(s) | 165 |
| MaeII | ACGT | 3 cut(s) | 23, 804, 1022 |
| MaeIII | GTNAC | 4 cut(s) | 535, 598, 913, 1043 |
| MalI | GATC | 1 cut(s) | 1089 |
| MboI | GATC | 1 cut(s) | 1087 |
| MboII | GAAGA | 9 cut(s) | 27, 86, 90, 264, 454, 467, 682, 689, 760 |
| MfeI | CAATTG | 1 cut(s) | 406 |
| MhlI | GDGCHC | 1 cut(s) | 1109 |
| MluCI | AATT | 9 cut(s) | 40, 314, 406, 458, 467, 552, 654, 659, 1027 |
| MlyI | GAGTC | 1 cut(s) | 310 |
| MroXI | GAANNNNTTC | 3 cut(s) | 236, 249, 767 |
| MseI | TTAA | 2 cut(s) | 348, 696 |
| MslI | CAYNNNNRTG | 2 cut(s) | 341, 563 |
| MssI | GTTTAAAC | 1 cut(s) | 349 |
| MunI | CAATTG | 1 cut(s) | 406 |
| MvnI | CGCG | 1 cut(s) | 259 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 60, 63, 66, 72, 256, 265 |
| NcoI | CCATGG | 1 cut(s) | 1110 |
| NdeII | GATC | 1 cut(s) | 1087 |
| NlaIII | CATG | 6 cut(s) | 179, 245, 613, 634, 881, 1114 |
| NlaIV | GGNNCC | 1 cut(s) | 1108 |
| NmuCI | GTSAC | 2 cut(s) | 535, 913 |
| NspI | RCATGY | 1 cut(s) | 613 |
| PagI | TCATGA | 1 cut(s) | 877 |
| PdmI | GAANNNNTTC | 3 cut(s) | 236, 249, 767 |
| PfeI | GAWTC | 3 cut(s) | 424, 826, 991 |
| PkrI | GCNGC | 8 cut(s) | 56, 59, 62, 65, 68, 130, 547, 652 |
| PleI | GAGTC | 1 cut(s) | 309 |
| PmeI | GTTTAAAC | 1 cut(s) | 349 |
| PpsI | GAGTC | 1 cut(s) | 309 |
| Ppu21I | YACGTR | 1 cut(s) | 1023 |
| PsiI | TTATAA | 1 cut(s) | 617 |
| PspEI | GGTNACC | 1 cut(s) | 598 |
| PspN4I | GGNNCC | 1 cut(s) | 1108 |
| PstI | CTGCAG | 1 cut(s) | 334 |
| RsaI | GTAC | 1 cut(s) | 85 |
| RsaNI | GTAC | 1 cut(s) | 84 |
| RseI | CAYNNNNRTG | 2 cut(s) | 341, 563 |
| SaqAI | TTAA | 2 cut(s) | 348, 696 |
| SatI | GCNGC | 8 cut(s) | 55, 58, 61, 64, 67, 129, 546, 651 |
| Sau3AI | GATC | 1 cut(s) | 1087 |
| SchI | GAGTC | 1 cut(s) | 310 |
| SduI | GDGCHC | 1 cut(s) | 1109 |
| SfaNI | GCATC | 3 cut(s) | 214, 677, 745 |
| SfcI | CTRYAG | 1 cut(s) | 330 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 341, 563 |
| SmlI | CTYRAG | 1 cut(s) | 298 |
| SmoI | CTYRAG | 1 cut(s) | 298 |
| Sse9I | AATT | 9 cut(s) | 40, 314, 406, 458, 467, 552, 654, 659, 1027 |
| SspMI | CTAG | 1 cut(s) | 165 |
| StyI | CCWWGG | 1 cut(s) | 1110 |
| TaaI | ACNGT | 5 cut(s) | 416, 703, 718, 728, 1049 |
| TaiI | ACGT | 3 cut(s) | 26, 807, 1025 |
| TaqI | TCGA | 1 cut(s) | 723 |
| TasI | AATT | 9 cut(s) | 40, 314, 406, 458, 467, 552, 654, 659, 1027 |
| TfiI | GAWTC | 3 cut(s) | 424, 826, 991 |
| Tru1I | TTAA | 2 cut(s) | 348, 696 |
| Tru9I | TTAA | 2 cut(s) | 348, 696 |
| TscAI | CASTG | 2 cut(s) | 857, 928 |
| TseFI | GTSAC | 2 cut(s) | 535, 913 |
| TseI | GCWGC | 8 cut(s) | 54, 57, 60, 63, 66, 128, 545, 650 |
| Tsp45I | GTSAC | 2 cut(s) | 535, 913 |
| TspDTI | ATGAA | 5 cut(s) | 128, 258, 776, 866, 894 |
| TspRI | CASTG | 2 cut(s) | 857, 928 |
| XapI | RAATTY | 2 cut(s) | 458, 552 |
| XbaI | TCTAGA | 1 cut(s) | 164 |
| XceI | RCATGY | 1 cut(s) | 613 |
| XmnI | GAANNNNTTC | 3 cut(s) | 236, 249, 767 |
| XspI | CTAG | 1 cut(s) | 165 |