Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 39 - 72 | 5.2e-11 | PPR repeat |
| PPR_2 | PF13041 | 43 - 83 | 3e-08 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 7.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 91 - 124 | 2.5e-10 | PPR repeat |
| PPR_2 | PF13041 | 102 - 145 | 9.2e-13 | PPR repeat family |
| PPR_3 | PF13812 | 120 - 179 | 2.6e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 127 - 159 | 5e-10 | PPR repeat |
| PPR_2 | PF13041 | 131 - 180 | 1.7e-17 | PPR repeat family |
| PPR_1 | PF12854 | 162 - 188 | 1e-08 | PPR repeat |
| PPR_1 | PF12854 | 190 - 221 | 3.2e-09 | PPR repeat |
| PPR_2 | PF13041 | 194 - 242 | 5.8e-17 | PPR repeat family |
| PPR | PF01535 | 197 - 224 | 3.1e-07 | PPR repeat |
| PPR_long | PF17177 | 207 - 309 | 3e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 216 - 273 | 2.3e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 225 - 256 | 7.7e-16 | PPR repeat |
| PPR_2 | PF13041 | 228 - 277 | 6.3e-17 | PPR repeat family |
| TPR_24 | PF23276 | 230 - 310 | 9.6e-06 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 231 - 260 | 4e-10 | PPR repeat |
| PPR_1 | PF12854 | 260 - 292 | 6e-07 | PPR repeat |
| PPR_2 | PF13041 | 263 - 307 | 6.1e-08 | PPR repeat family |
| PPR_2 | PF13041 | 311 - 339 | 2e-06 | PPR repeat family |
| PPR_1 | PF12854 | 322 - 355 | 4e-06 | PPR repeat |
| PPR_2 | PF13041 | 329 - 368 | 5.4e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 212 |
| AccIII | TCCGGA | 2 cut(s) | 204, 391 |
| AciI | CCGC | 2 cut(s) | 728, 1151 |
| AclWI | GGATC | 1 cut(s) | 1130 |
| AcoI | YGGCCR | 1 cut(s) | 778 |
| AcsI | RAATTY | 2 cut(s) | 857, 1046 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 211 |
| AhlI | ACTAGT | 1 cut(s) | 676 |
| AjnI | CCWGG | 1 cut(s) | 96 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1092, 1124 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 955, 987 |
| AluBI | AGCT | 4 cut(s) | 87, 455, 591, 784 |
| AluI | AGCT | 4 cut(s) | 87, 455, 591, 784 |
| Alw26I | GTCTC | 1 cut(s) | 727 |
| AlwI | GGATC | 1 cut(s) | 1130 |
| Aor13HI | TCCGGA | 2 cut(s) | 204, 391 |
| AoxI | GGCC | 4 cut(s) | 439, 778, 820, 1038 |
| ApeKI | GCWGC | 2 cut(s) | 191, 1147 |
| ApoI | RAATTY | 2 cut(s) | 857, 1046 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 678 |
| AspLEI | GCGC | 1 cut(s) | 196 |
| AspS9I | GGNCC | 1 cut(s) | 1038 |
| AsuHPI | GGTGA | 1 cut(s) | 499 |
| BalI | TGGCCA | 1 cut(s) | 780 |
| BbsI | GAAGAC | 2 cut(s) | 113, 496 |
| BbvI | GCAGC | 2 cut(s) | 178, 1134 |
| BccI | CCATC | 9 cut(s) | 70, 256, 314, 541, 707, 812, 865, 974, 1147 |
| BceAI | ACGGC | 2 cut(s) | 48, 175 |
| BciT130I | CCWGG | 1 cut(s) | 98 |
| BciVI | GTATCC | 1 cut(s) | 325 |
| BclI | TGATCA | 1 cut(s) | 153 |
| BcoDI | GTCTC | 1 cut(s) | 727 |
| BcuI | ACTAGT | 1 cut(s) | 676 |
| BfaI | CTAG | 4 cut(s) | 197, 624, 677, 770 |
| BfmI | CTRYAG | 4 cut(s) | 298, 592, 846, 1080 |
| BfuAI | ACCTGC | 1 cut(s) | 212 |
| BfuI | GTATCC | 1 cut(s) | 325 |
| BisI | GCNGC | 3 cut(s) | 192, 1148, 1151 |
| BlsI | GCNGC | 3 cut(s) | 193, 1149, 1152 |
| Bme1390I | CCNGG | 1 cut(s) | 98 |
| BmgT120I | GGNCC | 1 cut(s) | 1038 |
| BmiI | GGNNCC | 1 cut(s) | 571 |
| BmrFI | CCNGG | 1 cut(s) | 98 |
| BmsI | GCATC | 4 cut(s) | 266, 673, 756, 1075 |
| BpiI | GAAGAC | 2 cut(s) | 113, 496 |
| BpmI | CTGGAG | 1 cut(s) | 960 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 573 |
| BsaWI | WCCGGW | 2 cut(s) | 204, 391 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 211 |
| Bse1I | ACTGG | 1 cut(s) | 449 |
| BseAI | TCCGGA | 2 cut(s) | 204, 391 |
| BseBI | CCWGG | 1 cut(s) | 98 |
| BseDI | CCNNGG | 2 cut(s) | 97, 573 |
| BseGI | GGATG | 5 cut(s) | 190, 244, 281, 400, 552 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BseMII | CTCAG | 3 cut(s) | 378, 753, 938 |
| BseNI | ACTGG | 1 cut(s) | 449 |
| BseXI | GCAGC | 2 cut(s) | 178, 1134 |
| BshFI | GGCC | 4 cut(s) | 441, 780, 822, 1040 |
| BsiSI | CCGG | 3 cut(s) | 205, 236, 392 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 211 |
| BsmAI | GTCTC | 1 cut(s) | 727 |
| BsnI | GGCC | 4 cut(s) | 441, 780, 822, 1040 |
| Bsp13I | TCCGGA | 2 cut(s) | 204, 391 |
| Bsp143I | GATC | 2 cut(s) | 153, 1135 |
| Bsp19I | CCATGG | 1 cut(s) | 573 |
| BspACI | CCGC | 2 cut(s) | 728, 1151 |
| BspANI | GGCC | 4 cut(s) | 441, 780, 822, 1040 |
| BspCNI | CTCAG | 3 cut(s) | 377, 754, 939 |
| BspEI | TCCGGA | 2 cut(s) | 204, 391 |
| BspHI | TCATGA | 1 cut(s) | 1166 |
| BspLI | GGNNCC | 1 cut(s) | 571 |
| BspMAI | CTGCAG | 1 cut(s) | 1084 |
| BspMI | ACCTGC | 1 cut(s) | 212 |
| BspPI | GGATC | 1 cut(s) | 1130 |
| BsrI | ACTGG | 1 cut(s) | 449 |
| BssECI | CCNNGG | 2 cut(s) | 97, 573 |
| BssMI | GATC | 2 cut(s) | 153, 1135 |
| BssT1I | CCWWGG | 1 cut(s) | 573 |
| Bst2UI | CCWGG | 1 cut(s) | 98 |
| Bst4CI | ACNGT | 2 cut(s) | 320, 1025 |
| Bst6I | CTCTTC | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 2 cut(s) | 281, 782 |
| BstDEI | CTNAG | 5 cut(s) | 364, 762, 863, 947, 1122 |
| BstDSI | CCRYGG | 1 cut(s) | 573 |
| BstF5I | GGATG | 5 cut(s) | 190, 244, 281, 400, 552 |
| BstHHI | GCGC | 1 cut(s) | 196 |
| BstKTI | GATC | 2 cut(s) | 156, 1138 |
| BstMAI | GTCTC | 1 cut(s) | 727 |
| BstMBI | GATC | 2 cut(s) | 153, 1135 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 438 |
| BstNI | CCWGG | 1 cut(s) | 98 |
| BstSCI | CCNGG | 1 cut(s) | 96 |
| BstSFI | CTRYAG | 4 cut(s) | 298, 592, 846, 1080 |
| BstV1I | GCAGC | 2 cut(s) | 178, 1134 |
| BstV2I | GAAGAC | 2 cut(s) | 113, 496 |
| BstX2I | RGATCY | 1 cut(s) | 1135 |
| BstYI | RGATCY | 1 cut(s) | 1135 |
| BsuI | GTATCC | 1 cut(s) | 325 |
| BsuRI | GGCC | 4 cut(s) | 441, 780, 822, 1040 |
| BtgI | CCRYGG | 1 cut(s) | 573 |
| BtsCI | GGATG | 5 cut(s) | 190, 244, 281, 400, 552 |
| BtsIMutI | CAGTG | 1 cut(s) | 442 |
| BveI | ACCTGC | 1 cut(s) | 212 |
| Cac8I | GCNNGC | 2 cut(s) | 281, 782 |
| CciI | TCATGA | 1 cut(s) | 1166 |
| CfoI | GCGC | 1 cut(s) | 196 |
| Cfr13I | GGNCC | 1 cut(s) | 1038 |
| CviAII | CATG | 4 cut(s) | 574, 1035, 1042, 1167 |
| DdeI | CTNAG | 5 cut(s) | 364, 762, 863, 947, 1122 |
| DpnI | GATC | 2 cut(s) | 155, 1137 |
| DpnII | GATC | 2 cut(s) | 153, 1135 |
| DraI | TTTAAA | 1 cut(s) | 1159 |
| EaeI | YGGCCR | 1 cut(s) | 778 |
| Eam1104I | CTCTTC | 1 cut(s) | 365 |
| EarI | CTCTTC | 1 cut(s) | 365 |
| Eco130I | CCWWGG | 1 cut(s) | 573 |
| EcoRI | GAATTC | 1 cut(s) | 857 |
| EcoRII | CCWGG | 1 cut(s) | 96 |
| EcoT14I | CCWWGG | 1 cut(s) | 573 |
| EcoT22I | ATGCAT | 1 cut(s) | 666 |
| ErhI | CCWWGG | 1 cut(s) | 573 |
| FaeI | CATG | 4 cut(s) | 577, 1038, 1045, 1170 |
| FatI | CATG | 4 cut(s) | 573, 1034, 1041, 1166 |
| FauI | CCCGC | 1 cut(s) | 721 |
| FbaI | TGATCA | 1 cut(s) | 153 |
| Fnu4HI | GCNGC | 3 cut(s) | 192, 1148, 1151 |
| FokI | GGATG | 5 cut(s) | 197, 251, 288, 407, 559 |
| Fsp4HI | GCNGC | 3 cut(s) | 192, 1148, 1151 |
| FspBI | CTAG | 4 cut(s) | 197, 624, 677, 770 |
| GlaI | GCGC | 1 cut(s) | 195 |
| GluI | GCNGC | 3 cut(s) | 192, 1148, 1151 |
| GsuI | CTGGAG | 1 cut(s) | 960 |
| HaeIII | GGCC | 4 cut(s) | 441, 780, 822, 1040 |
| HapII | CCGG | 3 cut(s) | 205, 236, 392 |
| HhaI | GCGC | 1 cut(s) | 196 |
| Hin1II | CATG | 4 cut(s) | 577, 1038, 1045, 1170 |
| Hin6I | GCGC | 1 cut(s) | 194 |
| HinP1I | GCGC | 1 cut(s) | 194 |
| HinfI | GANTC | 2 cut(s) | 70, 418 |
| HpaII | CCGG | 3 cut(s) | 205, 236, 392 |
| HphI | GGTGA | 1 cut(s) | 499 |
| Hpy166II | GTNNAC | 1 cut(s) | 907 |
| Hpy188I | TCNGA | 5 cut(s) | 75, 153, 367, 588, 763 |
| Hpy188III | TCNNGA | 7 cut(s) | 205, 392, 683, 788, 977, 1055, 1167 |
| Hpy8I | GTNNAC | 1 cut(s) | 907 |
| HpyAV | CCTTC | 3 cut(s) | 151, 520, 536 |
| HpyCH4III | ACNGT | 2 cut(s) | 320, 1025 |
| HpyCH4V | TGCA | 7 cut(s) | 327, 432, 618, 664, 723, 987, 1082 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 438 |
| HpyF3I | CTNAG | 5 cut(s) | 364, 762, 863, 947, 1122 |
| Hsp92II | CATG | 4 cut(s) | 577, 1038, 1045, 1170 |
| HspAI | GCGC | 1 cut(s) | 194 |
| Kpn2I | TCCGGA | 2 cut(s) | 204, 391 |
| Ksp22I | TGATCA | 1 cut(s) | 153 |
| Kzo9I | GATC | 2 cut(s) | 153, 1135 |
| LmnI | GCTCC | 2 cut(s) | 394, 575 |
| Lsp1109I | GCAGC | 2 cut(s) | 178, 1134 |
| LweI | GCATC | 4 cut(s) | 266, 673, 756, 1075 |
| MaeI | CTAG | 4 cut(s) | 197, 624, 677, 770 |
| MaeIII | GTNAC | 2 cut(s) | 400, 827 |
| MalI | GATC | 2 cut(s) | 155, 1137 |
| MboI | GATC | 2 cut(s) | 153, 1135 |
| MboII | GAAGA | 6 cut(s) | 100, 113, 271, 278, 352, 496 |
| MfeI | CAATTG | 1 cut(s) | 52 |
| MflI | RGATCY | 1 cut(s) | 1135 |
| MlsI | TGGCCA | 1 cut(s) | 780 |
| MluCI | AATT | 9 cut(s) | 15, 52, 252, 339, 690, 857, 927, 1046, 1100 |
| MluNI | TGGCCA | 1 cut(s) | 780 |
| MnlI | CCTC | 9 cut(s) | 181, 211, 266, 368, 374, 421, 453, 953, 1001 |
| Mox20I | TGGCCA | 1 cut(s) | 780 |
| Mph1103I | ATGCAT | 1 cut(s) | 666 |
| MroI | TCCGGA | 2 cut(s) | 204, 391 |
| MroXI | GAANNNNTTC | 1 cut(s) | 678 |
| MscI | TGGCCA | 1 cut(s) | 780 |
| MseI | TTAA | 2 cut(s) | 1016, 1158 |
| Msp20I | TGGCCA | 1 cut(s) | 780 |
| MspA1I | CMGCKG | 1 cut(s) | 1153 |
| MspI | CCGG | 3 cut(s) | 205, 236, 392 |
| MspR9I | CCNGG | 1 cut(s) | 98 |
| MunI | CAATTG | 1 cut(s) | 52 |
| MvaI | CCWGG | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 438 |
| NcoI | CCATGG | 1 cut(s) | 573 |
| NdeII | GATC | 2 cut(s) | 153, 1135 |
| NlaIII | CATG | 4 cut(s) | 577, 1038, 1045, 1170 |
| NlaIV | GGNNCC | 1 cut(s) | 571 |
| NsiI | ATGCAT | 1 cut(s) | 666 |
| PagI | TCATGA | 1 cut(s) | 1166 |
| PdmI | GAANNNNTTC | 1 cut(s) | 678 |
| PfeI | GAWTC | 2 cut(s) | 70, 418 |
| PkrI | GCNGC | 3 cut(s) | 193, 1149, 1152 |
| Psp6I | CCWGG | 1 cut(s) | 96 |
| PspGI | CCWGG | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 1 cut(s) | 571 |
| PspPI | GGNCC | 1 cut(s) | 1038 |
| PstI | CTGCAG | 1 cut(s) | 1084 |
| PsuI | RGATCY | 1 cut(s) | 1135 |
| SaqAI | TTAA | 2 cut(s) | 1016, 1158 |
| SatI | GCNGC | 3 cut(s) | 192, 1148, 1151 |
| Sau3AI | GATC | 2 cut(s) | 153, 1135 |
| Sau96I | GGNCC | 1 cut(s) | 1038 |
| ScrFI | CCNGG | 1 cut(s) | 98 |
| SfaNI | GCATC | 4 cut(s) | 266, 673, 756, 1075 |
| SfcI | CTRYAG | 4 cut(s) | 298, 592, 846, 1080 |
| SpeI | ACTAGT | 1 cut(s) | 676 |
| Sse9I | AATT | 9 cut(s) | 15, 52, 252, 339, 690, 857, 927, 1046, 1100 |
| SsiI | CCGC | 2 cut(s) | 728, 1151 |
| SspMI | CTAG | 4 cut(s) | 197, 624, 677, 770 |
| StyD4I | CCNGG | 1 cut(s) | 96 |
| StyI | CCWWGG | 1 cut(s) | 573 |
| TaaI | ACNGT | 2 cut(s) | 320, 1025 |
| TaqI | TCGA | 1 cut(s) | 1006 |
| TasI | AATT | 9 cut(s) | 15, 52, 252, 339, 690, 857, 927, 1046, 1100 |
| TauI | GCSGC | 1 cut(s) | 1153 |
| TfiI | GAWTC | 2 cut(s) | 70, 418 |
| Tru1I | TTAA | 2 cut(s) | 1016, 1158 |
| Tru9I | TTAA | 2 cut(s) | 1016, 1158 |
| TscAI | CASTG | 1 cut(s) | 449 |
| TseI | GCWGC | 2 cut(s) | 191, 1147 |
| TspDTI | ATGAA | 5 cut(s) | 255, 360, 486, 1058, 1155 |
| TspRI | CASTG | 1 cut(s) | 449 |
| XapI | RAATTY | 2 cut(s) | 857, 1046 |
| XmnI | GAANNNNTTC | 1 cut(s) | 678 |
| XspI | CTAG | 4 cut(s) | 197, 624, 677, 770 |
| Zsp2I | ATGCAT | 1 cut(s) | 666 |