Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 37 | 1e-12 | PPR repeat |
| PPR_2 | PF13041 | 8 - 43 | 1.2e-07 | PPR repeat family |
| PPR | PF01535 | 11 - 40 | 1.7e-06 | PPR repeat |
| PPR_1 | PF12854 | 44 - 68 | 8.2e-07 | PPR repeat |
| PPR_long | PF17177 | 49 - 184 | 2e-07 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 52 - 171 | 5.4e-08 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 76 - 123 | 1.4e-15 | PPR repeat family |
| PPR_3 | PF13812 | 98 - 158 | 1.8e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 105 - 137 | 1.5e-12 | PPR repeat |
| PPR_2 | PF13041 | 109 - 158 | 6e-15 | PPR repeat family |
| PPR | PF01535 | 112 - 141 | 3.9e-07 | PPR repeat |
| PPR_3 | PF13812 | 133 - 190 | 1.3e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 141 - 172 | 1.3e-07 | PPR repeat |
| PPR_2 | PF13041 | 144 - 193 | 3.5e-18 | PPR repeat family |
| PPR | PF01535 | 147 - 177 | 3.3e-08 | PPR repeat |
| PPR_3 | PF13812 | 168 - 226 | 3.5e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 175 - 207 | 1e-12 | PPR repeat |
| PPR_2 | PF13041 | 179 - 228 | 7.3e-19 | PPR repeat family |
| PPR | PF01535 | 182 - 212 | 4.3e-07 | PPR repeat |
| PPR_1 | PF12854 | 210 - 242 | 2.8e-13 | PPR repeat |
| PPR_2 | PF13041 | 214 - 263 | 1e-18 | PPR repeat family |
| PPR | PF01535 | 217 - 247 | 3.7e-09 | PPR repeat |
| PPR_long | PF17177 | 231 - 316 | 1.3e-10 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 238 - 293 | 2e-11 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 244 - 316 | 3e-08 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 245 - 277 | 2.9e-12 | PPR repeat |
| PPR_2 | PF13041 | 250 - 297 | 3.6e-14 | PPR repeat family |
| PPR | PF01535 | 252 - 282 | 1.2e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 143 |
| AccBSI | CCGCTC | 1 cut(s) | 809 |
| AccI | GTMKAC | 1 cut(s) | 19 |
| AccIII | TCCGGA | 1 cut(s) | 640 |
| AciI | CCGC | 3 cut(s) | 345, 389, 807 |
| AclWI | GGATC | 2 cut(s) | 591, 939 |
| AcoI | YGGCCR | 1 cut(s) | 879 |
| AcsI | RAATTY | 1 cut(s) | 318 |
| AcuI | CTGAAG | 1 cut(s) | 516 |
| AfeI | AGCGCT | 1 cut(s) | 87 |
| AgsI | TTSAA | 2 cut(s) | 8, 184 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 26, 172 |
| AluBI | AGCT | 3 cut(s) | 92, 633, 885 |
| AluI | AGCT | 3 cut(s) | 92, 633, 885 |
| Alw26I | GTCTC | 1 cut(s) | 490 |
| AlwI | GGATC | 2 cut(s) | 591, 939 |
| Aor13HI | TCCGGA | 1 cut(s) | 640 |
| Aor51HI | AGCGCT | 1 cut(s) | 87 |
| AoxI | GGCC | 1 cut(s) | 879 |
| ApeKI | GCWGC | 2 cut(s) | 400, 633 |
| ApoI | RAATTY | 1 cut(s) | 318 |
| AspLEI | GCGC | 2 cut(s) | 88, 606 |
| AsuHPI | GGTGA | 3 cut(s) | 176, 521, 806 |
| AsuNHI | GCTAGC | 2 cut(s) | 88, 623 |
| BalI | TGGCCA | 1 cut(s) | 881 |
| BbvI | GCAGC | 2 cut(s) | 387, 620 |
| BccI | CCATC | 6 cut(s) | 154, 193, 251, 372, 560, 613 |
| BclI | TGATCA | 1 cut(s) | 456 |
| BcoDI | GTCTC | 1 cut(s) | 490 |
| BfaI | CTAG | 3 cut(s) | 89, 624, 837 |
| BfmI | CTRYAG | 2 cut(s) | 340, 935 |
| BfoI | RGCGCY | 1 cut(s) | 89 |
| BisI | GCNGC | 3 cut(s) | 401, 634, 807 |
| BlsI | GCNGC | 3 cut(s) | 402, 635, 808 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 26, 172 |
| BmiI | GGNNCC | 1 cut(s) | 849 |
| BmsI | GCATC | 5 cut(s) | 376, 586, 714, 736, 793 |
| BmtI | GCTAGC | 2 cut(s) | 92, 627 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 622, 654 |
| BpuEI | CTTGAG | 1 cut(s) | 795 |
| Bsa29I | ATCGAT | 2 cut(s) | 249, 564 |
| BsaI | GGTCTC | 1 cut(s) | 490 |
| BsaJI | CCNNGG | 1 cut(s) | 489 |
| BsaWI | WCCGGW | 1 cut(s) | 640 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| BseAI | TCCGGA | 1 cut(s) | 640 |
| BseCI | ATCGAT | 2 cut(s) | 249, 564 |
| BseDI | CCNNGG | 1 cut(s) | 489 |
| BseGI | GGATG | 3 cut(s) | 20, 649, 970 |
| BseMII | CTCAG | 1 cut(s) | 162 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseXI | GCAGC | 2 cut(s) | 387, 620 |
| Bsh1285I | CGRYCG | 1 cut(s) | 253 |
| BshFI | GGCC | 1 cut(s) | 881 |
| BshVI | ATCGAT | 2 cut(s) | 249, 564 |
| BsiEI | CGRYCG | 1 cut(s) | 253 |
| BsiSI | CCGG | 1 cut(s) | 641 |
| BsmAI | GTCTC | 1 cut(s) | 490 |
| BsnI | GGCC | 1 cut(s) | 881 |
| Bso31I | GGTCTC | 1 cut(s) | 490 |
| Bsp13I | TCCGGA | 1 cut(s) | 640 |
| Bsp143I | GATC | 9 cut(s) | 100, 250, 411, 456, 561, 583, 796, 831, 931 |
| BspACI | CCGC | 3 cut(s) | 345, 389, 807 |
| BspANI | GGCC | 1 cut(s) | 881 |
| BspCNI | CTCAG | 1 cut(s) | 163 |
| BspDI | ATCGAT | 2 cut(s) | 249, 564 |
| BspEI | TCCGGA | 1 cut(s) | 640 |
| BspLI | GGNNCC | 1 cut(s) | 849 |
| BspMAI | CTGCAG | 1 cut(s) | 939 |
| BspOI | GCTAGC | 2 cut(s) | 92, 627 |
| BspPI | GGATC | 2 cut(s) | 591, 939 |
| BspTNI | GGTCTC | 1 cut(s) | 490 |
| BsrBI | CCGCTC | 1 cut(s) | 809 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 1 cut(s) | 489 |
| BssMI | GATC | 9 cut(s) | 100, 250, 411, 456, 561, 583, 796, 831, 931 |
| Bst4CI | ACNGT | 3 cut(s) | 56, 509, 754 |
| Bst6I | CTCTTC | 2 cut(s) | 727, 935 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 400, 633 |
| BstC8I | GCNNGC | 5 cut(s) | 90, 578, 625, 879, 883 |
| BstDEI | CTNAG | 2 cut(s) | 171, 191 |
| BstF5I | GGATG | 3 cut(s) | 20, 649, 970 |
| BstH2I | RGCGCY | 1 cut(s) | 89 |
| BstHHI | GCGC | 2 cut(s) | 88, 606 |
| BstKTI | GATC | 9 cut(s) | 103, 253, 414, 459, 564, 586, 799, 834, 934 |
| BstMAI | GTCTC | 1 cut(s) | 490 |
| BstMBI | GATC | 9 cut(s) | 100, 250, 411, 456, 561, 583, 796, 831, 931 |
| BstMCI | CGRYCG | 1 cut(s) | 253 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 400, 633 |
| BstNSI | RCATGY | 2 cut(s) | 517, 610 |
| BstSFI | CTRYAG | 2 cut(s) | 340, 935 |
| BstV1I | GCAGC | 2 cut(s) | 387, 620 |
| BstX2I | RGATCY | 1 cut(s) | 931 |
| BstYI | RGATCY | 1 cut(s) | 931 |
| Bsu15I | ATCGAT | 2 cut(s) | 249, 564 |
| BsuRI | GGCC | 1 cut(s) | 881 |
| BsuTUI | ATCGAT | 2 cut(s) | 249, 564 |
| BtsCI | GGATG | 3 cut(s) | 20, 649, 970 |
| BtsIMutI | CAGTG | 4 cut(s) | 44, 168, 297, 454 |
| Cac8I | GCNNGC | 5 cut(s) | 90, 578, 625, 879, 883 |
| CfoI | GCGC | 2 cut(s) | 88, 606 |
| ClaI | ATCGAT | 2 cut(s) | 249, 564 |
| CviAII | CATG | 6 cut(s) | 224, 281, 308, 514, 607, 776 |
| DdeI | CTNAG | 2 cut(s) | 171, 191 |
| DpnI | GATC | 9 cut(s) | 102, 252, 413, 458, 563, 585, 798, 833, 933 |
| DpnII | GATC | 9 cut(s) | 100, 250, 411, 456, 561, 583, 796, 831, 931 |
| DriI | GACNNNNNGTC | 2 cut(s) | 26, 172 |
| EaeI | YGGCCR | 1 cut(s) | 879 |
| Eam1104I | CTCTTC | 2 cut(s) | 727, 935 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 26, 172 |
| EarI | CTCTTC | 2 cut(s) | 727, 935 |
| Eco31I | GGTCTC | 1 cut(s) | 490 |
| Eco47III | AGCGCT | 1 cut(s) | 87 |
| Eco57I | CTGAAG | 1 cut(s) | 516 |
| EcoT22I | ATGCAT | 3 cut(s) | 309, 466, 729 |
| FaeI | CATG | 6 cut(s) | 227, 284, 311, 517, 610, 779 |
| FatI | CATG | 6 cut(s) | 223, 280, 307, 513, 606, 775 |
| FbaI | TGATCA | 1 cut(s) | 456 |
| FblI | GTMKAC | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 3 cut(s) | 401, 634, 807 |
| FokI | GGATG | 2 cut(s) | 27, 656 |
| Fsp4HI | GCNGC | 3 cut(s) | 401, 634, 807 |
| FspBI | CTAG | 3 cut(s) | 89, 624, 837 |
| GlaI | GCGC | 2 cut(s) | 87, 605 |
| GluI | GCNGC | 3 cut(s) | 401, 634, 807 |
| HaeII | RGCGCY | 1 cut(s) | 89 |
| HaeIII | GGCC | 1 cut(s) | 881 |
| HapII | CCGG | 1 cut(s) | 641 |
| HhaI | GCGC | 2 cut(s) | 88, 606 |
| Hin1II | CATG | 6 cut(s) | 227, 284, 311, 517, 610, 779 |
| Hin6I | GCGC | 2 cut(s) | 86, 604 |
| HinP1I | GCGC | 2 cut(s) | 86, 604 |
| HincII | GTYRAC | 1 cut(s) | 697 |
| HindII | GTYRAC | 1 cut(s) | 697 |
| HinfI | GANTC | 5 cut(s) | 173, 184, 356, 614, 772 |
| HpaII | CCGG | 1 cut(s) | 641 |
| HphI | GGTGA | 3 cut(s) | 176, 521, 806 |
| Hpy166II | GTNNAC | 3 cut(s) | 20, 39, 697 |
| Hpy188I | TCNGA | 1 cut(s) | 490 |
| Hpy188III | TCNNGA | 5 cut(s) | 431, 641, 800, 812, 868 |
| Hpy8I | GTNNAC | 3 cut(s) | 20, 39, 697 |
| HpyAV | CCTTC | 4 cut(s) | 110, 470, 827, 892 |
| HpyCH4III | ACNGT | 3 cut(s) | 56, 509, 754 |
| HpyCH4IV | ACGT | 1 cut(s) | 35 |
| HpyCH4V | TGCA | 9 cut(s) | 261, 307, 452, 464, 576, 727, 891, 920, 937 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 400, 633 |
| HpyF3I | CTNAG | 2 cut(s) | 171, 191 |
| HpySE526I | ACGT | 1 cut(s) | 35 |
| Hsp92II | CATG | 6 cut(s) | 227, 284, 311, 517, 610, 779 |
| HspAI | GCGC | 2 cut(s) | 86, 604 |
| Kpn2I | TCCGGA | 1 cut(s) | 640 |
| Ksp22I | TGATCA | 1 cut(s) | 456 |
| Kzo9I | GATC | 9 cut(s) | 100, 250, 411, 456, 561, 583, 796, 831, 931 |
| LmnI | GCTCC | 2 cut(s) | 391, 853 |
| LpnPI | CCDG | 7 cut(s) | 357, 444, 566, 654, 863, 881, 895 |
| Lsp1109I | GCAGC | 2 cut(s) | 387, 620 |
| LweI | GCATC | 5 cut(s) | 376, 586, 714, 736, 793 |
| MaeI | CTAG | 3 cut(s) | 89, 624, 837 |
| MaeII | ACGT | 1 cut(s) | 35 |
| MaeIII | GTNAC | 6 cut(s) | 31, 164, 439, 509, 649, 754 |
| MalI | GATC | 9 cut(s) | 102, 252, 413, 458, 563, 585, 798, 833, 933 |
| MbiI | CCGCTC | 1 cut(s) | 809 |
| MboI | GATC | 9 cut(s) | 100, 250, 411, 456, 561, 583, 796, 831, 931 |
| MboII | GAAGA | 5 cut(s) | 125, 215, 509, 744, 952 |
| MfeI | CAATTG | 1 cut(s) | 395 |
| MflI | RGATCY | 1 cut(s) | 931 |
| MlsI | TGGCCA | 1 cut(s) | 881 |
| MluCI | AATT | 6 cut(s) | 138, 318, 395, 738, 853, 902 |
| MluNI | TGGCCA | 1 cut(s) | 881 |
| MlyI | GAGTC | 2 cut(s) | 182, 350 |
| MnlI | CCTC | 8 cut(s) | 61, 484, 518, 674, 728, 922, 940, 955 |
| Mox20I | TGGCCA | 1 cut(s) | 881 |
| Mph1103I | ATGCAT | 3 cut(s) | 309, 466, 729 |
| MroI | TCCGGA | 1 cut(s) | 640 |
| MscI | TGGCCA | 1 cut(s) | 881 |
| MslI | CAYNNNNRTG | 3 cut(s) | 47, 279, 302 |
| Msp20I | TGGCCA | 1 cut(s) | 881 |
| MspA1I | CMGCKG | 1 cut(s) | 345 |
| MspI | CCGG | 1 cut(s) | 641 |
| MunI | CAATTG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 400, 633 |
| NdeII | GATC | 9 cut(s) | 100, 250, 411, 456, 561, 583, 796, 831, 931 |
| NheI | GCTAGC | 2 cut(s) | 88, 623 |
| NlaIII | CATG | 6 cut(s) | 227, 284, 311, 517, 610, 779 |
| NlaIV | GGNNCC | 1 cut(s) | 849 |
| NmuCI | GTSAC | 3 cut(s) | 164, 509, 649 |
| NsiI | ATGCAT | 3 cut(s) | 309, 466, 729 |
| NspI | RCATGY | 2 cut(s) | 517, 610 |
| PfeI | GAWTC | 3 cut(s) | 184, 614, 772 |
| PkrI | GCNGC | 3 cut(s) | 402, 635, 808 |
| Ple19I | CGATCG | 1 cut(s) | 253 |
| PleI | GAGTC | 2 cut(s) | 181, 350 |
| PpsI | GAGTC | 2 cut(s) | 181, 350 |
| PsiI | TTATAA | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 1 cut(s) | 849 |
| PstI | CTGCAG | 1 cut(s) | 939 |
| PsuI | RGATCY | 1 cut(s) | 931 |
| PvuI | CGATCG | 1 cut(s) | 253 |
| RseI | CAYNNNNRTG | 3 cut(s) | 47, 279, 302 |
| SatI | GCNGC | 3 cut(s) | 401, 634, 807 |
| Sau3AI | GATC | 9 cut(s) | 100, 250, 411, 456, 561, 583, 796, 831, 931 |
| SchI | GAGTC | 2 cut(s) | 182, 350 |
| SfaNI | GCATC | 5 cut(s) | 376, 586, 714, 736, 793 |
| SfcI | CTRYAG | 2 cut(s) | 340, 935 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 47, 279, 302 |
| SmlI | CTYRAG | 1 cut(s) | 810 |
| SmoI | CTYRAG | 1 cut(s) | 810 |
| Sse9I | AATT | 6 cut(s) | 138, 318, 395, 738, 853, 902 |
| SsiI | CCGC | 3 cut(s) | 345, 389, 807 |
| SspI | AATATT | 1 cut(s) | 924 |
| SspMI | CTAG | 3 cut(s) | 89, 624, 837 |
| TaaI | ACNGT | 3 cut(s) | 56, 509, 754 |
| TaiI | ACGT | 1 cut(s) | 38 |
| TaqI | TCGA | 7 cut(s) | 73, 249, 414, 564, 617, 730, 801 |
| TasI | AATT | 6 cut(s) | 138, 318, 395, 738, 853, 902 |
| TauI | GCSGC | 1 cut(s) | 809 |
| TfiI | GAWTC | 3 cut(s) | 184, 614, 772 |
| TscAI | CASTG | 4 cut(s) | 51, 175, 304, 454 |
| TseFI | GTSAC | 3 cut(s) | 164, 509, 649 |
| TseI | GCWGC | 2 cut(s) | 400, 633 |
| Tsp45I | GTSAC | 3 cut(s) | 164, 509, 649 |
| TspDTI | ATGAA | 2 cut(s) | 65, 764 |
| TspGWI | ACGGA | 2 cut(s) | 147, 282 |
| TspRI | CASTG | 4 cut(s) | 51, 175, 304, 454 |
| XapI | RAATTY | 1 cut(s) | 318 |
| XceI | RCATGY | 2 cut(s) | 517, 610 |
| XmiI | GTMKAC | 1 cut(s) | 19 |
| XspI | CTAG | 3 cut(s) | 89, 624, 837 |
| Zsp2I | ATGCAT | 3 cut(s) | 309, 466, 729 |