Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Forward (+)

8519890 .. 8521707

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1099700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGGCTTCTTCTTCTTTGAAGGTTGGTTATGGCATCGCCAGCAGACTGAGAGTGAGAGGTATTCGGCCTATGTCTTGTCTTCTTCTTCAGTACTCTACTCTTTTTCTGTTCCCCAACAGTTACTTGGCTCCGTTTCACTCTCGACCTTGTTATCCAACCAAATCTACAAACACCCATTTGCAGCGGCCTGCCAAAGTCACTAATCTTGAGGATGCACTCCATGTGTTCGACGAATTGCTTCATATGCGTCCTCTGCCTTCCGTTGTCCGTTTCAATCAAATCATGGGTCAAGTCGCCAAGCTGAAACGTTATTCGGCAGTAGTCTCCTTCAATAACCGAATGGGTCTGTCGGGAATTCGTCCTGATGTTTATACTCTAAACATTATCATTAATTGTTTTTTTCATCTTAACCAAATGGGGTTTGGTTTGTCTGTCTTGGGAAAATTCTTCAAACTTGGTTTTGAACCTGATGTCACGACCTTCAACACTCTAATCAACGGATTCCTTCTTCAGAATAGAGAGGCTGATGCTGTCGGTGTTCTGAATAAAATGATGGAGAGTGGTACTTGTAAGCCCAATGTGGTTACTTTCGGCACACTAGTAAAGGGCCTTTGCTTGAAAGGTAACAACACTGGAGCTATCCAATTGCTTAAGAAGATGGAAGAAGCAGGTTGCAAGCCTGACATAGTTGTCTATAGCACGATCATCGACAGTCTTTGTAAGGACACTATGCTTGTTGATGCGATGAACCTTTTCTCTGAAATGATGAGTAAATGCATTGACCCCAACATCATTACCTATACTTCTTTGATTCATGGAGTATGCAAATTATGGGGGTCAAAAGAAGCTACGAGATTGTTTAATGAAATGGTGAGCAAAGGTATATTTCCAAATCTGCACACCTTCAATGTCTTGGTAGACACCCATTGTAAAGAGGGCTTGGTCGGGGAAGCAAAAAGCATTGTCGAAATGATGACTCAAAGAGGTATTGAGCCTGACACAGTTACTTATAATTCGCTCATGGATGGTTATTGCTTGCGAGGGGAAATGGACAAGGCAAAAAAGGTTTTGGAACTAATGCTTCGCAAGGGATCCATTGTTGATGCTTATAGTTACAACATATTGATAAATGGCTATTGTAAGCATAGAAGGATCGATGACGCACTGATGCTTTTTGAGGAAATGTCTAGTAGCAGACTTGTTCTGAATGTCGTTACTTATAGCACTCTCATGGACGGTTTTTGCAAAGTAGGGAGAATACAGGATGCACAAAAGTTGTTCACTCAGATGCAAGCTTGTGGGCATCTTCCAGATGTTCCCACTTGTAATATTTTACTGGATGGCCTTTGTAAAAACCAAGAACTCCCAATGGCATTGAAACTTTTTCGAGAGATGGTAGATAAAAAGTTGGATCCAAATATTTGGACTTACAATATTCTCATCCAAGGTTTATGCATAGCTGGAAAAGTTGAATATGCAAGGGATCTCTTCCGCAGTTTATCGTCAAGAGGTCTTCAACCTGATACCAGGACGTATAACATAATGATTGGTGGCTTTTGTAATGGAGGGCTAACAAGCGAAGCGAAAAAGTTACTTAAAGAAATGGAAGAGAAAGGCTGTTCTCCAGATGATTGTACCTATAACTTAATCATCCGAGGTTTTTTCAATAACAATGAGCCATCAGAAGCAATGGGACTTATTCAACAAATAGTGGGAAAGGGTTTTGCTGCAGACGCTTCAACTGCGGAATTGATATTTGATATGCTGTCTAAAGATAAAATAGATCCTGCTTTGTTGCCATTGATAGAAAGATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

606

Amino Acids

67.64

Weight (kDa)

8.46

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	86 - 134	4.7e-06	PPR repeat family
PPR_3	PF13812	148 - 202	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	153 - 184	3e-06	PPR repeat
PPR_2	PF13041	156 - 205	3.1e-11	PPR repeat family
PPR_1	PF12854	190 - 221	6.2e-10	PPR repeat
PPR_3	PF13812	191 - 237	4.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	192 - 241	6e-13	PPR repeat family
PPR_1	PF12854	224 - 255	4.5e-11	PPR repeat
PPR_2	PF13041	227 - 276	8.1e-15	PPR repeat family
PPR_long	PF17177	242 - 362	3.9e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	251 - 308	6.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	258 - 291	3.1e-07	PPR repeat
PPR	PF01535	265 - 295	8.9e-06	PPR repeat
PPR_2	PF13041	281 - 311	7.2e-08	PPR repeat family
TPR_24	PF23276	291 - 394	3.4e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	293 - 325	1.5e-07	PPR repeat
PPR_2	PF13041	301 - 345	1e-12	PPR repeat family
PPR_3	PF13812	320 - 379	2.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	328 - 360	2.6e-12	PPR repeat
PPR_2	PF13041	332 - 381	6.4e-17	PPR repeat family
PPR	PF01535	335 - 364	1.2e-08	PPR repeat
TPR_24	PF23276	349 - 465	4.4e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	365 - 396	1.8e-11	PPR repeat
PPR_2	PF13041	368 - 416	6.3e-18	PPR repeat family
PPR	PF01535	370 - 398	2e-09	PPR repeat
PPR_long	PF17177	375 - 514	5.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	400 - 431	1.3e-11	PPR repeat
PPR_2	PF13041	403 - 451	4.1e-16	PPR repeat family
PPR	PF01535	405 - 434	4.4e-07	PPR repeat
PPR_3	PF13812	425 - 482	6.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	434 - 466	3.1e-06	PPR repeat
PPR_2	PF13041	437 - 485	1.2e-17	PPR repeat family
PPR_1	PF12854	470 - 498	8.3e-09	PPR repeat
PPR_2	PF13041	472 - 521	2e-16	PPR repeat family
PPR_3	PF13812	496 - 553	7.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	503 - 536	8.9e-12	PPR repeat
PPR	PF01535	511 - 540	4.9e-09	PPR repeat
PPR_2	PF13041	516 - 555	2.5e-10	PPR repeat family
PPR_2	PF13041	542 - 591	9.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1011
AasI	GACNNNNNNGTC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	918
AciI	CCGC	3 cut(s)	184, 1492, 1745
AclI	AACGTT	1 cut(s)	307
AclWI	GGATC	7 cut(s)	1086, 1099, 1160, 1406, 1419, 1491, 1778
AcsI	RAATTY	2 cut(s)	354, 443
AcuI	CTGAAG	2 cut(s)	71, 494
AfaI	GTAC	3 cut(s)	92, 565, 1636
AflII	CTTAAG	1 cut(s)	650
AhlI	ACTAGT	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	1526
AluBI	AGCT	5 cut(s)	301, 638, 848, 1295, 1460
AluI	AGCT	5 cut(s)	301, 638, 848, 1295, 1460
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	7 cut(s)	1086, 1099, 1160, 1406, 1419, 1491, 1778
AoxI	GGCC	4 cut(s)	65, 185, 607, 1342
ApeKI	GCWGC	2 cut(s)	181, 1727
ApoI	RAATTY	2 cut(s)	354, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	2 cut(s)	237, 752
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	1 cut(s)	883
BamHI	GGATCC	2 cut(s)	1091, 1411
BbsI	GAAGAC	2 cut(s)	71, 1505
BbvI	GCAGC	2 cut(s)	193, 1714
BccI	CCATC	6 cut(s)	547, 652, 1019, 1334, 1387, 1687
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BciT130I	CCWGG	1 cut(s)	1528
BcoDI	GTCTC	1 cut(s)	328
BcuI	ACTAGT	1 cut(s)	598
BfaI	CTAG	2 cut(s)	599, 1188
BfmI	CTRYAG	2 cut(s)	694, 1728
BfrI	CTTAAG	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	659
BisI	GCNGC	3 cut(s)	182, 185, 1728
BlsI	GCNGC	3 cut(s)	183, 186, 1729
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	1528
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	3 cut(s)	129, 1093, 1413
BmrFI	CCNGG	1 cut(s)	1528
BmsI	GCATC	9 cut(s)	42, 202, 517, 730, 1093, 1158, 1255, 1278, 1312
BpiI	GAAGAC	2 cut(s)	71, 1505
BpmI	CTGGAG	2 cut(s)	654, 1608
BpuEI	CTTGAG	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	1155
BsaJI	CCNNGG	2 cut(s)	1444, 1654
Bse1I	ACTGG	2 cut(s)	637, 1341
Bse3DI	GCAATG	1 cut(s)	1695
BseBI	CCWGG	1 cut(s)	1528
BseCI	ATCGAT	1 cut(s)	1155
BseDI	CCNNGG	2 cut(s)	1444, 1654
BseGI	GGATG	6 cut(s)	217, 1030, 1270, 1345, 1440, 1650
BseMI	GCAATG	1 cut(s)	1695
BseMII	CTCAG	2 cut(s)	38, 1298
BseNI	ACTGG	2 cut(s)	637, 1341
BseXI	GCAGC	2 cut(s)	193, 1714
BsgI	GTGCAG	1 cut(s)	881
BshFI	GGCC	4 cut(s)	67, 187, 609, 1344
BshVI	ATCGAT	1 cut(s)	1155
BslFI	GGGAC	1 cut(s)	1707
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	1707
BsnI	GGCC	4 cut(s)	67, 187, 609, 1344
Bsp143I	GATC	7 cut(s)	702, 1091, 1152, 1411, 1483, 1783, 1811
BspACI	CCGC	3 cut(s)	184, 1492, 1745
BspANI	GGCC	4 cut(s)	67, 187, 609, 1344
BspCNI	CTCAG	2 cut(s)	39, 1297
BspDI	ATCGAT	1 cut(s)	1155
BspLI	GGNNCC	3 cut(s)	129, 1093, 1413
BspMAI	CTGCAG	1 cut(s)	1732
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	7 cut(s)	1086, 1099, 1160, 1406, 1419, 1491, 1778
BspTI	CTTAAG	1 cut(s)	650
BsrDI	GCAATG	1 cut(s)	1695
BsrI	ACTGG	2 cut(s)	637, 1341
BssECI	CCNNGG	2 cut(s)	1444, 1654
BssMI	GATC	7 cut(s)	702, 1091, 1152, 1411, 1483, 1783, 1811
BssT1I	CCWWGG	1 cut(s)	1444
Bst2UI	CCWGG	1 cut(s)	1528
Bst4CI	ACNGT	4 cut(s)	119, 713, 1003, 1238
Bst6I	CTCTTC	2 cut(s)	1493, 1602
BstAFI	CTTAAG	1 cut(s)	650
BstC8I	GCNNGC	5 cut(s)	40, 189, 677, 1037, 1293
BstDEI	CTNAG	2 cut(s)	47, 1284
BstF5I	GGATG	6 cut(s)	217, 1030, 1270, 1345, 1440, 1650
BstKTI	GATC	7 cut(s)	705, 1094, 1155, 1414, 1486, 1786, 1814
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	7 cut(s)	702, 1091, 1152, 1411, 1483, 1783, 1811
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 244, 253, 1733, 1742
BstNI	CCWGG	1 cut(s)	1528
BstSCI	CCNGG	1 cut(s)	1526
BstSFI	CTRYAG	2 cut(s)	694, 1728
BstV1I	GCAGC	2 cut(s)	193, 1714
BstV2I	GAAGAC	2 cut(s)	71, 1505
BstX2I	RGATCY	4 cut(s)	1091, 1411, 1483, 1783
BstXI	CCANNNNNNTGG	1 cut(s)	1422
BstYI	RGATCY	4 cut(s)	1091, 1411, 1483, 1783
Bsu15I	ATCGAT	1 cut(s)	1155
BsuRI	GGCC	4 cut(s)	67, 187, 609, 1344
BsuTUI	ATCGAT	1 cut(s)	1155
BtgZI	GCGATG	2 cut(s)	19, 758
BtsCI	GGATG	6 cut(s)	217, 1030, 1270, 1345, 1440, 1650
BtsIMutI	CAGTG	2 cut(s)	630, 1163
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	5 cut(s)	40, 189, 677, 1037, 1293
Cfr13I	GGNCC	1 cut(s)	607
ClaI	ATCGAT	1 cut(s)	1155
CseI	GACGC	3 cut(s)	236, 1169, 1742
Csp6I	GTAC	3 cut(s)	91, 564, 1635
CviAII	CATG	5 cut(s)	221, 283, 815, 1021, 1231
CviQI	GTAC	3 cut(s)	91, 564, 1635
DdeI	CTNAG	2 cut(s)	47, 1284
DpnI	GATC	7 cut(s)	704, 1093, 1154, 1413, 1485, 1785, 1813
DpnII	GATC	7 cut(s)	702, 1091, 1152, 1411, 1483, 1783, 1811
DrdI	GACNNNNNNGTC	1 cut(s)	689
DseDI	GACNNNNNNGTC	1 cut(s)	689
Eam1104I	CTCTTC	2 cut(s)	1493, 1602
EarI	CTCTTC	2 cut(s)	1493, 1602
Eco130I	CCWWGG	1 cut(s)	1444
Eco57I	CTGAAG	2 cut(s)	71, 494
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	1526
EcoT14I	CCWWGG	1 cut(s)	1444
EcoT22I	ATGCAT	2 cut(s)	779, 1457
ErhI	CCWWGG	1 cut(s)	1444
FaeI	CATG	5 cut(s)	224, 286, 818, 1024, 1234
FaqI	GGGAC	1 cut(s)	1707
FatI	CATG	5 cut(s)	220, 282, 814, 1020, 1230
FauNDI	CATATG	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	3 cut(s)	182, 185, 1728
FokI	GGATG	6 cut(s)	224, 1037, 1277, 1352, 1427, 1637
Fsp4HI	GCNGC	3 cut(s)	182, 185, 1728
FspBI	CTAG	2 cut(s)	599, 1188
GluI	GCNGC	3 cut(s)	182, 185, 1728
GsuI	CTGGAG	2 cut(s)	654, 1608
HaeIII	GGCC	4 cut(s)	67, 187, 609, 1344
HgaI	GACGC	3 cut(s)	236, 1169, 1742
Hin1II	CATG	5 cut(s)	224, 286, 818, 1024, 1234
HindIII	AAGCTT	1 cut(s)	1293
HinfI	GANTC	3 cut(s)	501, 811, 976
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	2 cut(s)	919, 1281
Hpy188I	TCNGA	7 cut(s)	513, 543, 760, 1206, 1287, 1655, 1684
Hpy188III	TCNNGA	9 cut(s)	141, 206, 351, 362, 475, 1310, 1388, 1506, 1625
Hpy8I	GTNNAC	2 cut(s)	919, 1281
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	7 cut(s)	13, 267, 337, 490, 515, 913, 1143
HpyCH4III	ACNGT	4 cut(s)	119, 713, 1003, 1238
HpyCH4IV	ACGT	2 cut(s)	307, 1532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 244, 253, 1733, 1742
HpyF3I	CTNAG	2 cut(s)	47, 1284
HpySE526I	ACGT	2 cut(s)	307, 1532
Hsp92II	CATG	5 cut(s)	224, 286, 818, 1024, 1234
Kzo9I	GATC	7 cut(s)	702, 1091, 1152, 1411, 1483, 1783, 1811
LmnI	GCTCC	2 cut(s)	133, 635
Lsp1109I	GCAGC	2 cut(s)	193, 1714
LweI	GCATC	9 cut(s)	42, 202, 517, 730, 1093, 1158, 1255, 1278, 1312
MaeI	CTAG	2 cut(s)	599, 1188
MaeII	ACGT	2 cut(s)	307, 1532
MaeIII	GTNAC	9 cut(s)	119, 196, 472, 583, 623, 1003, 1112, 1213, 1590
MalI	GATC	7 cut(s)	704, 1093, 1154, 1413, 1485, 1785, 1813
MboI	GATC	7 cut(s)	702, 1091, 1152, 1411, 1483, 1783, 1811
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	4 cut(s)	1091, 1411, 1483, 1783
MluCI	AATT	8 cut(s)	233, 354, 391, 443, 644, 827, 1012, 1748
MlyI	GAGTC	1 cut(s)	970
MmeI	TCCRAC	2 cut(s)	179, 1389
Mph1103I	ATGCAT	2 cut(s)	779, 1457
MroXI	GAANNNNTTC	2 cut(s)	237, 752
MseI	TTAA	6 cut(s)	390, 408, 651, 861, 1596, 1646
MslI	CAYNNNNRTG	2 cut(s)	1229, 1286
MspA1I	CMGCKG	1 cut(s)	184
MspCI	CTTAAG	1 cut(s)	650
MspR9I	CCNGG	1 cut(s)	1528
MunI	CAATTG	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	1528
MwoI	GCNNNNNNNGC	5 cut(s)	39, 244, 253, 1733, 1742
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	7 cut(s)	702, 1091, 1152, 1411, 1483, 1783, 1811
NlaIII	CATG	5 cut(s)	224, 286, 818, 1024, 1234
NlaIV	GGNNCC	3 cut(s)	129, 1093, 1413
NmuCI	GTSAC	2 cut(s)	196, 472
NsiI	ATGCAT	2 cut(s)	779, 1457
PdmI	GAANNNNTTC	2 cut(s)	237, 752
PfeI	GAWTC	2 cut(s)	501, 811
PkrI	GCNGC	3 cut(s)	183, 186, 1729
PleI	GAGTC	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	970
PshBI	ATTAAT	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	1011
Psp1406I	AACGTT	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	1526
PspGI	CCWGG	1 cut(s)	1526
PspN4I	GGNNCC	3 cut(s)	129, 1093, 1413
PspPI	GGNCC	1 cut(s)	607
PstI	CTGCAG	1 cut(s)	1732
PsuI	RGATCY	4 cut(s)	1091, 1411, 1483, 1783
RsaI	GTAC	3 cut(s)	92, 565, 1636
RsaNI	GTAC	3 cut(s)	91, 564, 1635
RseI	CAYNNNNRTG	2 cut(s)	1229, 1286
SaqAI	TTAA	6 cut(s)	390, 408, 651, 861, 1596, 1646
SatI	GCNGC	3 cut(s)	182, 185, 1728
Sau3AI	GATC	7 cut(s)	702, 1091, 1152, 1411, 1483, 1783, 1811
Sau96I	GGNCC	1 cut(s)	607
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	970
ScrFI	CCNGG	1 cut(s)	1528
SfaNI	GCATC	9 cut(s)	42, 202, 517, 730, 1093, 1158, 1255, 1278, 1312
SfcI	CTRYAG	2 cut(s)	694, 1728
SmiMI	CAYNNNNRTG	2 cut(s)	1229, 1286
SmlI	CTYRAG	2 cut(s)	206, 650
SmoI	CTYRAG	2 cut(s)	206, 650
SpeI	ACTAGT	1 cut(s)	598
Sse9I	AATT	8 cut(s)	233, 354, 391, 443, 644, 827, 1012, 1748
SsiI	CCGC	3 cut(s)	184, 1492, 1745
SspI	AATATT	3 cut(s)	1330, 1420, 1435
SspMI	CTAG	2 cut(s)	599, 1188
StyD4I	CCNGG	1 cut(s)	1526
StyI	CCWWGG	1 cut(s)	1444
TaaI	ACNGT	4 cut(s)	119, 713, 1003, 1238
TaiI	ACGT	2 cut(s)	310, 1535
TaqI	TCGA	6 cut(s)	142, 228, 708, 966, 1155, 1387
TasI	AATT	8 cut(s)	233, 354, 391, 443, 644, 827, 1012, 1748
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	501, 811
Tru1I	TTAA	6 cut(s)	390, 408, 651, 861, 1596, 1646
Tru9I	TTAA	6 cut(s)	390, 408, 651, 861, 1596, 1646
TscAI	CASTG	2 cut(s)	637, 1170
TseFI	GTSAC	2 cut(s)	196, 472
TseI	GCWGC	2 cut(s)	181, 1727
Tsp45I	GTSAC	2 cut(s)	196, 472
TspDTI	ATGAA	5 cut(s)	230, 392, 761, 803, 879
TspGWI	ACGGA	4 cut(s)	120, 250, 257, 513
TspRI	CASTG	2 cut(s)	637, 1170
Vha464I	CTTAAG	1 cut(s)	650
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	2 cut(s)	354, 443
XcmI	CCANNNNNNNNNTGG	2 cut(s)	121, 419
XmiI	GTMKAC	1 cut(s)	918
XmnI	GAANNNNTTC	2 cut(s)	237, 752
XspI	CTAG	2 cut(s)	599, 1188
ZrmI	AGTACT	1 cut(s)	92
Zsp2I	ATGCAT	2 cut(s)	779, 1457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.