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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 178 |
| AcsI | RAATTY | 2 cut(s) | 103, 286 |
| AfaI | GTAC | 1 cut(s) | 350 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 84 |
| AflIII | ACRYGT | 1 cut(s) | 6 |
| AgsI | TTSAA | 4 cut(s) | 194, 233, 373, 391 |
| AluBI | AGCT | 2 cut(s) | 40, 226 |
| AluI | AGCT | 2 cut(s) | 40, 226 |
| Alw26I | GTCTC | 1 cut(s) | 47 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 226 |
| ApoI | RAATTY | 2 cut(s) | 103, 286 |
| AspS9I | GGNCC | 1 cut(s) | 111 |
| AsuC2I | CCSGG | 1 cut(s) | 183 |
| AvaII | GGWCC | 1 cut(s) | 111 |
| BanI | GGYRCC | 1 cut(s) | 178 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 25, 57 |
| BccI | CCATC | 1 cut(s) | 43 |
| BceAI | ACGGC | 1 cut(s) | 72 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcnI | CCSGG | 1 cut(s) | 183 |
| BcoDI | GTCTC | 1 cut(s) | 47 |
| BfmI | CTRYAG | 1 cut(s) | 205 |
| Bme1390I | CCNGG | 1 cut(s) | 183 |
| Bme18I | GGWCC | 1 cut(s) | 111 |
| BmgT120I | GGNCC | 1 cut(s) | 111 |
| BmiI | GGNNCC | 2 cut(s) | 180, 261 |
| BmrFI | CCNGG | 1 cut(s) | 183 |
| BmsI | GCATC | 1 cut(s) | 222 |
| BpuMI | CCSGG | 1 cut(s) | 183 |
| BsaJI | CCNNGG | 1 cut(s) | 182 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 84 |
| BseDI | CCNNGG | 1 cut(s) | 182 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 84 |
| BseRI | GAGGAG | 1 cut(s) | 252 |
| BshNI | GGYRCC | 1 cut(s) | 178 |
| BsiSI | CCGG | 1 cut(s) | 182 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 84 |
| BsmAI | GTCTC | 1 cut(s) | 47 |
| BsmBI | CGTCTC | 1 cut(s) | 47 |
| BsmI | GAATGC | 1 cut(s) | 117 |
| Bsp1407I | TGTACA | 1 cut(s) | 348 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspHI | TCATGA | 1 cut(s) | 16 |
| BspLI | GGNNCC | 2 cut(s) | 180, 261 |
| BspMAI | CTGCAG | 1 cut(s) | 209 |
| BspT107I | GGYRCC | 1 cut(s) | 178 |
| BsrGI | TGTACA | 1 cut(s) | 348 |
| BssECI | CCNNGG | 1 cut(s) | 182 |
| BssMI | GATC | 1 cut(s) | 301 |
| Bst6I | CTCTTC | 2 cut(s) | 83, 324 |
| BstAUI | TGTACA | 1 cut(s) | 348 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMAI | GTCTC | 1 cut(s) | 47 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 37 |
| BstNSI | RCATGY | 1 cut(s) | 10 |
| BstSCI | CCNGG | 1 cut(s) | 181 |
| BstSFI | CTRYAG | 1 cut(s) | 205 |
| CaiI | CAGNNNCTG | 1 cut(s) | 226 |
| CciI | TCATGA | 1 cut(s) | 16 |
| Cfr13I | GGNCC | 1 cut(s) | 111 |
| Csp6I | GTAC | 1 cut(s) | 349 |
| CviAII | CATG | 4 cut(s) | 7, 17, 175, 325 |
| CviJI | RGCY | 5 cut(s) | 40, 59, 226, 260, 398 |
| CviKI_1 | RGCY | 5 cut(s) | 40, 59, 226, 260, 398 |
| CviQI | GTAC | 1 cut(s) | 349 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| DraI | TTTAAA | 1 cut(s) | 129 |
| Eam1104I | CTCTTC | 2 cut(s) | 83, 324 |
| EarI | CTCTTC | 2 cut(s) | 83, 324 |
| Eco47I | GGWCC | 1 cut(s) | 111 |
| EcoO109I | RGGNCCY | 1 cut(s) | 111 |
| EcoRI | GAATTC | 1 cut(s) | 286 |
| Esp3I | CGTCTC | 1 cut(s) | 47 |
| FaeI | CATG | 4 cut(s) | 10, 20, 178, 328 |
| FaiI | YATR | 8 cut(s) | 8, 18, 24, 162, 176, 309, 326, 368 |
| FatI | CATG | 4 cut(s) | 6, 16, 174, 324 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| HapII | CCGG | 1 cut(s) | 182 |
| Hin1II | CATG | 4 cut(s) | 10, 20, 178, 328 |
| HindIII | AAGCTT | 1 cut(s) | 38 |
| HinfI | GANTC | 4 cut(s) | 82, 146, 250, 383 |
| HpaII | CCGG | 1 cut(s) | 182 |
| Hpy166II | GTNNAC | 3 cut(s) | 155, 202, 338 |
| Hpy188I | TCNGA | 1 cut(s) | 87 |
| Hpy188III | TCNNGA | 2 cut(s) | 17, 391 |
| Hpy8I | GTNNAC | 3 cut(s) | 155, 202, 338 |
| HpyAV | CCTTC | 1 cut(s) | 27 |
| HpyCH4V | TGCA | 3 cut(s) | 117, 207, 213 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 37 |
| Hsp92II | CATG | 4 cut(s) | 10, 20, 178, 328 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LmnI | GCTCC | 1 cut(s) | 265 |
| LpnPI | CCDG | 3 cut(s) | 127, 195, 242 |
| LweI | GCATC | 1 cut(s) | 222 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 2 cut(s) | 100, 311 |
| MluCI | AATT | 5 cut(s) | 103, 273, 286, 330, 344 |
| MlyI | GAGTC | 1 cut(s) | 76 |
| MnlI | CCTC | 4 cut(s) | 85, 116, 273, 327 |
| MseI | TTAA | 3 cut(s) | 128, 279, 329 |
| MslI | CAYNNNNRTG | 3 cut(s) | 21, 165, 176 |
| MspI | CCGG | 1 cut(s) | 182 |
| MspR9I | CCNGG | 1 cut(s) | 183 |
| Mva1269I | GAATGC | 1 cut(s) | 117 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 37 |
| NciI | CCSGG | 1 cut(s) | 183 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIII | CATG | 4 cut(s) | 10, 20, 178, 328 |
| NlaIV | GGNNCC | 2 cut(s) | 180, 261 |
| NspI | RCATGY | 1 cut(s) | 10 |
| PagI | TCATGA | 1 cut(s) | 16 |
| PciI | ACATGT | 1 cut(s) | 6 |
| PctI | GAATGC | 1 cut(s) | 117 |
| PfeI | GAWTC | 3 cut(s) | 146, 250, 383 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| PpuMI | RGGWCCY | 1 cut(s) | 111 |
| PscI | ACATGT | 1 cut(s) | 6 |
| Psp5II | RGGWCCY | 1 cut(s) | 111 |
| PspN4I | GGNNCC | 2 cut(s) | 180, 261 |
| PspPI | GGNCC | 1 cut(s) | 111 |
| PspPPI | RGGWCCY | 1 cut(s) | 111 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 341, 373 |
| PstI | CTGCAG | 1 cut(s) | 209 |
| PstNI | CAGNNNCTG | 1 cut(s) | 226 |
| RsaI | GTAC | 1 cut(s) | 350 |
| RsaNI | GTAC | 1 cut(s) | 349 |
| RseI | CAYNNNNRTG | 3 cut(s) | 21, 165, 176 |
| SaqAI | TTAA | 3 cut(s) | 128, 279, 329 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| Sau96I | GGNCC | 1 cut(s) | 111 |
| SchI | GAGTC | 1 cut(s) | 76 |
| ScrFI | CCNGG | 1 cut(s) | 183 |
| SetI | ASST | 5 cut(s) | 42, 77, 113, 127, 228 |
| SfaNI | GCATC | 1 cut(s) | 222 |
| SfcI | CTRYAG | 1 cut(s) | 205 |
| SinI | GGWCC | 1 cut(s) | 111 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 21, 165, 176 |
| Sse9I | AATT | 5 cut(s) | 103, 273, 286, 330, 344 |
| StyD4I | CCNGG | 1 cut(s) | 181 |
| TaqI | TCGA | 2 cut(s) | 121, 271 |
| TasI | AATT | 5 cut(s) | 103, 273, 286, 330, 344 |
| TatI | WGTACW | 1 cut(s) | 348 |
| TfiI | GAWTC | 3 cut(s) | 146, 250, 383 |
| Tru1I | TTAA | 3 cut(s) | 128, 279, 329 |
| Tru9I | TTAA | 3 cut(s) | 128, 279, 329 |
| TspDTI | ATGAA | 7 cut(s) | 5, 33, 39, 116, 149, 178, 349 |
| VpaK11BI | GGWCC | 1 cut(s) | 111 |
| XapI | RAATTY | 2 cut(s) | 103, 286 |
| XceI | RCATGY | 1 cut(s) | 10 |