Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 37 | 8.8e-06 | PPR repeat |
| PPR_long | PF17177 | 22 - 144 | 8.3e-07 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 30 - 139 | 1.3e-07 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 32 - 87 | 1.4e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 44 - 92 | 1.2e-18 | PPR repeat family |
| PPR_1 | PF12854 | 44 - 68 | 6.4e-09 | PPR repeat |
| PPR | PF01535 | 46 - 76 | 8.9e-06 | PPR repeat |
| TPR_24 | PF23276 | 57 - 160 | 7.7e-08 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 69 - 126 | 3.5e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 74 - 107 | 6.2e-13 | PPR repeat |
| PPR | PF01535 | 82 - 111 | 4.1e-09 | PPR repeat |
| PPR_2 | PF13041 | 87 - 125 | 7.1e-10 | PPR repeat family |
| PPR_1 | PF12854 | 109 - 142 | 1.3e-06 | PPR repeat |
| PPR_2 | PF13041 | 117 - 162 | 5.5e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 491 |
| AcoI | YGGCCR | 1 cut(s) | 13 |
| AcsI | RAATTY | 1 cut(s) | 119 |
| AfaI | GTAC | 2 cut(s) | 82, 228 |
| AgsI | TTSAA | 4 cut(s) | 32, 158, 416, 520 |
| AjnI | CCWGG | 1 cut(s) | 366 |
| AluBI | AGCT | 1 cut(s) | 173 |
| AluI | AGCT | 1 cut(s) | 173 |
| AlwI | GGATC | 1 cut(s) | 491 |
| AoxI | GGCC | 2 cut(s) | 13, 55 |
| ApoI | RAATTY | 1 cut(s) | 119 |
| AspS9I | GGNCC | 1 cut(s) | 348 |
| AvaII | GGWCC | 1 cut(s) | 348 |
| BalI | TGGCCA | 1 cut(s) | 15 |
| BccI | CCATC | 2 cut(s) | 47, 100 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 103, 137 |
| BciT130I | CCWGG | 1 cut(s) | 368 |
| BfaI | CTAG | 1 cut(s) | 128 |
| BfmI | CTRYAG | 1 cut(s) | 441 |
| Bme1390I | CCNGG | 1 cut(s) | 368 |
| Bme18I | GGWCC | 1 cut(s) | 348 |
| BmgT120I | GGNCC | 1 cut(s) | 348 |
| BmrFI | CCNGG | 1 cut(s) | 368 |
| BmsI | GCATC | 3 cut(s) | 401, 436, 458 |
| BsaJI | CCNNGG | 1 cut(s) | 367 |
| Bse1I | ACTGG | 1 cut(s) | 93 |
| BseBI | CCWGG | 1 cut(s) | 368 |
| BseDI | CCNNGG | 1 cut(s) | 367 |
| BseNI | ACTGG | 1 cut(s) | 93 |
| BseYI | CCCAGC | 1 cut(s) | 173 |
| BsgI | GTGCAG | 1 cut(s) | 187 |
| BshFI | GGCC | 2 cut(s) | 15, 57 |
| BslFI | GGGAC | 2 cut(s) | 279, 420 |
| BsmFI | GGGAC | 2 cut(s) | 279, 420 |
| BsnI | GGCC | 2 cut(s) | 15, 57 |
| Bsp1407I | TGTACA | 1 cut(s) | 80 |
| Bsp143I | GATC | 1 cut(s) | 496 |
| BspANI | GGCC | 2 cut(s) | 15, 57 |
| BspMAI | CTGCAG | 1 cut(s) | 445 |
| BspPI | GGATC | 1 cut(s) | 491 |
| BsrGI | TGTACA | 1 cut(s) | 80 |
| BsrI | ACTGG | 1 cut(s) | 93 |
| BssECI | CCNNGG | 1 cut(s) | 367 |
| BssMI | GATC | 1 cut(s) | 496 |
| Bst2UI | CCWGG | 1 cut(s) | 368 |
| Bst6I | CTCTTC | 1 cut(s) | 315 |
| BstAUI | TGTACA | 1 cut(s) | 80 |
| BstDEI | CTNAG | 3 cut(s) | 98, 308, 483 |
| BstKTI | GATC | 1 cut(s) | 499 |
| BstMBI | GATC | 1 cut(s) | 496 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 398 |
| BstNI | CCWGG | 1 cut(s) | 368 |
| BstSCI | CCNGG | 1 cut(s) | 366 |
| BstSFI | CTRYAG | 1 cut(s) | 441 |
| BstX2I | RGATCY | 1 cut(s) | 496 |
| BstYI | RGATCY | 1 cut(s) | 496 |
| BsuRI | GGCC | 2 cut(s) | 15, 57 |
| BtsIMutI | CAGTG | 1 cut(s) | 86 |
| Cfr13I | GGNCC | 1 cut(s) | 348 |
| Csp6I | GTAC | 2 cut(s) | 81, 227 |
| CviJI | RGCY | 8 cut(s) | 15, 57, 173, 232, 282, 330, 345, 401 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 57, 173, 232, 282, 330, 345, 401 |
| CviQI | GTAC | 2 cut(s) | 81, 227 |
| DdeI | CTNAG | 3 cut(s) | 98, 308, 483 |
| DpnI | GATC | 1 cut(s) | 498 |
| DpnII | GATC | 1 cut(s) | 496 |
| EaeI | YGGCCR | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 1 cut(s) | 315 |
| EarI | CTCTTC | 1 cut(s) | 315 |
| Eco47I | GGWCC | 1 cut(s) | 348 |
| EcoRII | CCWGG | 1 cut(s) | 366 |
| EcoT22I | ATGCAT | 1 cut(s) | 451 |
| FaiI | YATR | 7 cut(s) | 39, 47, 61, 247, 254, 354, 404 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 291, 323 |
| FaqI | GGGAC | 2 cut(s) | 279, 420 |
| FspBI | CTAG | 1 cut(s) | 128 |
| GsaI | CCCAGC | 1 cut(s) | 177 |
| HaeIII | GGCC | 2 cut(s) | 15, 57 |
| HinfI | GANTC | 3 cut(s) | 185, 259, 473 |
| Hpy188I | TCNGA | 1 cut(s) | 125 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 416, 427 |
| HpyAV | CCTTC | 2 cut(s) | 104, 152 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 168, 191, 443, 449 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 398 |
| HpyF3I | CTNAG | 3 cut(s) | 98, 308, 483 |
| Kzo9I | GATC | 1 cut(s) | 496 |
| LweI | GCATC | 3 cut(s) | 401, 436, 458 |
| MaeI | CTAG | 1 cut(s) | 128 |
| MaeIII | GTNAC | 2 cut(s) | 62, 434 |
| MalI | GATC | 1 cut(s) | 498 |
| MboI | GATC | 1 cut(s) | 496 |
| MboII | GAAGA | 2 cut(s) | 311, 332 |
| MflI | RGATCY | 1 cut(s) | 496 |
| MlsI | TGGCCA | 1 cut(s) | 15 |
| MluCI | AATT | 7 cut(s) | 74, 92, 119, 138, 360, 461, 468 |
| MluNI | TGGCCA | 1 cut(s) | 15 |
| MnlI | CCTC | 4 cut(s) | 272, 305, 382, 425 |
| Mox20I | TGGCCA | 1 cut(s) | 15 |
| Mph1103I | ATGCAT | 1 cut(s) | 451 |
| MscI | TGGCCA | 1 cut(s) | 15 |
| MseI | TTAA | 1 cut(s) | 287 |
| MslI | CAYNNNNRTG | 1 cut(s) | 254 |
| Msp20I | TGGCCA | 1 cut(s) | 15 |
| MspR9I | CCNGG | 1 cut(s) | 368 |
| MvaI | CCWGG | 1 cut(s) | 368 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 398 |
| NdeII | GATC | 1 cut(s) | 496 |
| NmuCI | GTSAC | 1 cut(s) | 434 |
| NsiI | ATGCAT | 1 cut(s) | 451 |
| PfeI | GAWTC | 3 cut(s) | 185, 259, 473 |
| Psp6I | CCWGG | 1 cut(s) | 366 |
| PspFI | CCCAGC | 1 cut(s) | 173 |
| PspGI | CCWGG | 1 cut(s) | 366 |
| PspPI | GGNCC | 1 cut(s) | 348 |
| PstI | CTGCAG | 1 cut(s) | 445 |
| PsuI | RGATCY | 1 cut(s) | 496 |
| RsaI | GTAC | 2 cut(s) | 82, 228 |
| RsaNI | GTAC | 2 cut(s) | 81, 227 |
| RseI | CAYNNNNRTG | 1 cut(s) | 254 |
| SaqAI | TTAA | 1 cut(s) | 287 |
| Sau3AI | GATC | 1 cut(s) | 496 |
| Sau96I | GGNCC | 1 cut(s) | 348 |
| ScrFI | CCNGG | 1 cut(s) | 368 |
| SetI | ASST | 5 cut(s) | 10, 163, 175, 353, 436 |
| SfaNI | GCATC | 3 cut(s) | 401, 436, 458 |
| SfcI | CTRYAG | 1 cut(s) | 441 |
| SinI | GGWCC | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 254 |
| Sse9I | AATT | 7 cut(s) | 74, 92, 119, 138, 360, 461, 468 |
| SspMI | CTAG | 1 cut(s) | 128 |
| StyD4I | CCNGG | 1 cut(s) | 366 |
| TaqI | TCGA | 1 cut(s) | 426 |
| TasI | AATT | 7 cut(s) | 74, 92, 119, 138, 360, 461, 468 |
| TatI | WGTACW | 2 cut(s) | 80, 226 |
| TfiI | GAWTC | 3 cut(s) | 185, 259, 473 |
| Tru1I | TTAA | 1 cut(s) | 287 |
| Tru9I | TTAA | 1 cut(s) | 287 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TseFI | GTSAC | 1 cut(s) | 434 |
| Tsp45I | GTSAC | 1 cut(s) | 434 |
| TspRI | CASTG | 1 cut(s) | 93 |
| VpaK11BI | GGWCC | 1 cut(s) | 348 |
| XapI | RAATTY | 1 cut(s) | 119 |
| XspI | CTAG | 1 cut(s) | 128 |
| Zsp2I | ATGCAT | 1 cut(s) | 451 |