Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 96 - 142 | 3.7e-12 | PPR repeat family |
| PPR | PF01535 | 97 - 126 | 1.1e-06 | PPR repeat |
| TPR_24 | PF23276 | 98 - 191 | 3.7e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 98 - 122 | 7.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 126 - 158 | 5.3e-07 | PPR repeat |
| PPR | PF01535 | 132 - 161 | 7.6e-06 | PPR repeat |
| PPR_1 | PF12854 | 161 - 191 | 1.6e-06 | PPR repeat |
| PPR_2 | PF13041 | 165 - 211 | 3.8e-14 | PPR repeat family |
| PPR | PF01535 | 168 - 191 | 8.1e-06 | PPR repeat |
| PPR_long | PF17177 | 180 - 312 | 4.2e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 196 - 228 | 1.2e-11 | PPR repeat |
| PPR_2 | PF13041 | 199 - 248 | 1.7e-18 | PPR repeat family |
| TPR_24 | PF23276 | 201 - 295 | 2.1e-09 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 202 - 231 | 2.4e-08 | PPR repeat |
| PPR_1 | PF12854 | 231 - 261 | 7.1e-07 | PPR repeat |
| PPR_3 | PF13812 | 258 - 313 | 5.6e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 267 - 294 | 1.7e-09 | PPR repeat |
| PPR_2 | PF13041 | 270 - 318 | 2.3e-16 | PPR repeat family |
| PPR_1 | PF12854 | 302 - 333 | 5.4e-09 | PPR repeat |
| PPR | PF01535 | 308 - 337 | 5e-07 | PPR repeat |
| PPR_2 | PF13041 | 317 - 352 | 1.1e-07 | PPR repeat family |
| PPR_1 | PF12854 | 335 - 368 | 8e-06 | PPR repeat |
| PPR_2 | PF13041 | 343 - 384 | 1.3e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 612, 717 |
| AccI | GTMKAC | 1 cut(s) | 46 |
| AccII | CGCG | 2 cut(s) | 7, 690 |
| AciI | CCGC | 1 cut(s) | 690 |
| AclWI | GGATC | 1 cut(s) | 1169 |
| AcoI | YGGCCR | 1 cut(s) | 691 |
| AcsI | RAATTY | 1 cut(s) | 664 |
| AgsI | TTSAA | 8 cut(s) | 190, 245, 280, 298, 371, 710, 836, 1094 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1131, 1163 |
| AluBI | AGCT | 2 cut(s) | 818, 851 |
| AluI | AGCT | 2 cut(s) | 818, 851 |
| Alw26I | GTCTC | 1 cut(s) | 1061 |
| AlwI | GGATC | 1 cut(s) | 1169 |
| AoxI | GGCC | 3 cut(s) | 552, 691, 733 |
| ApeKI | GCWGC | 2 cut(s) | 24, 792 |
| ApoI | RAATTY | 1 cut(s) | 664 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 227, 240, 576, 591, 1112 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| BanII | GRGCYC | 1 cut(s) | 485 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 37, 69 |
| BauI | CACGAG | 1 cut(s) | 72 |
| BbsI | GAAGAC | 1 cut(s) | 871 |
| BbvI | GCAGC | 2 cut(s) | 36, 804 |
| BccI | CCATC | 4 cut(s) | 92, 433, 620, 725 |
| BceAI | ACGGC | 1 cut(s) | 203 |
| BclI | TGATCA | 1 cut(s) | 1053 |
| BcoDI | GTCTC | 1 cut(s) | 1061 |
| BfaI | CTAG | 3 cut(s) | 39, 767, 806 |
| BfmI | CTRYAG | 3 cut(s) | 138, 759, 1119 |
| BglII | AGATCT | 2 cut(s) | 703, 979 |
| BisI | GCNGC | 3 cut(s) | 25, 691, 793 |
| BlsI | GCNGC | 3 cut(s) | 26, 692, 794 |
| BmiI | GGNNCC | 1 cut(s) | 484 |
| BmsI | GCATC | 6 cut(s) | 205, 301, 669, 947, 1114, 1136 |
| BpiI | GAAGAC | 1 cut(s) | 871 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 157, 189, 866, 898 |
| Bsa29I | ATCGAT | 1 cut(s) | 624 |
| BsaAI | YACGTR | 1 cut(s) | 968 |
| BsaJI | CCNNGG | 2 cut(s) | 486, 1045 |
| BseCI | ATCGAT | 1 cut(s) | 624 |
| BseDI | CCNNGG | 2 cut(s) | 486, 1045 |
| BseGI | GGATG | 2 cut(s) | 220, 962 |
| BseMII | CTCAG | 1 cut(s) | 666 |
| BseRI | GAGGAG | 1 cut(s) | 458 |
| BseXI | GCAGC | 2 cut(s) | 36, 804 |
| BseYI | CCCAGC | 1 cut(s) | 851 |
| Bsh1236I | CGCG | 2 cut(s) | 7, 690 |
| BshFI | GGCC | 3 cut(s) | 554, 693, 735 |
| BshVI | ATCGAT | 1 cut(s) | 624 |
| BslFI | GGGAC | 1 cut(s) | 1098 |
| BsmAI | GTCTC | 1 cut(s) | 1061 |
| BsmFI | GGGAC | 1 cut(s) | 1098 |
| BsnI | GGCC | 3 cut(s) | 554, 693, 735 |
| Bsp1286I | GDGCHC | 1 cut(s) | 485 |
| Bsp143I | GATC | 5 cut(s) | 463, 703, 979, 1053, 1174 |
| Bsp19I | CCATGG | 1 cut(s) | 486 |
| BspACI | CCGC | 1 cut(s) | 690 |
| BspANI | GGCC | 3 cut(s) | 554, 693, 735 |
| BspCNI | CTCAG | 1 cut(s) | 667 |
| BspDI | ATCGAT | 1 cut(s) | 624 |
| BspFNI | CGCG | 2 cut(s) | 7, 690 |
| BspHI | TCATGA | 1 cut(s) | 1205 |
| BspLI | GGNNCC | 1 cut(s) | 484 |
| BspMAI | CTGCAG | 1 cut(s) | 1123 |
| BspPI | GGATC | 1 cut(s) | 1169 |
| BssECI | CCNNGG | 2 cut(s) | 486, 1045 |
| BssMI | GATC | 5 cut(s) | 463, 703, 979, 1053, 1174 |
| BssNAI | GTATAC | 1 cut(s) | 47 |
| BssSI | CACGAG | 1 cut(s) | 72 |
| BssT1I | CCWWGG | 1 cut(s) | 486 |
| Bst1107I | GTATAC | 1 cut(s) | 47 |
| Bst2BI | CACGAG | 1 cut(s) | 72 |
| Bst4CI | ACNGT | 2 cut(s) | 404, 425 |
| Bst6I | CTCTTC | 1 cut(s) | 429 |
| BstBAI | YACGTR | 1 cut(s) | 968 |
| BstDEI | CTNAG | 4 cut(s) | 675, 776, 986, 1161 |
| BstDSI | CCRYGG | 1 cut(s) | 486 |
| BstF5I | GGATG | 2 cut(s) | 220, 962 |
| BstFNI | CGCG | 2 cut(s) | 7, 690 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 5 cut(s) | 466, 706, 982, 1056, 1177 |
| BstMAI | GTCTC | 1 cut(s) | 1061 |
| BstMBI | GATC | 5 cut(s) | 463, 703, 979, 1053, 1174 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 33, 77, 247, 256 |
| BstSFI | CTRYAG | 3 cut(s) | 138, 759, 1119 |
| BstUI | CGCG | 2 cut(s) | 7, 690 |
| BstV1I | GCAGC | 2 cut(s) | 36, 804 |
| BstV2I | GAAGAC | 1 cut(s) | 871 |
| BstX2I | RGATCY | 3 cut(s) | 703, 979, 1174 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 352 |
| BstYI | RGATCY | 3 cut(s) | 703, 979, 1174 |
| BstZ17I | GTATAC | 1 cut(s) | 47 |
| Bsu15I | ATCGAT | 1 cut(s) | 624 |
| BsuRI | GGCC | 3 cut(s) | 554, 693, 735 |
| BsuTUI | ATCGAT | 1 cut(s) | 624 |
| BtgI | CCRYGG | 1 cut(s) | 486 |
| BtsCI | GGATG | 2 cut(s) | 220, 962 |
| CciI | TCATGA | 1 cut(s) | 1205 |
| CfoI | GCGC | 1 cut(s) | 9 |
| ClaI | ATCGAT | 1 cut(s) | 624 |
| CseI | GACGC | 3 cut(s) | 13, 16, 239 |
| CviAII | CATG | 4 cut(s) | 97, 487, 1074, 1206 |
| DdeI | CTNAG | 4 cut(s) | 675, 776, 986, 1161 |
| DpnI | GATC | 5 cut(s) | 465, 705, 981, 1055, 1176 |
| DpnII | GATC | 5 cut(s) | 463, 703, 979, 1053, 1174 |
| EaeI | YGGCCR | 1 cut(s) | 691 |
| Eam1104I | CTCTTC | 1 cut(s) | 429 |
| EarI | CTCTTC | 1 cut(s) | 429 |
| Eco130I | CCWWGG | 1 cut(s) | 486 |
| Eco24I | GRGCYC | 1 cut(s) | 485 |
| EcoT14I | CCWWGG | 1 cut(s) | 486 |
| EcoT22I | ATGCAT | 1 cut(s) | 1129 |
| EcoT38I | GRGCYC | 1 cut(s) | 485 |
| ErhI | CCWWGG | 1 cut(s) | 486 |
| FaeI | CATG | 4 cut(s) | 100, 490, 1077, 1209 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 969, 1001 |
| FaqI | GGGAC | 1 cut(s) | 1098 |
| FatI | CATG | 4 cut(s) | 96, 486, 1073, 1205 |
| FbaI | TGATCA | 1 cut(s) | 1053 |
| FblI | GTMKAC | 1 cut(s) | 46 |
| Fnu4HI | GCNGC | 3 cut(s) | 25, 691, 793 |
| FokI | GGATG | 2 cut(s) | 227, 969 |
| FriOI | GRGCYC | 1 cut(s) | 485 |
| Fsp4HI | GCNGC | 3 cut(s) | 25, 691, 793 |
| FspBI | CTAG | 3 cut(s) | 39, 767, 806 |
| GlaI | GCGC | 1 cut(s) | 8 |
| GluI | GCNGC | 3 cut(s) | 25, 691, 793 |
| GsaI | CCCAGC | 1 cut(s) | 855 |
| HaeIII | GGCC | 3 cut(s) | 554, 693, 735 |
| HgaI | GACGC | 3 cut(s) | 13, 16, 239 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1II | CATG | 4 cut(s) | 100, 490, 1077, 1209 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HincII | GTYRAC | 1 cut(s) | 31 |
| HindII | GTYRAC | 1 cut(s) | 31 |
| HinfI | GANTC | 3 cut(s) | 367, 863, 1202 |
| Hpy166II | GTNNAC | 2 cut(s) | 31, 47 |
| Hpy188I | TCNGA | 3 cut(s) | 501, 676, 1046 |
| Hpy188III | TCNNGA | 5 cut(s) | 569, 596, 701, 1094, 1206 |
| Hpy8I | GTNNAC | 2 cut(s) | 31, 47 |
| HpyAV | CCTTC | 7 cut(s) | 68, 217, 270, 304, 782, 830, 1102 |
| HpyCH4III | ACNGT | 2 cut(s) | 404, 425 |
| HpyCH4IV | ACGT | 1 cut(s) | 967 |
| HpyCH4V | TGCA | 7 cut(s) | 24, 314, 682, 846, 869, 1121, 1127 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 33, 77, 247, 256 |
| HpyF3I | CTNAG | 4 cut(s) | 675, 776, 986, 1161 |
| HpySE526I | ACGT | 1 cut(s) | 967 |
| Hsp92II | CATG | 4 cut(s) | 100, 490, 1077, 1209 |
| HspAI | GCGC | 1 cut(s) | 7 |
| Ksp22I | TGATCA | 1 cut(s) | 1053 |
| Kzo9I | GATC | 5 cut(s) | 463, 703, 979, 1053, 1174 |
| LmnI | GCTCC | 1 cut(s) | 488 |
| Lsp1109I | GCAGC | 2 cut(s) | 36, 804 |
| LweI | GCATC | 6 cut(s) | 205, 301, 669, 947, 1114, 1136 |
| MaeI | CTAG | 3 cut(s) | 39, 767, 806 |
| MaeII | ACGT | 1 cut(s) | 967 |
| MaeIII | GTNAC | 2 cut(s) | 419, 506 |
| MalI | GATC | 5 cut(s) | 465, 705, 981, 1055, 1176 |
| MboI | GATC | 5 cut(s) | 463, 703, 979, 1053, 1174 |
| MboII | GAAGA | 6 cut(s) | 45, 255, 446, 698, 871, 989 |
| MflI | RGATCY | 3 cut(s) | 703, 979, 1174 |
| MhlI | GDGCHC | 1 cut(s) | 485 |
| MluCI | AATT | 7 cut(s) | 91, 664, 770, 1038, 1089, 1139, 1146 |
| MmeI | TCCRAC | 1 cut(s) | 780 |
| Mph1103I | ATGCAT | 1 cut(s) | 1129 |
| MroXI | GAANNNNTTC | 5 cut(s) | 227, 240, 576, 591, 1112 |
| MseI | TTAA | 2 cut(s) | 492, 1196 |
| MvnI | CGCG | 2 cut(s) | 7, 690 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 33, 77, 247, 256 |
| NcoI | CCATGG | 1 cut(s) | 486 |
| NdeII | GATC | 5 cut(s) | 463, 703, 979, 1053, 1174 |
| NlaIII | CATG | 4 cut(s) | 100, 490, 1077, 1209 |
| NlaIV | GGNNCC | 1 cut(s) | 484 |
| NsiI | ATGCAT | 1 cut(s) | 1129 |
| PagI | TCATGA | 1 cut(s) | 1205 |
| PdmI | GAANNNNTTC | 5 cut(s) | 227, 240, 576, 591, 1112 |
| PfeI | GAWTC | 3 cut(s) | 367, 863, 1202 |
| PkrI | GCNGC | 3 cut(s) | 26, 692, 794 |
| Ppu21I | YACGTR | 1 cut(s) | 968 |
| PsiI | TTATAA | 2 cut(s) | 612, 717 |
| PspFI | CCCAGC | 1 cut(s) | 851 |
| PspN4I | GGNNCC | 1 cut(s) | 484 |
| PstI | CTGCAG | 1 cut(s) | 1123 |
| PsuI | RGATCY | 3 cut(s) | 703, 979, 1174 |
| SaqAI | TTAA | 2 cut(s) | 492, 1196 |
| SatI | GCNGC | 3 cut(s) | 25, 691, 793 |
| Sau3AI | GATC | 5 cut(s) | 463, 703, 979, 1053, 1174 |
| SduI | GDGCHC | 1 cut(s) | 485 |
| SfaNI | GCATC | 6 cut(s) | 205, 301, 669, 947, 1114, 1136 |
| SfcI | CTRYAG | 3 cut(s) | 138, 759, 1119 |
| Sse9I | AATT | 7 cut(s) | 91, 664, 770, 1038, 1089, 1139, 1146 |
| SsiI | CCGC | 1 cut(s) | 690 |
| SspI | AATATT | 3 cut(s) | 721, 826, 931 |
| SspMI | CTAG | 3 cut(s) | 39, 767, 806 |
| StyI | CCWWGG | 1 cut(s) | 486 |
| TaaI | ACNGT | 2 cut(s) | 404, 425 |
| TaiI | ACGT | 1 cut(s) | 970 |
| TaqI | TCGA | 2 cut(s) | 231, 624 |
| TasI | AATT | 7 cut(s) | 91, 664, 770, 1038, 1089, 1139, 1146 |
| TauI | GCSGC | 1 cut(s) | 693 |
| TfiI | GAWTC | 3 cut(s) | 367, 863, 1202 |
| Tru1I | TTAA | 2 cut(s) | 492, 1196 |
| Tru9I | TTAA | 2 cut(s) | 492, 1196 |
| TseI | GCWGC | 2 cut(s) | 24, 792 |
| TspDTI | ATGAA | 4 cut(s) | 85, 98, 249, 1194 |
| XapI | RAATTY | 1 cut(s) | 664 |
| XmiI | GTMKAC | 1 cut(s) | 46 |
| XmnI | GAANNNNTTC | 5 cut(s) | 227, 240, 576, 591, 1112 |
| XspI | CTAG | 3 cut(s) | 39, 767, 806 |
| Zsp2I | ATGCAT | 1 cut(s) | 1129 |