endonuclease activity
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 481 |
| AccII | CGCG | 1 cut(s) | 396 |
| AciI | CCGC | 3 cut(s) | 52, 81, 754 |
| AclWI | GGATC | 1 cut(s) | 1793 |
| AcoI | YGGCCR | 3 cut(s) | 3, 1209, 1711 |
| AcsI | RAATTY | 3 cut(s) | 464, 860, 1102 |
| AcuI | CTGAAG | 5 cut(s) | 234, 267, 1066, 1094, 1176 |
| AcyI | GRCGYC | 1 cut(s) | 1888 |
| AdeI | CACNNNGTG | 1 cut(s) | 1594 |
| AfaI | GTAC | 3 cut(s) | 787, 1612, 1637 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 934, 1607 |
| AflIII | ACRYGT | 1 cut(s) | 1273 |
| AgsI | TTSAA | 4 cut(s) | 123, 866, 1319, 1342 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 232 |
| AjnI | CCWGG | 2 cut(s) | 470, 498 |
| AleI | CACNNNNGTG | 2 cut(s) | 1075, 1402 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1229, 1261 |
| AluBI | AGCT | 8 cut(s) | 223, 591, 900, 1086, 1116, 1787, 1796, 1915 |
| AluI | AGCT | 8 cut(s) | 223, 591, 900, 1086, 1116, 1787, 1796, 1915 |
| Alw21I | GWGCWC | 1 cut(s) | 884 |
| Alw26I | GTCTC | 2 cut(s) | 417, 1864 |
| AlwI | GGATC | 1 cut(s) | 1793 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 257 |
| AoxI | GGCC | 6 cut(s) | 3, 112, 1209, 1406, 1711, 1927 |
| ApeKI | GCWGC | 4 cut(s) | 54, 938, 1311, 1853 |
| ApoI | RAATTY | 3 cut(s) | 464, 860, 1102 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 280, 1079, 1398 |
| AspLEI | GCGC | 1 cut(s) | 396 |
| AspS9I | GGNCC | 2 cut(s) | 1520, 1950 |
| AsuHPI | GGTGA | 4 cut(s) | 831, 975, 1008, 1577 |
| AvaII | GGWCC | 2 cut(s) | 1520, 1950 |
| BalI | TGGCCA | 1 cut(s) | 1211 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 778, 810 |
| BauI | CACGAG | 1 cut(s) | 315 |
| BbsI | GAAGAC | 1 cut(s) | 2028 |
| Bbv12I | GWGCWC | 1 cut(s) | 884 |
| BbvI | GCAGC | 4 cut(s) | 66, 925, 1298, 1840 |
| BccI | CCATC | 5 cut(s) | 625, 744, 1175, 1290, 1900 |
| BciT130I | CCWGG | 2 cut(s) | 472, 500 |
| BciVI | GTATCC | 1 cut(s) | 1613 |
| BcoDI | GTCTC | 2 cut(s) | 417, 1864 |
| BfaI | CTAG | 6 cut(s) | 224, 525, 542, 806, 1556, 1793 |
| BfmI | CTRYAG | 2 cut(s) | 717, 1835 |
| BfuAI | ACCTGC | 1 cut(s) | 481 |
| BfuI | GTATCC | 1 cut(s) | 1613 |
| BisI | GCNGC | 4 cut(s) | 55, 939, 1312, 1854 |
| BlsI | GCNGC | 4 cut(s) | 56, 940, 1313, 1855 |
| BmcAI | AGTACT | 1 cut(s) | 1637 |
| Bme1390I | CCNGG | 2 cut(s) | 472, 500 |
| Bme18I | GGWCC | 2 cut(s) | 1520, 1950 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 232 |
| BmgT120I | GGNCC | 2 cut(s) | 1520, 1950 |
| BmrFI | CCNGG | 2 cut(s) | 472, 500 |
| BmrI | ACTGGG | 1 cut(s) | 1268 |
| BmsI | GCATC | 2 cut(s) | 1376, 1813 |
| BmuI | ACTGGG | 1 cut(s) | 1268 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1876 |
| BpiI | GAAGAC | 1 cut(s) | 2028 |
| BpmI | CTGGAG | 1 cut(s) | 521 |
| BpuEI | CTTGAG | 2 cut(s) | 21, 577 |
| Bsa29I | ATCGAT | 1 cut(s) | 1895 |
| BsaHI | GRCGYC | 1 cut(s) | 1888 |
| BsaJI | CCNNGG | 5 cut(s) | 749, 842, 1212, 1403, 1995 |
| BsaWI | WCCGGW | 1 cut(s) | 1476 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 175, 205 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 934, 1607 |
| Bse118I | RCCGGY | 2 cut(s) | 5, 134 |
| Bse1I | ACTGG | 4 cut(s) | 898, 1263, 1714, 1812 |
| Bse3DI | GCAATG | 2 cut(s) | 1191, 1764 |
| BseBI | CCWGG | 2 cut(s) | 472, 500 |
| BseCI | ATCGAT | 1 cut(s) | 1895 |
| BseDI | CCNNGG | 5 cut(s) | 749, 842, 1212, 1403, 1995 |
| BseGI | GGATG | 6 cut(s) | 337, 617, 788, 1282, 1663, 1990 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 934, 1607 |
| BseMI | GCAATG | 2 cut(s) | 1191, 1764 |
| BseMII | CTCAG | 4 cut(s) | 32, 890, 1929, 1986 |
| BseNI | ACTGG | 4 cut(s) | 898, 1263, 1714, 1812 |
| BseRI | GAGGAG | 1 cut(s) | 395 |
| BseXI | GCAGC | 4 cut(s) | 66, 925, 1298, 1840 |
| BseYI | CCCAGC | 1 cut(s) | 130 |
| Bsh1236I | CGCG | 1 cut(s) | 396 |
| BshFI | GGCC | 6 cut(s) | 5, 114, 1211, 1408, 1713, 1929 |
| BshVI | ATCGAT | 1 cut(s) | 1895 |
| BsiHKAI | GWGCWC | 1 cut(s) | 884 |
| BsiSI | CCGG | 3 cut(s) | 6, 135, 1477 |
| BslFI | GGGAC | 4 cut(s) | 239, 910, 920, 1793 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 934, 1607 |
| BsmAI | GTCTC | 2 cut(s) | 417, 1864 |
| BsmFI | GGGAC | 4 cut(s) | 239, 910, 920, 1793 |
| BsnI | GGCC | 6 cut(s) | 5, 114, 1211, 1408, 1713, 1929 |
| Bsp1286I | GDGCHC | 1 cut(s) | 884 |
| Bsp143I | GATC | 5 cut(s) | 98, 171, 945, 1095, 1798 |
| Bsp19I | CCATGG | 2 cut(s) | 749, 1995 |
| BspACI | CCGC | 3 cut(s) | 52, 81, 754 |
| BspANI | GGCC | 6 cut(s) | 5, 114, 1211, 1408, 1713, 1929 |
| BspCNI | CTCAG | 4 cut(s) | 31, 889, 1930, 1985 |
| BspDI | ATCGAT | 1 cut(s) | 1895 |
| BspFNI | CGCG | 1 cut(s) | 396 |
| BspHI | TCATGA | 2 cut(s) | 948, 1098 |
| BspMAI | CTGCAG | 1 cut(s) | 721 |
| BspMI | ACCTGC | 1 cut(s) | 481 |
| BspPI | GGATC | 1 cut(s) | 1793 |
| BsrDI | GCAATG | 2 cut(s) | 1191, 1764 |
| BsrFI | RCCGGY | 2 cut(s) | 5, 134 |
| BsrI | ACTGG | 4 cut(s) | 898, 1263, 1714, 1812 |
| BssAI | RCCGGY | 2 cut(s) | 5, 134 |
| BssECI | CCNNGG | 5 cut(s) | 749, 842, 1212, 1403, 1995 |
| BssMI | GATC | 5 cut(s) | 98, 171, 945, 1095, 1798 |
| BssNI | GRCGYC | 1 cut(s) | 1888 |
| BssSI | CACGAG | 1 cut(s) | 315 |
| BssT1I | CCWWGG | 4 cut(s) | 749, 842, 1212, 1995 |
| Bst2BI | CACGAG | 1 cut(s) | 315 |
| Bst2UI | CCWGG | 2 cut(s) | 472, 500 |
| Bst4CI | ACNGT | 4 cut(s) | 205, 230, 306, 924 |
| Bst6I | CTCTTC | 3 cut(s) | 286, 529, 799 |
| BstACI | GRCGYC | 1 cut(s) | 1888 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1456 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 43 |
| BstDEI | CTNAG | 6 cut(s) | 18, 261, 876, 1624, 1938, 1972 |
| BstDSI | CCRYGG | 3 cut(s) | 749, 1403, 1995 |
| BstF5I | GGATG | 6 cut(s) | 337, 617, 788, 1282, 1663, 1990 |
| BstFNI | CGCG | 1 cut(s) | 396 |
| BstHHI | GCGC | 1 cut(s) | 396 |
| BstKTI | GATC | 5 cut(s) | 101, 174, 948, 1098, 1801 |
| BstMAI | GTCTC | 2 cut(s) | 417, 1864 |
| BstMBI | GATC | 5 cut(s) | 98, 171, 945, 1095, 1798 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 51, 1456, 1793 |
| BstNI | CCWGG | 2 cut(s) | 472, 500 |
| BstNSI | RCATGY | 2 cut(s) | 647, 1277 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1876 |
| BstSCI | CCNGG | 2 cut(s) | 470, 498 |
| BstSFI | CTRYAG | 2 cut(s) | 717, 1835 |
| BstUI | CGCG | 1 cut(s) | 396 |
| BstV1I | GCAGC | 4 cut(s) | 66, 925, 1298, 1840 |
| BstV2I | GAAGAC | 1 cut(s) | 2028 |
| Bsu15I | ATCGAT | 1 cut(s) | 1895 |
| BsuI | GTATCC | 1 cut(s) | 1613 |
| BsuRI | GGCC | 6 cut(s) | 5, 114, 1211, 1408, 1713, 1929 |
| BsuTUI | ATCGAT | 1 cut(s) | 1895 |
| BtgI | CCRYGG | 3 cut(s) | 749, 1403, 1995 |
| BtsCI | GGATG | 6 cut(s) | 337, 617, 788, 1282, 1663, 1990 |
| BtsIMutI | CAGTG | 2 cut(s) | 1070, 1347 |
| BveI | ACCTGC | 1 cut(s) | 481 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 43 |
| CaiI | CAGNNNCTG | 1 cut(s) | 257 |
| CciI | TCATGA | 2 cut(s) | 948, 1098 |
| CfoI | GCGC | 1 cut(s) | 396 |
| Cfr10I | RCCGGY | 2 cut(s) | 5, 134 |
| Cfr13I | GGNCC | 2 cut(s) | 1520, 1950 |
| ClaI | ATCGAT | 1 cut(s) | 1895 |
| CseI | GACGC | 1 cut(s) | 1877 |
| Csp6I | GTAC | 3 cut(s) | 786, 1611, 1636 |
| CviQI | GTAC | 3 cut(s) | 786, 1611, 1636 |
| DdeI | CTNAG | 6 cut(s) | 18, 261, 876, 1624, 1938, 1972 |
| DpnI | GATC | 5 cut(s) | 100, 173, 947, 1097, 1800 |
| DpnII | GATC | 5 cut(s) | 98, 171, 945, 1095, 1798 |
| DraIII | CACNNNGTG | 1 cut(s) | 1594 |
| DriI | GACNNNNNGTC | 1 cut(s) | 232 |
| EaeI | YGGCCR | 3 cut(s) | 3, 1209, 1711 |
| Eam1104I | CTCTTC | 3 cut(s) | 286, 529, 799 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 232 |
| EarI | CTCTTC | 3 cut(s) | 286, 529, 799 |
| EciI | GGCGGA | 1 cut(s) | 769 |
| Eco130I | CCWWGG | 4 cut(s) | 749, 842, 1212, 1995 |
| Eco47I | GGWCC | 2 cut(s) | 1520, 1950 |
| Eco57I | CTGAAG | 5 cut(s) | 234, 267, 1066, 1094, 1176 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1950 |
| EcoRI | GAATTC | 1 cut(s) | 1102 |
| EcoRII | CCWGG | 2 cut(s) | 470, 498 |
| EcoT14I | CCWWGG | 4 cut(s) | 749, 842, 1212, 1995 |
| EcoT22I | ATGCAT | 1 cut(s) | 1647 |
| ErhI | CCWWGG | 4 cut(s) | 749, 842, 1212, 1995 |
| FaqI | GGGAC | 4 cut(s) | 239, 910, 920, 1793 |
| Fnu4HI | GCNGC | 4 cut(s) | 55, 939, 1312, 1854 |
| FokI | GGATG | 6 cut(s) | 324, 604, 775, 1269, 1670, 1997 |
| Fsp4HI | GCNGC | 4 cut(s) | 55, 939, 1312, 1854 |
| FspBI | CTAG | 6 cut(s) | 224, 525, 542, 806, 1556, 1793 |
| GlaI | GCGC | 1 cut(s) | 395 |
| GluI | GCNGC | 4 cut(s) | 55, 939, 1312, 1854 |
| GsaI | CCCAGC | 1 cut(s) | 134 |
| GsuI | CTGGAG | 1 cut(s) | 521 |
| HaeIII | GGCC | 6 cut(s) | 5, 114, 1211, 1408, 1713, 1929 |
| HapII | CCGG | 3 cut(s) | 6, 135, 1477 |
| HgaI | GACGC | 1 cut(s) | 1877 |
| HhaI | GCGC | 1 cut(s) | 396 |
| Hin1I | GRCGYC | 1 cut(s) | 1888 |
| Hin6I | GCGC | 1 cut(s) | 394 |
| HinP1I | GCGC | 1 cut(s) | 394 |
| HincII | GTYRAC | 1 cut(s) | 157 |
| HindII | GTYRAC | 1 cut(s) | 157 |
| HpaII | CCGG | 3 cut(s) | 6, 135, 1477 |
| HphI | GGTGA | 4 cut(s) | 831, 975, 1008, 1577 |
| Hpy166II | GTNNAC | 3 cut(s) | 157, 496, 1016 |
| Hpy188III | TCNNGA | 7 cut(s) | 315, 548, 594, 949, 1099, 1490, 2018 |
| Hpy8I | GTNNAC | 3 cut(s) | 157, 496, 1016 |
| Hpy99I | CGWCG | 1 cut(s) | 1882 |
| HpyAV | CCTTC | 4 cut(s) | 258, 1077, 1523, 1754 |
| HpyCH4III | ACNGT | 4 cut(s) | 205, 230, 306, 924 |
| HpyCH4IV | ACGT | 1 cut(s) | 1877 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 51, 1456, 1793 |
| HpyF3I | CTNAG | 6 cut(s) | 18, 261, 876, 1624, 1938, 1972 |
| HpySE526I | ACGT | 1 cut(s) | 1877 |
| Hsp92I | GRCGYC | 1 cut(s) | 1888 |
| HspAI | GCGC | 1 cut(s) | 394 |
| KroI | GCCGGC | 1 cut(s) | 5 |
| KroNI | GCCGGC | 1 cut(s) | 7 |
| Kzo9I | GATC | 5 cut(s) | 98, 171, 945, 1095, 1798 |
| Lsp1109I | GCAGC | 4 cut(s) | 66, 925, 1298, 1840 |
| LweI | GCATC | 2 cut(s) | 1376, 1813 |
| MaeI | CTAG | 6 cut(s) | 224, 525, 542, 806, 1556, 1793 |
| MaeII | ACGT | 1 cut(s) | 1877 |
| MaeIII | GTNAC | 3 cut(s) | 403, 1490, 1705 |
| MalI | GATC | 5 cut(s) | 100, 173, 947, 1097, 1800 |
| MboI | GATC | 5 cut(s) | 98, 171, 945, 1095, 1798 |
| MboII | GAAGA | 9 cut(s) | 273, 400, 546, 569, 572, 786, 835, 1682, 2033 |
| MhlI | GDGCHC | 1 cut(s) | 884 |
| MlsI | TGGCCA | 1 cut(s) | 1211 |
| MluNI | TGGCCA | 1 cut(s) | 1211 |
| MlyI | GAGTC | 3 cut(s) | 716, 902, 1576 |
| MmeI | TCCRAC | 1 cut(s) | 1962 |
| Mox20I | TGGCCA | 1 cut(s) | 1211 |
| Mph1103I | ATGCAT | 1 cut(s) | 1647 |
| MroNI | GCCGGC | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 3 cut(s) | 280, 1079, 1398 |
| MscI | TGGCCA | 1 cut(s) | 1211 |
| MseI | TTAA | 1 cut(s) | 638 |
| MslI | CAYNNNNRTG | 3 cut(s) | 342, 1075, 1402 |
| Msp20I | TGGCCA | 1 cut(s) | 1211 |
| MspI | CCGG | 3 cut(s) | 6, 135, 1477 |
| MspR9I | CCNGG | 2 cut(s) | 472, 500 |
| MvaI | CCWGG | 2 cut(s) | 472, 500 |
| MvnI | CGCG | 1 cut(s) | 396 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 51, 1456, 1793 |
| NaeI | GCCGGC | 1 cut(s) | 7 |
| NcoI | CCATGG | 2 cut(s) | 749, 1995 |
| NdeII | GATC | 5 cut(s) | 98, 171, 945, 1095, 1798 |
| NgoMIV | GCCGGC | 1 cut(s) | 5 |
| NmeAIII | GCCGAG | 1 cut(s) | 890 |
| NmuCI | GTSAC | 1 cut(s) | 1490 |
| NsiI | ATGCAT | 1 cut(s) | 1647 |
| NspI | RCATGY | 2 cut(s) | 647, 1277 |
| OliI | CACNNNNGTG | 2 cut(s) | 1075, 1402 |
| PagI | TCATGA | 2 cut(s) | 948, 1098 |
| PciI | ACATGT | 1 cut(s) | 1273 |
| PdiI | GCCGGC | 1 cut(s) | 7 |
| PdmI | GAANNNNTTC | 3 cut(s) | 280, 1079, 1398 |
| PkrI | GCNGC | 4 cut(s) | 56, 940, 1313, 1855 |
| PleI | GAGTC | 3 cut(s) | 716, 902, 1576 |
| PpsI | GAGTC | 3 cut(s) | 716, 902, 1576 |
| PpuMI | RGGWCCY | 1 cut(s) | 1950 |
| PscI | ACATGT | 1 cut(s) | 1273 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1876 |
| Psp5II | RGGWCCY | 1 cut(s) | 1950 |
| Psp6I | CCWGG | 2 cut(s) | 470, 498 |
| PspFI | CCCAGC | 1 cut(s) | 130 |
| PspGI | CCWGG | 2 cut(s) | 470, 498 |
| PspPI | GGNCC | 2 cut(s) | 1520, 1950 |
| PspPPI | RGGWCCY | 1 cut(s) | 1950 |
| PstI | CTGCAG | 1 cut(s) | 721 |
| PstNI | CAGNNNCTG | 1 cut(s) | 257 |
| RsaI | GTAC | 3 cut(s) | 787, 1612, 1637 |
| RsaNI | GTAC | 3 cut(s) | 786, 1611, 1636 |
| RseI | CAYNNNNRTG | 3 cut(s) | 342, 1075, 1402 |
| SaqAI | TTAA | 1 cut(s) | 638 |
| SatI | GCNGC | 4 cut(s) | 55, 939, 1312, 1854 |
| Sau3AI | GATC | 5 cut(s) | 98, 171, 945, 1095, 1798 |
| Sau96I | GGNCC | 2 cut(s) | 1520, 1950 |
| ScaI | AGTACT | 1 cut(s) | 1637 |
| SchI | GAGTC | 3 cut(s) | 716, 902, 1576 |
| ScrFI | CCNGG | 2 cut(s) | 472, 500 |
| SduI | GDGCHC | 1 cut(s) | 884 |
| SfaNI | GCATC | 2 cut(s) | 1376, 1813 |
| SfcI | CTRYAG | 2 cut(s) | 717, 1835 |
| SinI | GGWCC | 2 cut(s) | 1520, 1950 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 342, 1075, 1402 |
| SmlI | CTYRAG | 2 cut(s) | 36, 592 |
| SmoI | CTYRAG | 2 cut(s) | 36, 592 |
| SsiI | CCGC | 3 cut(s) | 52, 81, 754 |
| SspI | AATATT | 1 cut(s) | 216 |
| SspMI | CTAG | 6 cut(s) | 224, 525, 542, 806, 1556, 1793 |
| StyD4I | CCNGG | 2 cut(s) | 470, 498 |
| StyI | CCWWGG | 4 cut(s) | 749, 842, 1212, 1995 |
| TaaI | ACNGT | 4 cut(s) | 205, 230, 306, 924 |
| TaiI | ACGT | 1 cut(s) | 1880 |
| TaqI | TCGA | 8 cut(s) | 72, 97, 109, 200, 725, 1141, 1725, 1895 |
| TatI | WGTACW | 2 cut(s) | 785, 1635 |
| Tru1I | TTAA | 1 cut(s) | 638 |
| Tru9I | TTAA | 1 cut(s) | 638 |
| TscAI | CASTG | 2 cut(s) | 1077, 1354 |
| TseFI | GTSAC | 1 cut(s) | 1490 |
| TseI | GCWGC | 4 cut(s) | 54, 938, 1311, 1853 |
| Tsp45I | GTSAC | 1 cut(s) | 1490 |
| TspDTI | ATGAA | 9 cut(s) | 309, 353, 873, 985, 1115, 1545, 1630, 1674, 1719 |
| TspGWI | ACGGA | 2 cut(s) | 1371, 1392 |
| TspRI | CASTG | 2 cut(s) | 1077, 1354 |
| VpaK11BI | GGWCC | 2 cut(s) | 1520, 1950 |
| XapI | RAATTY | 3 cut(s) | 464, 860, 1102 |
| XceI | RCATGY | 2 cut(s) | 647, 1277 |
| XmnI | GAANNNNTTC | 3 cut(s) | 280, 1079, 1398 |
| XspI | CTAG | 6 cut(s) | 224, 525, 542, 806, 1556, 1793 |
| ZrmI | AGTACT | 1 cut(s) | 1637 |
| Zsp2I | ATGCAT | 1 cut(s) | 1647 |