Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 3 - 55 | 4.5e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 4 - 37 | 5.6e-11 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 3.7e-19 | PPR repeat family |
| PPR | PF01535 | 11 - 41 | 4.2e-08 | PPR repeat |
| MRP-S27 | PF10037 | 12 - 75 | 2.5e-06 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 39 - 71 | 1.1e-09 | PPR repeat |
| PPR_2 | PF13041 | 43 - 91 | 2.9e-15 | PPR repeat family |
| TPR_24 | PF23276 | 60 - 175 | 1.5e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 75 - 106 | 9.4e-13 | PPR repeat |
| PPR_2 | PF13041 | 78 - 123 | 3.6e-12 | PPR repeat family |
| PPR | PF01535 | 81 - 109 | 2.2e-08 | PPR repeat |
| PPR_3 | PF13812 | 113 - 160 | 3.1e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 114 - 162 | 3.3e-17 | PPR repeat family |
| PPR | PF01535 | 117 - 144 | 1.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 145 - 177 | 2.6e-14 | PPR repeat |
| PPR_2 | PF13041 | 148 - 178 | 2.3e-09 | PPR repeat family |
| PPR | PF01535 | 151 - 178 | 7.1e-08 | PPR repeat |
| PPR_3 | PF13812 | 181 - 230 | 7.4e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 185 - 211 | 1.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 186 - 234 | 2e-16 | PPR repeat family |
| PPR_1 | PF12854 | 217 - 248 | 3.5e-10 | PPR repeat |
| PPR | PF01535 | 224 - 253 | 1.3e-07 | PPR repeat |
| PPR_2 | PF13041 | 238 - 268 | 1.6e-07 | PPR repeat family |
| PPR_1 | PF12854 | 251 - 284 | 2.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 258 - 303 | 3.6e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 459 |
| AccIII | TCCGGA | 1 cut(s) | 127 |
| AciI | CCGC | 2 cut(s) | 488, 705 |
| AclWI | GGATC | 2 cut(s) | 208, 917 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AfaI | GTAC | 1 cut(s) | 775 |
| AgsI | TTSAA | 9 cut(s) | 53, 100, 145, 206, 584, 611, 645, 719, 842 |
| AluBI | AGCT | 3 cut(s) | 86, 599, 929 |
| AluI | AGCT | 3 cut(s) | 86, 599, 929 |
| Alw26I | GTCTC | 1 cut(s) | 809 |
| AlwI | GGATC | 2 cut(s) | 208, 917 |
| Aor13HI | TCCGGA | 1 cut(s) | 127 |
| AoxI | GGCC | 2 cut(s) | 327, 706 |
| AseI | ATTAAT | 1 cut(s) | 687 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 423, 438, 515 |
| AsuC2I | CCSGG | 1 cut(s) | 407 |
| AsuHPI | GGTGA | 3 cut(s) | 121, 130, 560 |
| BbsI | GAAGAC | 2 cut(s) | 544, 633 |
| BccI | CCATC | 7 cut(s) | 257, 458, 527, 581, 695, 761, 850 |
| BciVI | GTATCC | 1 cut(s) | 365 |
| BclI | TGATCA | 1 cut(s) | 394 |
| BcnI | CCSGG | 1 cut(s) | 407 |
| BcoDI | GTCTC | 1 cut(s) | 809 |
| BfaI | CTAG | 1 cut(s) | 633 |
| BfmI | CTRYAG | 2 cut(s) | 618, 867 |
| BfuI | GTATCC | 1 cut(s) | 365 |
| BisI | GCNGC | 1 cut(s) | 706 |
| BlpI | GCTNAGC | 1 cut(s) | 320 |
| BlsI | GCNGC | 1 cut(s) | 707 |
| Bme1390I | CCNGG | 1 cut(s) | 407 |
| BmrFI | CCNGG | 1 cut(s) | 407 |
| BmsI | GCATC | 3 cut(s) | 516, 862, 884 |
| BpiI | GAAGAC | 2 cut(s) | 544, 633 |
| BpmI | CTGGAG | 1 cut(s) | 747 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 320 |
| BpuMI | CCSGG | 1 cut(s) | 407 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 1 cut(s) | 793 |
| BsaWI | WCCGGW | 1 cut(s) | 127 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 845, 875 |
| Bse3DI | GCAATG | 1 cut(s) | 15 |
| BseAI | TCCGGA | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 793 |
| BseGI | GGATG | 3 cut(s) | 136, 268, 295 |
| BseMI | GCAATG | 1 cut(s) | 15 |
| BseMII | CTCAG | 1 cut(s) | 536 |
| BseRI | GAGGAG | 1 cut(s) | 294 |
| BshFI | GGCC | 2 cut(s) | 329, 708 |
| BsiSI | CCGG | 2 cut(s) | 128, 406 |
| BslFI | GGGAC | 1 cut(s) | 846 |
| BsmAI | GTCTC | 1 cut(s) | 809 |
| BsmFI | GGGAC | 1 cut(s) | 846 |
| BsnI | GGCC | 2 cut(s) | 329, 708 |
| Bsp13I | TCCGGA | 1 cut(s) | 127 |
| Bsp143I | GATC | 4 cut(s) | 213, 310, 394, 922 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 320 |
| BspACI | CCGC | 2 cut(s) | 488, 705 |
| BspANI | GGCC | 2 cut(s) | 329, 708 |
| BspCNI | CTCAG | 1 cut(s) | 535 |
| BspEI | TCCGGA | 1 cut(s) | 127 |
| BspHI | TCATGA | 1 cut(s) | 210 |
| BspMAI | CTGCAG | 1 cut(s) | 871 |
| BspPI | GGATC | 2 cut(s) | 208, 917 |
| BsrDI | GCAATG | 1 cut(s) | 15 |
| BssECI | CCNNGG | 1 cut(s) | 793 |
| BssMI | GATC | 4 cut(s) | 213, 310, 394, 922 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 4 cut(s) | 272, 377, 476, 679 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 330 |
| BstC8I | GCNNGC | 1 cut(s) | 331 |
| BstDEI | CTNAG | 2 cut(s) | 320, 522 |
| BstF5I | GGATG | 3 cut(s) | 136, 268, 295 |
| BstKTI | GATC | 4 cut(s) | 216, 313, 397, 925 |
| BstMAI | GTCTC | 1 cut(s) | 809 |
| BstMBI | GATC | 4 cut(s) | 213, 310, 394, 922 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 330 |
| BstSCI | CCNGG | 1 cut(s) | 405 |
| BstSFI | CTRYAG | 2 cut(s) | 618, 867 |
| BstV2I | GAAGAC | 2 cut(s) | 544, 633 |
| BstX2I | RGATCY | 1 cut(s) | 922 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 922 |
| BsuI | GTATCC | 1 cut(s) | 365 |
| BsuRI | GGCC | 2 cut(s) | 329, 708 |
| BtsCI | GGATG | 3 cut(s) | 136, 268, 295 |
| BtsIMutI | CAGTG | 1 cut(s) | 80 |
| Cac8I | GCNNGC | 1 cut(s) | 331 |
| CciI | TCATGA | 1 cut(s) | 210 |
| CseI | GACGC | 1 cut(s) | 46 |
| Csp6I | GTAC | 1 cut(s) | 774 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 810, 845 |
| CviAII | CATG | 3 cut(s) | 211, 325, 334 |
| CviQI | GTAC | 1 cut(s) | 774 |
| DdeI | CTNAG | 2 cut(s) | 320, 522 |
| DpnI | GATC | 4 cut(s) | 215, 312, 396, 924 |
| DpnII | GATC | 4 cut(s) | 213, 310, 394, 922 |
| EcoT22I | ATGCAT | 1 cut(s) | 877 |
| FaeI | CATG | 3 cut(s) | 214, 328, 337 |
| FaqI | GGGAC | 1 cut(s) | 846 |
| FatI | CATG | 3 cut(s) | 210, 324, 333 |
| FauI | CCCGC | 1 cut(s) | 481 |
| FbaI | TGATCA | 1 cut(s) | 394 |
| Fnu4HI | GCNGC | 1 cut(s) | 706 |
| FokI | GGATG | 3 cut(s) | 143, 275, 302 |
| Fsp4HI | GCNGC | 1 cut(s) | 706 |
| FspBI | CTAG | 1 cut(s) | 633 |
| GluI | GCNGC | 1 cut(s) | 706 |
| GsuI | CTGGAG | 1 cut(s) | 747 |
| HaeIII | GGCC | 2 cut(s) | 329, 708 |
| HapII | CCGG | 2 cut(s) | 128, 406 |
| HgaI | GACGC | 1 cut(s) | 46 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin1II | CATG | 3 cut(s) | 214, 328, 337 |
| HinfI | GANTC | 3 cut(s) | 49, 611, 693 |
| HpaII | CCGG | 2 cut(s) | 128, 406 |
| HphI | GGTGA | 3 cut(s) | 121, 130, 560 |
| Hpy166II | GTNNAC | 1 cut(s) | 380 |
| Hpy188I | TCNGA | 2 cut(s) | 525, 794 |
| Hpy188III | TCNNGA | 5 cut(s) | 128, 211, 416, 764, 842 |
| Hpy8I | GTNNAC | 1 cut(s) | 380 |
| HpyAV | CCTTC | 2 cut(s) | 151, 578 |
| HpyCH4III | ACNGT | 4 cut(s) | 272, 377, 476, 679 |
| HpyCH4V | TGCA | 7 cut(s) | 63, 333, 506, 529, 594, 869, 875 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 330 |
| HpyF3I | CTNAG | 2 cut(s) | 320, 522 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| Hsp92II | CATG | 3 cut(s) | 214, 328, 337 |
| Kpn2I | TCCGGA | 1 cut(s) | 127 |
| Ksp22I | TGATCA | 1 cut(s) | 394 |
| Kzo9I | GATC | 4 cut(s) | 213, 310, 394, 922 |
| LmnI | GCTCC | 1 cut(s) | 25 |
| LweI | GCATC | 3 cut(s) | 516, 862, 884 |
| MaeI | CTAG | 1 cut(s) | 633 |
| MaeIII | GTNAC | 3 cut(s) | 31, 136, 353 |
| MalI | GATC | 4 cut(s) | 215, 312, 396, 924 |
| MboI | GATC | 4 cut(s) | 213, 310, 394, 922 |
| MboII | GAAGA | 3 cut(s) | 504, 549, 633 |
| MflI | RGATCY | 1 cut(s) | 922 |
| MluCI | AATT | 6 cut(s) | 250, 366, 564, 786, 887, 894 |
| MlyI | GAGTC | 1 cut(s) | 687 |
| MnlI | CCTC | 4 cut(s) | 166, 272, 660, 788 |
| Mph1103I | ATGCAT | 1 cut(s) | 877 |
| MroI | TCCGGA | 1 cut(s) | 127 |
| MroXI | GAANNNNTTC | 3 cut(s) | 423, 438, 515 |
| MseI | TTAA | 2 cut(s) | 687, 944 |
| MspI | CCGG | 2 cut(s) | 128, 406 |
| MspR9I | CCNGG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 330 |
| NciI | CCSGG | 1 cut(s) | 407 |
| NdeII | GATC | 4 cut(s) | 213, 310, 394, 922 |
| NlaIII | CATG | 3 cut(s) | 214, 328, 337 |
| NmuCI | GTSAC | 1 cut(s) | 136 |
| NsiI | ATGCAT | 1 cut(s) | 877 |
| PagI | TCATGA | 1 cut(s) | 210 |
| PdmI | GAANNNNTTC | 3 cut(s) | 423, 438, 515 |
| PfeI | GAWTC | 2 cut(s) | 49, 611 |
| PkrI | GCNGC | 1 cut(s) | 707 |
| PleI | GAGTC | 1 cut(s) | 687 |
| PpsI | GAGTC | 1 cut(s) | 687 |
| PshBI | ATTAAT | 1 cut(s) | 687 |
| PsiI | TTATAA | 1 cut(s) | 459 |
| PstI | CTGCAG | 1 cut(s) | 871 |
| PsuI | RGATCY | 1 cut(s) | 922 |
| RsaI | GTAC | 1 cut(s) | 775 |
| RsaNI | GTAC | 1 cut(s) | 774 |
| SaqAI | TTAA | 2 cut(s) | 687, 944 |
| SatI | GCNGC | 1 cut(s) | 706 |
| Sau3AI | GATC | 4 cut(s) | 213, 310, 394, 922 |
| SchI | GAGTC | 1 cut(s) | 687 |
| ScrFI | CCNGG | 1 cut(s) | 407 |
| SfaNI | GCATC | 3 cut(s) | 516, 862, 884 |
| SfcI | CTRYAG | 2 cut(s) | 618, 867 |
| Sse9I | AATT | 6 cut(s) | 250, 366, 564, 786, 887, 894 |
| SsiI | CCGC | 2 cut(s) | 488, 705 |
| SspI | AATATT | 1 cut(s) | 559 |
| SspMI | CTAG | 1 cut(s) | 633 |
| StyD4I | CCNGG | 1 cut(s) | 405 |
| TaaI | ACNGT | 4 cut(s) | 272, 377, 476, 679 |
| TasI | AATT | 6 cut(s) | 250, 366, 564, 786, 887, 894 |
| TauI | GCSGC | 1 cut(s) | 708 |
| TfiI | GAWTC | 2 cut(s) | 49, 611 |
| Tru1I | TTAA | 2 cut(s) | 687, 944 |
| Tru9I | TTAA | 2 cut(s) | 687, 944 |
| TscAI | CASTG | 1 cut(s) | 80 |
| TseFI | GTSAC | 1 cut(s) | 136 |
| Tsp45I | GTSAC | 1 cut(s) | 136 |
| TspDTI | ATGAA | 3 cut(s) | 117, 306, 942 |
| TspGWI | ACGGA | 1 cut(s) | 899 |
| TspRI | CASTG | 1 cut(s) | 80 |
| VspI | ATTAAT | 1 cut(s) | 687 |
| XmnI | GAANNNNTTC | 3 cut(s) | 423, 438, 515 |
| XspI | CTAG | 1 cut(s) | 633 |
| Zsp2I | ATGCAT | 1 cut(s) | 877 |