Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 1 - 40 | 4e-12 | PPR repeat family |
| PPR_1 | PF12854 | 25 - 52 | 4.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 27 - 76 | 1.2e-15 | PPR repeat family |
| PPR_3 | PF13812 | 52 - 107 | 4.7e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 58 - 91 | 3.5e-13 | PPR repeat |
| PPR | PF01535 | 66 - 95 | 9.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 71 - 110 | 4.8e-13 | PPR repeat family |
| PPR_1 | PF12854 | 93 - 126 | 3.9e-08 | PPR repeat |
| PPR_2 | PF13041 | 97 - 137 | 5.5e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 306 |
| Acc16I | TGCGCA | 1 cut(s) | 142 |
| Acc36I | ACCTGC | 1 cut(s) | 221 |
| AciI | CCGC | 3 cut(s) | 159, 248, 453 |
| AclWI | GGATC | 4 cut(s) | 71, 84, 156, 443 |
| AcsI | RAATTY | 1 cut(s) | 253 |
| AcuI | CTGAAG | 1 cut(s) | 164 |
| AgsI | TTSAA | 4 cut(s) | 44, 53, 137, 368 |
| Alw26I | GTCTC | 1 cut(s) | 335 |
| AlwI | GGATC | 4 cut(s) | 71, 84, 156, 443 |
| ApoI | RAATTY | 1 cut(s) | 253 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 417 |
| AspLEI | GCGC | 1 cut(s) | 143 |
| BamHI | GGATCC | 1 cut(s) | 76 |
| BccI | CCATC | 1 cut(s) | 349 |
| BceAI | ACGGC | 1 cut(s) | 448 |
| BcoDI | GTCTC | 1 cut(s) | 335 |
| BfmI | CTRYAG | 1 cut(s) | 393 |
| BfuAI | ACCTGC | 1 cut(s) | 221 |
| BmiI | GGNNCC | 1 cut(s) | 78 |
| BmsI | GCATC | 2 cut(s) | 388, 410 |
| BpuEI | CTTGAG | 1 cut(s) | 443 |
| BsaJI | CCNNGG | 1 cut(s) | 319 |
| BseDI | CCNNGG | 1 cut(s) | 319 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BslFI | GGGAC | 1 cut(s) | 372 |
| BsmAI | GTCTC | 1 cut(s) | 335 |
| BsmFI | GGGAC | 1 cut(s) | 372 |
| BsmI | GAATGC | 1 cut(s) | 143 |
| Bsp143I | GATC | 3 cut(s) | 76, 148, 448 |
| BspACI | CCGC | 3 cut(s) | 159, 248, 453 |
| BspLI | GGNNCC | 1 cut(s) | 78 |
| BspMAI | CTGCAG | 1 cut(s) | 397 |
| BspMI | ACCTGC | 1 cut(s) | 221 |
| BspPI | GGATC | 4 cut(s) | 71, 84, 156, 443 |
| BssECI | CCNNGG | 1 cut(s) | 319 |
| BssMI | GATC | 3 cut(s) | 76, 148, 448 |
| Bst4CI | ACNGT | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 1 cut(s) | 48 |
| BstDEI | CTNAG | 1 cut(s) | 33 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstHHI | GCGC | 1 cut(s) | 143 |
| BstKTI | GATC | 3 cut(s) | 79, 151, 451 |
| BstMAI | GTCTC | 1 cut(s) | 335 |
| BstMBI | GATC | 3 cut(s) | 76, 148, 448 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 407 |
| BstSFI | CTRYAG | 1 cut(s) | 393 |
| BstX2I | RGATCY | 3 cut(s) | 76, 148, 448 |
| BstYI | RGATCY | 3 cut(s) | 76, 148, 448 |
| BtgZI | GCGATG | 1 cut(s) | 368 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| BveI | ACCTGC | 1 cut(s) | 221 |
| CfoI | GCGC | 1 cut(s) | 143 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 69, 104 |
| CviJI | RGCY | 4 cut(s) | 184, 282, 325, 410 |
| CviKI_1 | RGCY | 4 cut(s) | 184, 282, 325, 410 |
| DdeI | CTNAG | 1 cut(s) | 33 |
| DpnI | GATC | 3 cut(s) | 78, 150, 450 |
| DpnII | GATC | 3 cut(s) | 76, 148, 448 |
| Eam1104I | CTCTTC | 1 cut(s) | 48 |
| EarI | CTCTTC | 1 cut(s) | 48 |
| Eco57I | CTGAAG | 1 cut(s) | 164 |
| EcoT22I | ATGCAT | 1 cut(s) | 403 |
| FaiI | YATR | 4 cut(s) | 122, 206, 263, 306 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 137, 169 |
| FaqI | GGGAC | 1 cut(s) | 372 |
| FauI | CCCGC | 1 cut(s) | 460 |
| FokI | GGATG | 1 cut(s) | 17 |
| FspI | TGCGCA | 1 cut(s) | 142 |
| GlaI | GCGC | 1 cut(s) | 142 |
| HhaI | GCGC | 1 cut(s) | 143 |
| Hin6I | GCGC | 1 cut(s) | 141 |
| HinP1I | GCGC | 1 cut(s) | 141 |
| Hpy166II | GTNNAC | 3 cut(s) | 94, 201, 218 |
| Hpy188I | TCNGA | 1 cut(s) | 320 |
| Hpy188III | TCNNGA | 2 cut(s) | 193, 422 |
| Hpy8I | GTNNAC | 3 cut(s) | 94, 201, 218 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 1 cut(s) | 98 |
| HpyCH4IV | ACGT | 1 cut(s) | 197 |
| HpyCH4V | TGCA | 5 cut(s) | 120, 230, 300, 395, 401 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 407 |
| HpyF3I | CTNAG | 1 cut(s) | 33 |
| HpySE526I | ACGT | 1 cut(s) | 197 |
| HspAI | GCGC | 1 cut(s) | 141 |
| Kzo9I | GATC | 3 cut(s) | 76, 148, 448 |
| LpnPI | CCDG | 1 cut(s) | 216 |
| LweI | GCATC | 2 cut(s) | 388, 410 |
| MaeII | ACGT | 1 cut(s) | 197 |
| MalI | GATC | 3 cut(s) | 78, 150, 450 |
| MboI | GATC | 3 cut(s) | 76, 148, 448 |
| MboII | GAAGA | 1 cut(s) | 65 |
| MfeI | CAATTG | 2 cut(s) | 26, 39 |
| MflI | RGATCY | 3 cut(s) | 76, 148, 448 |
| MluCI | AATT | 6 cut(s) | 26, 39, 71, 253, 312, 413 |
| MnlI | CCTC | 3 cut(s) | 119, 272, 314 |
| Mph1103I | ATGCAT | 1 cut(s) | 403 |
| MroXI | GAANNNNTTC | 1 cut(s) | 417 |
| MseI | TTAA | 1 cut(s) | 330 |
| MunI | CAATTG | 2 cut(s) | 26, 39 |
| Mva1269I | GAATGC | 1 cut(s) | 143 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 407 |
| NdeII | GATC | 3 cut(s) | 76, 148, 448 |
| NlaIV | GGNNCC | 1 cut(s) | 78 |
| NsbI | TGCGCA | 1 cut(s) | 142 |
| NsiI | ATGCAT | 1 cut(s) | 403 |
| PctI | GAATGC | 1 cut(s) | 143 |
| PdmI | GAANNNNTTC | 1 cut(s) | 417 |
| PsiI | TTATAA | 1 cut(s) | 306 |
| PspN4I | GGNNCC | 1 cut(s) | 78 |
| PstI | CTGCAG | 1 cut(s) | 397 |
| PsuI | RGATCY | 3 cut(s) | 76, 148, 448 |
| SaqAI | TTAA | 1 cut(s) | 330 |
| Sau3AI | GATC | 3 cut(s) | 76, 148, 448 |
| SetI | ASST | 3 cut(s) | 115, 200, 235 |
| SfaNI | GCATC | 2 cut(s) | 388, 410 |
| SfcI | CTRYAG | 1 cut(s) | 393 |
| SgeI | CNNG | 7 cut(s) | 79, 205, 243, 332, 360, 434, 464 |
| SmlI | CTYRAG | 1 cut(s) | 422 |
| SmoI | CTYRAG | 1 cut(s) | 422 |
| Sse9I | AATT | 6 cut(s) | 26, 39, 71, 253, 312, 413 |
| SsiI | CCGC | 3 cut(s) | 159, 248, 453 |
| SspI | AATATT | 1 cut(s) | 85 |
| TaaI | ACNGT | 1 cut(s) | 98 |
| TaiI | ACGT | 1 cut(s) | 200 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TasI | AATT | 6 cut(s) | 26, 39, 71, 253, 312, 413 |
| Tru1I | TTAA | 1 cut(s) | 330 |
| Tru9I | TTAA | 1 cut(s) | 330 |
| TspDTI | ATGAA | 3 cut(s) | 74, 258, 284 |
| XapI | RAATTY | 1 cut(s) | 253 |
| XmnI | GAANNNNTTC | 1 cut(s) | 417 |
| Zsp2I | ATGCAT | 1 cut(s) | 403 |