Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 9 - 57 | 5.1e-06 | PPR repeat family |
| PPR_3 | PF13812 | 76 - 122 | 2.3e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 77 - 125 | 6.4e-12 | PPR repeat family |
| PPR_1 | PF12854 | 109 - 141 | 1e-09 | PPR repeat |
| PPR_1 | PF12854 | 144 - 175 | 6.9e-10 | PPR repeat |
| PPR_2 | PF13041 | 146 - 195 | 2.5e-16 | PPR repeat family |
| PPR_3 | PF13812 | 170 - 214 | 1.3e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 177 - 210 | 4.6e-12 | PPR repeat |
| PPR_2 | PF13041 | 181 - 214 | 6e-09 | PPR repeat family |
| PPR | PF01535 | 184 - 213 | 4.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 222 - 246 | 1.4e-06 | PPR repeat family |
| PPR_3 | PF13812 | 224 - 276 | 2.7e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 229 - 261 | 3.3e-14 | PPR repeat |
| PPR_2 | PF13041 | 232 - 279 | 2e-16 | PPR repeat family |
| PPR | PF01535 | 235 - 264 | 1.4e-08 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 446 |
| AatII | GACGTC | 1 cut(s) | 444 |
| Acc65I | GGTACC | 1 cut(s) | 383 |
| AccB1I | GGYRCC | 1 cut(s) | 383 |
| AcoI | YGGCCR | 1 cut(s) | 790 |
| AcsI | RAATTY | 1 cut(s) | 120 |
| AcyI | GRCGYC | 2 cut(s) | 13, 441 |
| AfaI | GTAC | 2 cut(s) | 385, 715 |
| AflII | CTTAAG | 2 cut(s) | 269, 410 |
| AgsI | TTSAA | 7 cut(s) | 8, 70, 97, 217, 304, 379, 809 |
| AhlI | ACTAGT | 1 cut(s) | 358 |
| AleI | CACNNNNGTG | 1 cut(s) | 44 |
| AluBI | AGCT | 3 cut(s) | 428, 605, 785 |
| AluI | AGCT | 3 cut(s) | 428, 605, 785 |
| Alw26I | GTCTC | 1 cut(s) | 681 |
| AoxI | GGCC | 3 cut(s) | 282, 367, 790 |
| ApeKI | GCWGC | 3 cut(s) | 290, 293, 395 |
| ApoI | RAATTY | 1 cut(s) | 120 |
| AseI | ATTAAT | 1 cut(s) | 156 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 767 |
| Asp718I | GGTACC | 1 cut(s) | 383 |
| AspS9I | GGNCC | 1 cut(s) | 367 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 474, 507 |
| BalI | TGGCCA | 1 cut(s) | 792 |
| BanI | GGYRCC | 1 cut(s) | 383 |
| BbvI | GCAGC | 3 cut(s) | 302, 305, 407 |
| BccI | CCATC | 4 cut(s) | 307, 412, 719, 733 |
| BciVI | GTATCC | 1 cut(s) | 475 |
| BcoDI | GTCTC | 1 cut(s) | 681 |
| BcuI | ACTAGT | 1 cut(s) | 358 |
| BfaI | CTAG | 2 cut(s) | 359, 488 |
| BfmI | CTRYAG | 2 cut(s) | 393, 451 |
| BfrI | CTTAAG | 2 cut(s) | 269, 410 |
| BfuI | GTATCC | 1 cut(s) | 475 |
| BisI | GCNGC | 3 cut(s) | 291, 294, 396 |
| BlsI | GCNGC | 3 cut(s) | 292, 295, 397 |
| BmcAI | AGTACT | 1 cut(s) | 715 |
| BmgT120I | GGNCC | 1 cut(s) | 367 |
| BmiI | GGNNCC | 1 cut(s) | 385 |
| BmsI | GCATC | 3 cut(s) | 121, 487, 745 |
| BpuEI | CTTGAG | 1 cut(s) | 27 |
| BsaHI | GRCGYC | 2 cut(s) | 13, 441 |
| BsaJI | CCNNGG | 2 cut(s) | 285, 654 |
| Bse3DI | GCAATG | 1 cut(s) | 534 |
| BseDI | CCNNGG | 2 cut(s) | 285, 654 |
| BseGI | GGATG | 1 cut(s) | 664 |
| BseMI | GCAATG | 1 cut(s) | 534 |
| BseMII | CTCAG | 1 cut(s) | 528 |
| BseXI | GCAGC | 3 cut(s) | 302, 305, 407 |
| BshFI | GGCC | 3 cut(s) | 284, 369, 792 |
| BshNI | GGYRCC | 1 cut(s) | 383 |
| BsmAI | GTCTC | 1 cut(s) | 681 |
| BsnI | GGCC | 3 cut(s) | 284, 369, 792 |
| BspANI | GGCC | 3 cut(s) | 284, 369, 792 |
| BspCNI | CTCAG | 1 cut(s) | 527 |
| BspHI | TCATGA | 1 cut(s) | 679 |
| BspLI | GGNNCC | 1 cut(s) | 385 |
| BspMAI | CTGCAG | 1 cut(s) | 397 |
| BspT107I | GGYRCC | 1 cut(s) | 383 |
| BspTI | CTTAAG | 2 cut(s) | 269, 410 |
| BsrDI | GCAATG | 1 cut(s) | 534 |
| BssECI | CCNNGG | 2 cut(s) | 285, 654 |
| BssNI | GRCGYC | 2 cut(s) | 13, 441 |
| Bst4CI | ACNGT | 3 cut(s) | 85, 260, 470 |
| Bst6I | CTCTTC | 1 cut(s) | 515 |
| BstACI | GRCGYC | 2 cut(s) | 13, 441 |
| BstAFI | CTTAAG | 2 cut(s) | 269, 410 |
| BstC8I | GCNNGC | 4 cut(s) | 332, 430, 434, 783 |
| BstDEI | CTNAG | 1 cut(s) | 514 |
| BstF5I | GGATG | 1 cut(s) | 664 |
| BstMAI | GTCTC | 1 cut(s) | 681 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 290 |
| BstSFI | CTRYAG | 2 cut(s) | 393, 451 |
| BstV1I | GCAGC | 3 cut(s) | 302, 305, 407 |
| BsuI | GTATCC | 1 cut(s) | 475 |
| BsuRI | GGCC | 3 cut(s) | 284, 369, 792 |
| BtsCI | GGATG | 1 cut(s) | 664 |
| BtsI | GCAGTG | 1 cut(s) | 390 |
| BtsIMutI | CAGTG | 2 cut(s) | 390, 758 |
| Cac8I | GCNNGC | 4 cut(s) | 332, 430, 434, 783 |
| CciI | TCATGA | 1 cut(s) | 679 |
| Cfr13I | GGNCC | 1 cut(s) | 367 |
| CseI | GACGC | 1 cut(s) | 2 |
| Csp6I | GTAC | 2 cut(s) | 384, 714 |
| CviAII | CATG | 4 cut(s) | 64, 572, 680, 830 |
| CviJI | RGCY | 8 cut(s) | 284, 334, 369, 428, 436, 605, 785, 792 |
| CviKI_1 | RGCY | 8 cut(s) | 284, 334, 369, 428, 436, 605, 785, 792 |
| CviQI | GTAC | 2 cut(s) | 384, 714 |
| DdeI | CTNAG | 1 cut(s) | 514 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 446 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 446 |
| EaeI | YGGCCR | 1 cut(s) | 790 |
| Eam1104I | CTCTTC | 1 cut(s) | 515 |
| EarI | CTCTTC | 1 cut(s) | 515 |
| EcoO109I | RGGNCCY | 1 cut(s) | 367 |
| EcoRI | GAATTC | 1 cut(s) | 120 |
| FaeI | CATG | 4 cut(s) | 67, 575, 683, 833 |
| FatI | CATG | 4 cut(s) | 63, 571, 679, 829 |
| Fnu4HI | GCNGC | 3 cut(s) | 291, 294, 396 |
| FokI | GGATG | 1 cut(s) | 671 |
| Fsp4HI | GCNGC | 3 cut(s) | 291, 294, 396 |
| FspBI | CTAG | 2 cut(s) | 359, 488 |
| GluI | GCNGC | 3 cut(s) | 291, 294, 396 |
| HaeIII | GGCC | 3 cut(s) | 284, 369, 792 |
| HgaI | GACGC | 1 cut(s) | 2 |
| Hin1I | GRCGYC | 2 cut(s) | 13, 441 |
| Hin1II | CATG | 4 cut(s) | 67, 575, 683, 833 |
| HincII | GTYRAC | 1 cut(s) | 56 |
| HindII | GTYRAC | 1 cut(s) | 56 |
| HindIII | AAGCTT | 1 cut(s) | 783 |
| HinfI | GANTC | 1 cut(s) | 687 |
| Hpy166II | GTNNAC | 1 cut(s) | 56 |
| Hpy188I | TCNGA | 2 cut(s) | 517, 658 |
| Hpy188III | TCNNGA | 4 cut(s) | 128, 542, 668, 680 |
| Hpy8I | GTNNAC | 1 cut(s) | 56 |
| Hpy99I | CGWCG | 1 cut(s) | 446 |
| HpyAV | CCTTC | 2 cut(s) | 33, 416 |
| HpyCH4III | ACNGT | 3 cut(s) | 85, 260, 470 |
| HpyCH4IV | ACGT | 1 cut(s) | 441 |
| HpyCH4V | TGCA | 9 cut(s) | 330, 395, 432, 500, 582, 735, 758, 781, 829 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 290 |
| HpyF3I | CTNAG | 1 cut(s) | 514 |
| HpySE526I | ACGT | 1 cut(s) | 441 |
| Hsp92I | GRCGYC | 2 cut(s) | 13, 441 |
| Hsp92II | CATG | 4 cut(s) | 67, 575, 683, 833 |
| KpnI | GGTACC | 1 cut(s) | 387 |
| LmnI | GCTCC | 2 cut(s) | 425, 544 |
| LpnPI | CCDG | 4 cut(s) | 141, 348, 450, 653 |
| Lsp1109I | GCAGC | 3 cut(s) | 302, 305, 407 |
| LweI | GCATC | 3 cut(s) | 121, 487, 745 |
| MaeI | CTAG | 2 cut(s) | 359, 488 |
| MaeII | ACGT | 1 cut(s) | 441 |
| MaeIII | GTNAC | 4 cut(s) | 206, 232, 343, 703 |
| MboII | GAAGA | 3 cut(s) | 205, 427, 502 |
| MfeI | CAATTG | 1 cut(s) | 404 |
| MlsI | TGGCCA | 1 cut(s) | 792 |
| MluCI | AATT | 7 cut(s) | 120, 157, 218, 297, 325, 404, 592 |
| MluNI | TGGCCA | 1 cut(s) | 792 |
| MlyI | GAGTC | 1 cut(s) | 696 |
| MnlI | CCTC | 8 cut(s) | 27, 274, 280, 380, 518, 571, 664, 676 |
| Mox20I | TGGCCA | 1 cut(s) | 792 |
| MroXI | GAANNNNTTC | 1 cut(s) | 767 |
| MscI | TGGCCA | 1 cut(s) | 792 |
| MseI | TTAA | 6 cut(s) | 156, 174, 270, 411, 618, 645 |
| MslI | CAYNNNNRTG | 1 cut(s) | 44 |
| Msp20I | TGGCCA | 1 cut(s) | 792 |
| MspCI | CTTAAG | 2 cut(s) | 269, 410 |
| MunI | CAATTG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 19, 290 |
| NlaIII | CATG | 4 cut(s) | 67, 575, 683, 833 |
| NlaIV | GGNNCC | 1 cut(s) | 385 |
| NmeAIII | GCCGAG | 1 cut(s) | 310 |
| NmuCI | GTSAC | 2 cut(s) | 232, 343 |
| OliI | CACNNNNGTG | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 679 |
| PdmI | GAANNNNTTC | 1 cut(s) | 767 |
| PkrI | GCNGC | 3 cut(s) | 292, 295, 397 |
| PleI | GAGTC | 1 cut(s) | 695 |
| PpsI | GAGTC | 1 cut(s) | 695 |
| PshBI | ATTAAT | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 1 cut(s) | 385 |
| PspPI | GGNCC | 1 cut(s) | 367 |
| PstI | CTGCAG | 1 cut(s) | 397 |
| RsaI | GTAC | 2 cut(s) | 385, 715 |
| RsaNI | GTAC | 2 cut(s) | 384, 714 |
| RseI | CAYNNNNRTG | 1 cut(s) | 44 |
| SaqAI | TTAA | 6 cut(s) | 156, 174, 270, 411, 618, 645 |
| SatI | GCNGC | 3 cut(s) | 291, 294, 396 |
| Sau96I | GGNCC | 1 cut(s) | 367 |
| ScaI | AGTACT | 1 cut(s) | 715 |
| SchI | GAGTC | 1 cut(s) | 696 |
| SfaNI | GCATC | 3 cut(s) | 121, 487, 745 |
| SfcI | CTRYAG | 2 cut(s) | 393, 451 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 44 |
| SmlI | CTYRAG | 3 cut(s) | 42, 269, 410 |
| SmoI | CTYRAG | 3 cut(s) | 42, 269, 410 |
| SpeI | ACTAGT | 1 cut(s) | 358 |
| Sse9I | AATT | 7 cut(s) | 120, 157, 218, 297, 325, 404, 592 |
| SspMI | CTAG | 2 cut(s) | 359, 488 |
| TaaI | ACNGT | 3 cut(s) | 85, 260, 470 |
| TaiI | ACGT | 1 cut(s) | 444 |
| TasI | AATT | 7 cut(s) | 120, 157, 218, 297, 325, 404, 592 |
| TatI | WGTACW | 1 cut(s) | 713 |
| Tru1I | TTAA | 6 cut(s) | 156, 174, 270, 411, 618, 645 |
| Tru9I | TTAA | 6 cut(s) | 156, 174, 270, 411, 618, 645 |
| TscAI | CASTG | 2 cut(s) | 397, 765 |
| TseFI | GTSAC | 2 cut(s) | 232, 343 |
| TseI | GCWGC | 3 cut(s) | 290, 293, 395 |
| Tsp45I | GTSAC | 2 cut(s) | 232, 343 |
| TspDTI | ATGAA | 2 cut(s) | 560, 636 |
| TspRI | CASTG | 2 cut(s) | 397, 765 |
| Vha464I | CTTAAG | 2 cut(s) | 269, 410 |
| VspI | ATTAAT | 1 cut(s) | 156 |
| XapI | RAATTY | 1 cut(s) | 120 |
| XmnI | GAANNNNTTC | 1 cut(s) | 767 |
| XspI | CTAG | 2 cut(s) | 359, 488 |
| ZraI | GACGTC | 1 cut(s) | 442 |
| ZrmI | AGTACT | 1 cut(s) | 715 |