Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 23 - 67 | 4.4e-12 | PPR repeat family |
| PPR_1 | PF12854 | 50 - 70 | 5.1e-09 | PPR repeat |
| PPR_3 | PF13812 | 109 - 165 | 2.1e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 118 - 146 | 8.1e-08 | PPR repeat |
| PPR_2 | PF13041 | 121 - 169 | 2.3e-18 | PPR repeat family |
| PPR | PF01535 | 123 - 153 | 1e-05 | PPR repeat |
| PPR_1 | PF12854 | 151 - 181 | 2.2e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 203 |
| AcsI | RAATTY | 2 cut(s) | 290, 350 |
| AgsI | TTSAA | 4 cut(s) | 130, 389, 416, 524 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 545, 577 |
| AluBI | AGCT | 3 cut(s) | 237, 380, 404 |
| AluI | AGCT | 3 cut(s) | 237, 380, 404 |
| ApoI | RAATTY | 2 cut(s) | 290, 350 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 153 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AsuII | TTCGAA | 2 cut(s) | 288, 354 |
| BanII | GRGCYC | 1 cut(s) | 47 |
| BccI | CCATC | 3 cut(s) | 182, 312, 331 |
| BglII | AGATCT | 1 cut(s) | 427 |
| BmiI | GGNNCC | 1 cut(s) | 46 |
| BmrI | ACTGGG | 1 cut(s) | 517 |
| BmsI | GCATC | 1 cut(s) | 239 |
| BmuI | ACTGGG | 1 cut(s) | 517 |
| Bpu14I | TTCGAA | 2 cut(s) | 288, 354 |
| BsaJI | CCNNGG | 1 cut(s) | 48 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 199, 229, 545, 575 |
| Bse1I | ACTGG | 1 cut(s) | 512 |
| BseDI | CCNNGG | 1 cut(s) | 48 |
| BseGI | GGATG | 2 cut(s) | 342, 472 |
| BseMII | CTCAG | 2 cut(s) | 259, 530 |
| BseNI | ACTGG | 1 cut(s) | 512 |
| BsiSI | CCGG | 1 cut(s) | 464 |
| BsmI | GAATGC | 1 cut(s) | 224 |
| Bsp119I | TTCGAA | 2 cut(s) | 288, 354 |
| Bsp1286I | GDGCHC | 1 cut(s) | 47 |
| Bsp143I | GATC | 3 cut(s) | 25, 105, 427 |
| Bsp19I | CCATGG | 1 cut(s) | 48 |
| BspACI | CCGC | 1 cut(s) | 203 |
| BspCNI | CTCAG | 2 cut(s) | 258, 531 |
| BspLI | GGNNCC | 1 cut(s) | 46 |
| BspT104I | TTCGAA | 2 cut(s) | 288, 354 |
| BsrI | ACTGG | 1 cut(s) | 512 |
| BssECI | CCNNGG | 1 cut(s) | 48 |
| BssMI | GATC | 3 cut(s) | 25, 105, 427 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst6I | CTCTTC | 1 cut(s) | 437 |
| BstBI | TTCGAA | 2 cut(s) | 288, 354 |
| BstC8I | GCNNGC | 1 cut(s) | 254 |
| BstDEI | CTNAG | 2 cut(s) | 245, 539 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 2 cut(s) | 342, 472 |
| BstKTI | GATC | 3 cut(s) | 28, 108, 430 |
| BstMBI | GATC | 3 cut(s) | 25, 105, 427 |
| BstX2I | RGATCY | 1 cut(s) | 427 |
| BstYI | RGATCY | 1 cut(s) | 427 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 2 cut(s) | 342, 472 |
| Cac8I | GCNNGC | 1 cut(s) | 254 |
| CviAII | CATG | 1 cut(s) | 49 |
| DdeI | CTNAG | 2 cut(s) | 245, 539 |
| DpnI | GATC | 3 cut(s) | 27, 107, 429 |
| DpnII | GATC | 3 cut(s) | 25, 105, 427 |
| Eam1104I | CTCTTC | 1 cut(s) | 437 |
| EarI | CTCTTC | 1 cut(s) | 437 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| Eco24I | GRGCYC | 1 cut(s) | 47 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| EcoT38I | GRGCYC | 1 cut(s) | 47 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 1 cut(s) | 52 |
| FaiI | YATR | 7 cut(s) | 32, 50, 74, 146, 478, 485, 583 |
| FatI | CATG | 1 cut(s) | 48 |
| FauI | CCCGC | 1 cut(s) | 196 |
| FokI | GGATG | 2 cut(s) | 349, 479 |
| FriOI | GRGCYC | 1 cut(s) | 47 |
| HapII | CCGG | 1 cut(s) | 464 |
| Hin1II | CATG | 1 cut(s) | 52 |
| HinfI | GANTC | 1 cut(s) | 416 |
| HpaII | CCGG | 1 cut(s) | 464 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 2 cut(s) | 373, 497 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 248 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| Hpy8I | GTNNAC | 2 cut(s) | 373, 497 |
| HpyAV | CCTTC | 1 cut(s) | 383 |
| HpyCH4V | TGCA | 6 cut(s) | 93, 198, 222, 252, 399, 577 |
| HpyF3I | CTNAG | 2 cut(s) | 245, 539 |
| Hsp92II | CATG | 1 cut(s) | 52 |
| Kzo9I | GATC | 3 cut(s) | 25, 105, 427 |
| LmnI | GCTCC | 1 cut(s) | 50 |
| LpnPI | CCDG | 5 cut(s) | 273, 390, 436, 477, 493 |
| LweI | GCATC | 1 cut(s) | 239 |
| MaeIII | GTNAC | 2 cut(s) | 469, 503 |
| MalI | GATC | 3 cut(s) | 27, 107, 429 |
| MboI | GATC | 3 cut(s) | 25, 105, 427 |
| MboII | GAAGA | 1 cut(s) | 424 |
| MflI | RGATCY | 1 cut(s) | 427 |
| MhlI | GDGCHC | 1 cut(s) | 47 |
| MluCI | AATT | 3 cut(s) | 290, 350, 411 |
| MnlI | CCTC | 3 cut(s) | 57, 543, 549 |
| MroXI | GAANNNNTTC | 1 cut(s) | 153 |
| MseI | TTAA | 5 cut(s) | 54, 81, 174, 312, 330 |
| MslI | CAYNNNNRTG | 1 cut(s) | 485 |
| MspA1I | CMGCKG | 1 cut(s) | 380 |
| MspI | CCGG | 1 cut(s) | 464 |
| Mva1269I | GAATGC | 1 cut(s) | 224 |
| NcoI | CCATGG | 1 cut(s) | 48 |
| NdeII | GATC | 3 cut(s) | 25, 105, 427 |
| NlaIII | CATG | 1 cut(s) | 52 |
| NlaIV | GGNNCC | 1 cut(s) | 46 |
| NmuCI | GTSAC | 1 cut(s) | 469 |
| NspV | TTCGAA | 2 cut(s) | 288, 354 |
| PctI | GAATGC | 1 cut(s) | 224 |
| PdmI | GAANNNNTTC | 1 cut(s) | 153 |
| PfeI | GAWTC | 1 cut(s) | 416 |
| PspN4I | GGNNCC | 1 cut(s) | 46 |
| PsuI | RGATCY | 1 cut(s) | 427 |
| PvuII | CAGCTG | 1 cut(s) | 380 |
| RseI | CAYNNNNRTG | 1 cut(s) | 485 |
| SaqAI | TTAA | 5 cut(s) | 54, 81, 174, 312, 330 |
| Sau3AI | GATC | 3 cut(s) | 25, 105, 427 |
| SduI | GDGCHC | 1 cut(s) | 47 |
| SetI | ASST | 6 cut(s) | 68, 239, 382, 394, 406, 582 |
| SfaNI | GCATC | 1 cut(s) | 239 |
| SfuI | TTCGAA | 2 cut(s) | 288, 354 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 485 |
| Sse9I | AATT | 3 cut(s) | 290, 350, 411 |
| SsiI | CCGC | 1 cut(s) | 203 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaqI | TCGA | 2 cut(s) | 288, 354 |
| TasI | AATT | 3 cut(s) | 290, 350, 411 |
| TfiI | GAWTC | 1 cut(s) | 416 |
| Tru1I | TTAA | 5 cut(s) | 54, 81, 174, 312, 330 |
| Tru9I | TTAA | 5 cut(s) | 54, 81, 174, 312, 330 |
| TseFI | GTSAC | 1 cut(s) | 469 |
| Tsp45I | GTSAC | 1 cut(s) | 469 |
| XapI | RAATTY | 2 cut(s) | 290, 350 |
| XmnI | GAANNNNTTC | 1 cut(s) | 153 |