Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 2 - 35 | 6.4e-08 | PPR repeat family |
| PPR_long | PF17177 | 5 - 135 | 8.2e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 17 - 49 | 9.3e-12 | PPR repeat |
| PPR_2 | PF13041 | 21 - 70 | 5.2e-19 | PPR repeat family |
| PPR | PF01535 | 24 - 54 | 2.8e-07 | PPR repeat |
| PPR_3 | PF13812 | 45 - 105 | 2.3e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 52 - 85 | 4.1e-12 | PPR repeat |
| PPR_2 | PF13041 | 56 - 105 | 3.3e-18 | PPR repeat family |
| PPR | PF01535 | 59 - 89 | 1.9e-07 | PPR repeat |
| MRP-S27 | PF10037 | 60 - 122 | 5.1e-08 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 87 - 119 | 4.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 91 - 139 | 8.1e-14 | PPR repeat family |
| TPR_24 | PF23276 | 101 - 223 | 4.8e-10 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 123 - 154 | 4.6e-12 | PPR repeat |
| PPR_2 | PF13041 | 126 - 163 | 6.5e-09 | PPR repeat family |
| PPR | PF01535 | 129 - 158 | 3.7e-09 | PPR repeat |
| PPR_3 | PF13812 | 157 - 206 | 2.7e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 158 - 190 | 5.6e-08 | PPR repeat |
| PPR_2 | PF13041 | 162 - 210 | 1e-17 | PPR repeat family |
| PPR | PF01535 | 165 - 191 | 7e-08 | PPR repeat |
| TPR_24 | PF23276 | 182 - 291 | 6.5e-07 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 193 - 224 | 1e-15 | PPR repeat |
| PPR_2 | PF13041 | 196 - 245 | 7.7e-19 | PPR repeat family |
| PPR | PF01535 | 199 - 228 | 3.7e-10 | PPR repeat |
| PPR_1 | PF12854 | 228 - 260 | 2.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 239 - 280 | 1.7e-08 | PPR repeat family |
| PPR_3 | PF13812 | 255 - 311 | 1.4e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 267 - 315 | 9e-15 | PPR repeat family |
| PPR_3 | PF13812 | 296 - 346 | 3e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 298 - 329 | 2.6e-11 | PPR repeat |
| PPR | PF01535 | 305 - 334 | 1.6e-09 | PPR repeat |
| PPR_2 | PF13041 | 309 - 349 | 7.4e-13 | PPR repeat family |
| PPR_1 | PF12854 | 332 - 364 | 1.3e-06 | PPR repeat |
| PPR_2 | PF13041 | 339 - 383 | 6.7e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 603 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 942 |
| AatII | GACGTC | 1 cut(s) | 1064 |
| AciI | CCGC | 3 cut(s) | 632, 858, 1181 |
| AcoI | YGGCCR | 1 cut(s) | 682 |
| AcsI | RAATTY | 1 cut(s) | 201 |
| AcyI | GRCGYC | 1 cut(s) | 1061 |
| AluBI | AGCT | 3 cut(s) | 230, 688, 842 |
| AluI | AGCT | 3 cut(s) | 230, 688, 842 |
| Alw26I | GTCTC | 3 cut(s) | 631, 1052, 1069 |
| AoxI | GGCC | 4 cut(s) | 214, 333, 682, 724 |
| ApeKI | GCWGC | 1 cut(s) | 17 |
| ApoI | RAATTY | 1 cut(s) | 201 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 134, 582 |
| AsuC2I | CCSGG | 1 cut(s) | 63 |
| AsuHPI | GGTGA | 2 cut(s) | 265, 274 |
| BalI | TGGCCA | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 476 |
| BbvI | GCAGC | 1 cut(s) | 4 |
| BccI | CCATC | 5 cut(s) | 34, 92, 316, 611, 716 |
| BceAI | ACGGC | 1 cut(s) | 768 |
| BciVI | GTATCC | 1 cut(s) | 100 |
| BcnI | CCSGG | 1 cut(s) | 63 |
| BcoDI | GTCTC | 3 cut(s) | 631, 1052, 1069 |
| BfaI | CTAG | 2 cut(s) | 674, 843 |
| BfmI | CTRYAG | 1 cut(s) | 1110 |
| BfuI | GTATCC | 1 cut(s) | 100 |
| BglII | AGATCT | 1 cut(s) | 865 |
| BisI | GCNGC | 2 cut(s) | 18, 1181 |
| BlsI | GCNGC | 2 cut(s) | 19, 1182 |
| Bme1390I | CCNGG | 1 cut(s) | 63 |
| BmiI | GGNNCC | 1 cut(s) | 475 |
| BmrFI | CCNGG | 1 cut(s) | 63 |
| BmsI | GCATC | 4 cut(s) | 44, 660, 1105, 1127 |
| BpuEI | CTTGAG | 1 cut(s) | 1115 |
| BpuMI | CCSGG | 1 cut(s) | 63 |
| BsaHI | GRCGYC | 1 cut(s) | 1061 |
| BsaJI | CCNNGG | 2 cut(s) | 477, 1036 |
| Bse3DI | GCAATG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 2 cut(s) | 477, 1036 |
| BseGI | GGATG | 3 cut(s) | 59, 327, 1004 |
| BseMI | GCAATG | 1 cut(s) | 132 |
| BseMII | CTCAG | 3 cut(s) | 153, 680, 968 |
| BseRI | GAGGAG | 1 cut(s) | 438 |
| BseXI | GCAGC | 1 cut(s) | 4 |
| BshFI | GGCC | 4 cut(s) | 216, 335, 684, 726 |
| BsiSI | CCGG | 1 cut(s) | 63 |
| BslFI | GGGAC | 2 cut(s) | 948, 1002 |
| BsmAI | GTCTC | 3 cut(s) | 631, 1052, 1069 |
| BsmBI | CGTCTC | 1 cut(s) | 1052 |
| BsmFI | GGGAC | 2 cut(s) | 948, 1002 |
| BsnI | GGCC | 4 cut(s) | 216, 335, 684, 726 |
| Bsp1286I | GDGCHC | 1 cut(s) | 476 |
| Bsp143I | GATC | 3 cut(s) | 454, 865, 1165 |
| Bsp19I | CCATGG | 1 cut(s) | 477 |
| BspACI | CCGC | 3 cut(s) | 632, 858, 1181 |
| BspANI | GGCC | 4 cut(s) | 216, 335, 684, 726 |
| BspCNI | CTCAG | 3 cut(s) | 152, 679, 969 |
| BspLI | GGNNCC | 1 cut(s) | 475 |
| BspMAI | CTGCAG | 1 cut(s) | 1114 |
| BsrDI | GCAATG | 1 cut(s) | 132 |
| BssECI | CCNNGG | 2 cut(s) | 477, 1036 |
| BssMI | GATC | 3 cut(s) | 454, 865, 1165 |
| BssNI | GRCGYC | 1 cut(s) | 1061 |
| BssT1I | CCWWGG | 1 cut(s) | 477 |
| Bst4CI | ACNGT | 4 cut(s) | 95, 410, 416, 922 |
| Bst6I | CTCTTC | 2 cut(s) | 140, 875 |
| BstACI | GRCGYC | 1 cut(s) | 1061 |
| BstC8I | GCNNGC | 2 cut(s) | 59, 686 |
| BstDEI | CTNAG | 4 cut(s) | 139, 312, 666, 977 |
| BstDSI | CCRYGG | 1 cut(s) | 477 |
| BstF5I | GGATG | 3 cut(s) | 59, 327, 1004 |
| BstKTI | GATC | 3 cut(s) | 457, 868, 1168 |
| BstMAI | GTCTC | 3 cut(s) | 631, 1052, 1069 |
| BstMBI | GATC | 3 cut(s) | 454, 865, 1165 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 63, 213 |
| BstSCI | CCNGG | 1 cut(s) | 61 |
| BstSFI | CTRYAG | 1 cut(s) | 1110 |
| BstV1I | GCAGC | 1 cut(s) | 4 |
| BstX2I | RGATCY | 1 cut(s) | 865 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 343 |
| BstYI | RGATCY | 1 cut(s) | 865 |
| BsuI | GTATCC | 1 cut(s) | 100 |
| BsuRI | GGCC | 4 cut(s) | 216, 335, 684, 726 |
| BtgI | CCRYGG | 1 cut(s) | 477 |
| BtsCI | GGATG | 3 cut(s) | 59, 327, 1004 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 2 cut(s) | 12, 918 |
| Cac8I | GCNNGC | 2 cut(s) | 59, 686 |
| CseI | GACGC | 1 cut(s) | 557 |
| CviAII | CATG | 4 cut(s) | 352, 478, 947, 1065 |
| DdeI | CTNAG | 4 cut(s) | 139, 312, 666, 977 |
| DpnI | GATC | 3 cut(s) | 456, 867, 1167 |
| DpnII | GATC | 3 cut(s) | 454, 865, 1165 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 942 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 942 |
| EaeI | YGGCCR | 1 cut(s) | 682 |
| Eam1104I | CTCTTC | 2 cut(s) | 140, 875 |
| EarI | CTCTTC | 2 cut(s) | 140, 875 |
| Eco130I | CCWWGG | 1 cut(s) | 477 |
| Eco24I | GRGCYC | 1 cut(s) | 476 |
| EcoT14I | CCWWGG | 1 cut(s) | 477 |
| EcoT22I | ATGCAT | 1 cut(s) | 1120 |
| EcoT38I | GRGCYC | 1 cut(s) | 476 |
| ErhI | CCWWGG | 1 cut(s) | 477 |
| Esp3I | CGTCTC | 1 cut(s) | 1052 |
| FaeI | CATG | 4 cut(s) | 355, 481, 950, 1068 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 780, 812, 1077, 1109 |
| FaqI | GGGAC | 2 cut(s) | 948, 1002 |
| FatI | CATG | 4 cut(s) | 351, 477, 946, 1064 |
| FauI | CCCGC | 1 cut(s) | 625 |
| FauNDI | CATATG | 1 cut(s) | 573 |
| Fnu4HI | GCNGC | 2 cut(s) | 18, 1181 |
| FokI | GGATG | 3 cut(s) | 66, 334, 1011 |
| FriOI | GRGCYC | 1 cut(s) | 476 |
| Fsp4HI | GCNGC | 2 cut(s) | 18, 1181 |
| FspBI | CTAG | 2 cut(s) | 674, 843 |
| GluI | GCNGC | 2 cut(s) | 18, 1181 |
| HaeIII | GGCC | 4 cut(s) | 216, 335, 684, 726 |
| HapII | CCGG | 1 cut(s) | 63 |
| HgaI | GACGC | 1 cut(s) | 557 |
| Hin1I | GRCGYC | 1 cut(s) | 1061 |
| Hin1II | CATG | 4 cut(s) | 355, 481, 950, 1068 |
| HincII | GTYRAC | 1 cut(s) | 349 |
| HindII | GTYRAC | 1 cut(s) | 349 |
| HinfI | GANTC | 5 cut(s) | 193, 358, 854, 928, 936 |
| HpaII | CCGG | 1 cut(s) | 63 |
| HphI | GGTGA | 2 cut(s) | 265, 274 |
| Hpy166II | GTNNAC | 2 cut(s) | 349, 811 |
| Hpy188I | TCNGA | 5 cut(s) | 142, 492, 669, 911, 1037 |
| Hpy188III | TCNNGA | 3 cut(s) | 272, 692, 1085 |
| Hpy8I | GTNNAC | 2 cut(s) | 349, 811 |
| Hpy99I | CGWCG | 2 cut(s) | 95, 176 |
| HpyAV | CCTTC | 3 cut(s) | 295, 821, 1147 |
| HpyCH4III | ACNGT | 4 cut(s) | 95, 410, 416, 922 |
| HpyCH4IV | ACGT | 2 cut(s) | 171, 1061 |
| HpyCH4V | TGCA | 8 cut(s) | 57, 207, 522, 627, 837, 1017, 1112, 1118 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 63, 213 |
| HpyF3I | CTNAG | 4 cut(s) | 139, 312, 666, 977 |
| HpySE526I | ACGT | 2 cut(s) | 171, 1061 |
| Hsp92I | GRCGYC | 1 cut(s) | 1061 |
| Hsp92II | CATG | 4 cut(s) | 355, 481, 950, 1068 |
| Kzo9I | GATC | 3 cut(s) | 454, 865, 1165 |
| LmnI | GCTCC | 2 cut(s) | 169, 479 |
| LpnPI | CCDG | 9 cut(s) | 76, 285, 390, 698, 705, 740, 752, 917, 1154 |
| Lsp1109I | GCAGC | 1 cut(s) | 4 |
| LweI | GCATC | 4 cut(s) | 44, 660, 1105, 1127 |
| MaeI | CTAG | 2 cut(s) | 674, 843 |
| MaeII | ACGT | 2 cut(s) | 171, 1061 |
| MaeIII | GTNAC | 5 cut(s) | 175, 280, 410, 497, 731 |
| MalI | GATC | 3 cut(s) | 456, 867, 1167 |
| MboI | GATC | 3 cut(s) | 454, 865, 1165 |
| MboII | GAAGA | 4 cut(s) | 49, 56, 127, 862 |
| MflI | RGATCY | 1 cut(s) | 865 |
| MhlI | GDGCHC | 1 cut(s) | 476 |
| MlsI | TGGCCA | 1 cut(s) | 684 |
| MluCI | AATT | 8 cut(s) | 26, 114, 201, 578, 761, 849, 957, 1130 |
| MluNI | TGGCCA | 1 cut(s) | 684 |
| MlyI | GAGTC | 1 cut(s) | 930 |
| Mox20I | TGGCCA | 1 cut(s) | 684 |
| Mph1103I | ATGCAT | 1 cut(s) | 1120 |
| MroXI | GAANNNNTTC | 2 cut(s) | 134, 582 |
| MscI | TGGCCA | 1 cut(s) | 684 |
| MseI | TTAA | 6 cut(s) | 483, 510, 768, 798, 953, 1046 |
| MslI | CAYNNNNRTG | 1 cut(s) | 923 |
| Msp20I | TGGCCA | 1 cut(s) | 684 |
| MspA1I | CMGCKG | 1 cut(s) | 1183 |
| MspI | CCGG | 1 cut(s) | 63 |
| MspR9I | CCNGG | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 63, 213 |
| NciI | CCSGG | 1 cut(s) | 63 |
| NcoI | CCATGG | 1 cut(s) | 477 |
| NdeI | CATATG | 1 cut(s) | 573 |
| NdeII | GATC | 3 cut(s) | 454, 865, 1165 |
| NlaIII | CATG | 4 cut(s) | 355, 481, 950, 1068 |
| NlaIV | GGNNCC | 1 cut(s) | 475 |
| NmuCI | GTSAC | 1 cut(s) | 280 |
| NsiI | ATGCAT | 1 cut(s) | 1120 |
| PdmI | GAANNNNTTC | 2 cut(s) | 134, 582 |
| PfeI | GAWTC | 4 cut(s) | 193, 358, 854, 928 |
| PflFI | GACNNNGTC | 1 cut(s) | 939 |
| PkrI | GCNGC | 2 cut(s) | 19, 1182 |
| PleI | GAGTC | 1 cut(s) | 930 |
| PpsI | GAGTC | 1 cut(s) | 930 |
| PsiI | TTATAA | 1 cut(s) | 603 |
| PspN4I | GGNNCC | 1 cut(s) | 475 |
| PstI | CTGCAG | 1 cut(s) | 1114 |
| PsuI | RGATCY | 1 cut(s) | 865 |
| PsyI | GACNNNGTC | 1 cut(s) | 939 |
| RseI | CAYNNNNRTG | 1 cut(s) | 923 |
| SaqAI | TTAA | 6 cut(s) | 483, 510, 768, 798, 953, 1046 |
| SatI | GCNGC | 2 cut(s) | 18, 1181 |
| Sau3AI | GATC | 3 cut(s) | 454, 865, 1165 |
| SchI | GAGTC | 1 cut(s) | 930 |
| ScrFI | CCNGG | 1 cut(s) | 63 |
| SduI | GDGCHC | 1 cut(s) | 476 |
| SfaNI | GCATC | 4 cut(s) | 44, 660, 1105, 1127 |
| SfcI | CTRYAG | 1 cut(s) | 1110 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 923 |
| SmlI | CTYRAG | 1 cut(s) | 1094 |
| SmoI | CTYRAG | 1 cut(s) | 1094 |
| Sse9I | AATT | 8 cut(s) | 26, 114, 201, 578, 761, 849, 957, 1130 |
| SsiI | CCGC | 3 cut(s) | 632, 858, 1181 |
| SspI | AATATT | 1 cut(s) | 802 |
| SspMI | CTAG | 2 cut(s) | 674, 843 |
| StyD4I | CCNGG | 1 cut(s) | 61 |
| StyI | CCWWGG | 1 cut(s) | 477 |
| TaaI | ACNGT | 4 cut(s) | 95, 410, 416, 922 |
| TaiI | ACGT | 2 cut(s) | 174, 1064 |
| TaqI | TCGA | 2 cut(s) | 90, 1151 |
| TasI | AATT | 8 cut(s) | 26, 114, 201, 578, 761, 849, 957, 1130 |
| TauI | GCSGC | 1 cut(s) | 1183 |
| TfiI | GAWTC | 4 cut(s) | 193, 358, 854, 928 |
| Tru1I | TTAA | 6 cut(s) | 483, 510, 768, 798, 953, 1046 |
| Tru9I | TTAA | 6 cut(s) | 483, 510, 768, 798, 953, 1046 |
| TscAI | CASTG | 2 cut(s) | 19, 925 |
| TseFI | GTSAC | 1 cut(s) | 280 |
| TseI | GCWGC | 1 cut(s) | 17 |
| Tsp45I | GTSAC | 1 cut(s) | 280 |
| TspDTI | ATGAA | 3 cut(s) | 135, 143, 261 |
| TspGWI | ACGGA | 1 cut(s) | 528 |
| TspRI | CASTG | 2 cut(s) | 19, 925 |
| Tth111I | GACNNNGTC | 1 cut(s) | 939 |
| XapI | RAATTY | 1 cut(s) | 201 |
| XmnI | GAANNNNTTC | 2 cut(s) | 134, 582 |
| XspI | CTAG | 2 cut(s) | 674, 843 |
| ZraI | GACGTC | 1 cut(s) | 1062 |
| Zsp2I | ATGCAT | 1 cut(s) | 1120 |