Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_C48 | PF02902 | 46 - 136 | 1.5e-06 | Ulp1 protease family, C-terminal catalytic domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 194 |
| AfaI | GTAC | 2 cut(s) | 324, 420 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 178 |
| AgsI | TTSAA | 4 cut(s) | 19, 92, 142, 268 |
| AjnI | CCWGG | 1 cut(s) | 334 |
| AluBI | AGCT | 3 cut(s) | 14, 112, 146 |
| AluI | AGCT | 3 cut(s) | 14, 112, 146 |
| Alw26I | GTCTC | 2 cut(s) | 230, 389 |
| AlwI | GGATC | 1 cut(s) | 194 |
| AoxI | GGCC | 1 cut(s) | 80 |
| ApeKI | GCWGC | 1 cut(s) | 11 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 263 |
| AsuC2I | CCSGG | 1 cut(s) | 318 |
| AsuHPI | GGTGA | 3 cut(s) | 38, 194, 256 |
| BbvI | GCAGC | 1 cut(s) | 23 |
| BciT130I | CCWGG | 1 cut(s) | 336 |
| BclI | TGATCA | 1 cut(s) | 246 |
| BcnI | CCSGG | 1 cut(s) | 318 |
| BcoDI | GTCTC | 2 cut(s) | 230, 389 |
| BfaI | CTAG | 2 cut(s) | 113, 147 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 2 cut(s) | 318, 336 |
| BmrFI | CCNGG | 2 cut(s) | 318, 336 |
| BmsI | GCATC | 1 cut(s) | 61 |
| BpuMI | CCSGG | 1 cut(s) | 318 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 178 |
| Bse1I | ACTGG | 2 cut(s) | 215, 283 |
| BseBI | CCWGG | 1 cut(s) | 336 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 2 cut(s) | 76, 397 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 178 |
| BseNI | ACTGG | 2 cut(s) | 215, 283 |
| BseRI | GAGGAG | 1 cut(s) | 53 |
| BseXI | GCAGC | 1 cut(s) | 23 |
| BshFI | GGCC | 1 cut(s) | 82 |
| BsiSI | CCGG | 1 cut(s) | 317 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 178 |
| BsmAI | GTCTC | 2 cut(s) | 230, 389 |
| BsnI | GGCC | 1 cut(s) | 82 |
| Bsp143I | GATC | 2 cut(s) | 199, 246 |
| BspANI | GGCC | 1 cut(s) | 82 |
| BspPI | GGATC | 1 cut(s) | 194 |
| BsrI | ACTGG | 2 cut(s) | 215, 283 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 2 cut(s) | 199, 246 |
| BssT1I | CCWWGG | 1 cut(s) | 414 |
| Bst2UI | CCWGG | 1 cut(s) | 336 |
| Bst4CI | ACNGT | 1 cut(s) | 98 |
| BstDEI | CTNAG | 2 cut(s) | 108, 196 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 176 |
| BstF5I | GGATG | 2 cut(s) | 76, 397 |
| BstKTI | GATC | 2 cut(s) | 202, 249 |
| BstMAI | GTCTC | 2 cut(s) | 230, 389 |
| BstMBI | GATC | 2 cut(s) | 199, 246 |
| BstNI | CCWGG | 1 cut(s) | 336 |
| BstNSI | RCATGY | 1 cut(s) | 425 |
| BstSCI | CCNGG | 2 cut(s) | 316, 334 |
| BstV1I | GCAGC | 1 cut(s) | 23 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BsuRI | GGCC | 1 cut(s) | 82 |
| BtgZI | GCGATG | 1 cut(s) | 269 |
| BtsCI | GGATG | 2 cut(s) | 76, 397 |
| BtsIMutI | CAGTG | 1 cut(s) | 103 |
| CsiI | ACCWGGT | 1 cut(s) | 334 |
| Csp6I | GTAC | 2 cut(s) | 323, 419 |
| CviAII | CATG | 2 cut(s) | 373, 422 |
| CviJI | RGCY | 5 cut(s) | 14, 82, 112, 146, 354 |
| CviKI_1 | RGCY | 5 cut(s) | 14, 82, 112, 146, 354 |
| CviQI | GTAC | 2 cut(s) | 323, 419 |
| DdeI | CTNAG | 2 cut(s) | 108, 196 |
| DpnI | GATC | 2 cut(s) | 201, 248 |
| DpnII | GATC | 2 cut(s) | 199, 246 |
| Eco130I | CCWWGG | 1 cut(s) | 414 |
| Eco147I | AGGCCT | 1 cut(s) | 82 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 176 |
| EcoRII | CCWGG | 1 cut(s) | 334 |
| EcoT14I | CCWWGG | 1 cut(s) | 414 |
| EcoT22I | ATGCAT | 1 cut(s) | 427 |
| ErhI | CCWWGG | 1 cut(s) | 414 |
| FaeI | CATG | 2 cut(s) | 376, 425 |
| FatI | CATG | 2 cut(s) | 372, 421 |
| FauNDI | CATATG | 1 cut(s) | 46 |
| FbaI | TGATCA | 1 cut(s) | 246 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 83, 404 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| FspBI | CTAG | 2 cut(s) | 113, 147 |
| GluI | GCNGC | 1 cut(s) | 12 |
| HaeIII | GGCC | 1 cut(s) | 82 |
| HapII | CCGG | 1 cut(s) | 317 |
| Hin1II | CATG | 2 cut(s) | 376, 425 |
| HincII | GTYRAC | 1 cut(s) | 289 |
| HindII | GTYRAC | 1 cut(s) | 289 |
| HinfI | GANTC | 2 cut(s) | 41, 116 |
| HpaI | GTTAAC | 1 cut(s) | 289 |
| HpaII | CCGG | 1 cut(s) | 317 |
| HphI | GGTGA | 3 cut(s) | 38, 194, 256 |
| Hpy166II | GTNNAC | 2 cut(s) | 101, 289 |
| Hpy8I | GTNNAC | 2 cut(s) | 101, 289 |
| HpyAV | CCTTC | 1 cut(s) | 274 |
| HpyCH4III | ACNGT | 1 cut(s) | 98 |
| HpyCH4V | TGCA | 2 cut(s) | 127, 425 |
| HpyF3I | CTNAG | 2 cut(s) | 108, 196 |
| Hsp92II | CATG | 2 cut(s) | 376, 425 |
| Ksp22I | TGATCA | 1 cut(s) | 246 |
| KspAI | GTTAAC | 1 cut(s) | 289 |
| Kzo9I | GATC | 2 cut(s) | 199, 246 |
| LpnPI | CCDG | 5 cut(s) | 228, 264, 321, 330, 348 |
| Lsp1109I | GCAGC | 1 cut(s) | 23 |
| LweI | GCATC | 1 cut(s) | 61 |
| MabI | ACCWGGT | 1 cut(s) | 334 |
| MaeI | CTAG | 2 cut(s) | 113, 147 |
| MalI | GATC | 2 cut(s) | 201, 248 |
| MboI | GATC | 2 cut(s) | 199, 246 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MlyI | GAGTC | 1 cut(s) | 50 |
| MmeI | TCCRAC | 1 cut(s) | 434 |
| MnlI | CCTC | 6 cut(s) | 16, 31, 61, 72, 172, 382 |
| Mph1103I | ATGCAT | 1 cut(s) | 427 |
| MroXI | GAANNNNTTC | 1 cut(s) | 263 |
| MseI | TTAA | 3 cut(s) | 54, 164, 288 |
| MspI | CCGG | 1 cut(s) | 317 |
| MspR9I | CCNGG | 2 cut(s) | 318, 336 |
| MvaI | CCWGG | 1 cut(s) | 336 |
| NciI | CCSGG | 1 cut(s) | 318 |
| NdeI | CATATG | 1 cut(s) | 46 |
| NdeII | GATC | 2 cut(s) | 199, 246 |
| NlaIII | CATG | 2 cut(s) | 376, 425 |
| NmeAIII | GCCGAG | 1 cut(s) | 100 |
| NsiI | ATGCAT | 1 cut(s) | 427 |
| NspI | RCATGY | 1 cut(s) | 425 |
| PceI | AGGCCT | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 1 cut(s) | 263 |
| PfeI | GAWTC | 1 cut(s) | 116 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PleI | GAGTC | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 1 cut(s) | 334 |
| PspGI | CCWGG | 1 cut(s) | 334 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| RsaI | GTAC | 2 cut(s) | 324, 420 |
| RsaNI | GTAC | 2 cut(s) | 323, 419 |
| SaqAI | TTAA | 3 cut(s) | 54, 164, 288 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau3AI | GATC | 2 cut(s) | 199, 246 |
| SchI | GAGTC | 1 cut(s) | 50 |
| ScrFI | CCNGG | 2 cut(s) | 318, 336 |
| SetI | ASST | 7 cut(s) | 16, 114, 148, 266, 328, 340, 420 |
| SexAI | ACCWGGT | 1 cut(s) | 334 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| SseBI | AGGCCT | 1 cut(s) | 82 |
| SspMI | CTAG | 2 cut(s) | 113, 147 |
| StuI | AGGCCT | 1 cut(s) | 82 |
| StyD4I | CCNGG | 2 cut(s) | 316, 334 |
| StyI | CCWWGG | 1 cut(s) | 414 |
| TaaI | ACNGT | 1 cut(s) | 98 |
| TfiI | GAWTC | 1 cut(s) | 116 |
| Tru1I | TTAA | 3 cut(s) | 54, 164, 288 |
| Tru9I | TTAA | 3 cut(s) | 54, 164, 288 |
| TscAI | CASTG | 1 cut(s) | 103 |
| TseI | GCWGC | 1 cut(s) | 11 |
| TspDTI | ATGAA | 5 cut(s) | 108, 122, 272, 389, 393 |
| TspGWI | ACGGA | 1 cut(s) | 192 |
| TspRI | CASTG | 1 cut(s) | 103 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 176 |
| XceI | RCATGY | 1 cut(s) | 425 |
| XmnI | GAANNNNTTC | 1 cut(s) | 263 |
| XspI | CTAG | 2 cut(s) | 113, 147 |
| Zsp2I | ATGCAT | 1 cut(s) | 427 |