pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 61 - 110 | 1.2e-08 | PPR repeat family |
| PPR_2 | PF13041 | 131 - 180 | 1.8e-08 | PPR repeat family |
| PPR_1 | PF12854 | 166 - 196 | 8.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 179 - 216 | 4.8e-06 | PPR repeat family |
| PPR_1 | PF12854 | 199 - 231 | 1.1e-09 | PPR repeat |
| PPR_2 | PF13041 | 202 - 251 | 5e-16 | PPR repeat family |
| PPR_1 | PF12854 | 233 - 266 | 7.4e-12 | PPR repeat |
| PPR_2 | PF13041 | 237 - 267 | 1.2e-07 | PPR repeat family |
| PPR | PF01535 | 240 - 267 | 4.1e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 7, 40, 193, 506 |
| AcsI | RAATTY | 2 cut(s) | 279, 368 |
| AcyI | GRCGYC | 1 cut(s) | 172 |
| AgsI | TTSAA | 9 cut(s) | 145, 167, 199, 229, 256, 376, 389, 409, 787 |
| AhlI | ACTAGT | 1 cut(s) | 523 |
| AluBI | AGCT | 1 cut(s) | 563 |
| AluI | AGCT | 1 cut(s) | 563 |
| Ama87I | CYCGRG | 1 cut(s) | 434 |
| ApeKI | GCWGC | 3 cut(s) | 23, 36, 321 |
| ApoI | RAATTY | 2 cut(s) | 279, 368 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 196, 228 |
| AseI | ATTAAT | 1 cut(s) | 315 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 162 |
| AvaI | CYCGRG | 1 cut(s) | 434 |
| BbvI | GCAGC | 3 cut(s) | 10, 48, 308 |
| BccI | CCATC | 1 cut(s) | 577 |
| BceAI | ACGGC | 2 cut(s) | 49, 439 |
| BciVI | GTATCC | 1 cut(s) | 643 |
| BcuI | ACTAGT | 1 cut(s) | 523 |
| BfaI | CTAG | 1 cut(s) | 524 |
| BfmI | CTRYAG | 1 cut(s) | 84 |
| BfuI | GTATCC | 1 cut(s) | 643 |
| BisI | GCNGC | 4 cut(s) | 24, 37, 40, 322 |
| BlsI | GCNGC | 4 cut(s) | 25, 38, 41, 323 |
| BmeT110I | CYCGRG | 1 cut(s) | 434 |
| BmiI | GGNNCC | 1 cut(s) | 52 |
| BmsI | GCATC | 3 cut(s) | 127, 442, 655 |
| BpuEI | CTTGAG | 1 cut(s) | 152 |
| BsaHI | GRCGYC | 1 cut(s) | 172 |
| BsaJI | CCNNGG | 1 cut(s) | 240 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 665, 695 |
| Bse1I | ACTGG | 1 cut(s) | 497 |
| BseDI | CCNNGG | 1 cut(s) | 240 |
| BseGI | GGATG | 1 cut(s) | 142 |
| BseNI | ACTGG | 1 cut(s) | 497 |
| BseXI | GCAGC | 3 cut(s) | 10, 48, 308 |
| BsiHKCI | CYCGRG | 1 cut(s) | 434 |
| BsoBI | CYCGRG | 1 cut(s) | 434 |
| BspACI | CCGC | 4 cut(s) | 7, 40, 193, 506 |
| BspLI | GGNNCC | 1 cut(s) | 52 |
| BsrI | ACTGG | 1 cut(s) | 497 |
| BssECI | CCNNGG | 1 cut(s) | 240 |
| BssNI | GRCGYC | 1 cut(s) | 172 |
| Bst4CI | ACNGT | 2 cut(s) | 104, 244 |
| Bst6I | CTCTTC | 1 cut(s) | 683 |
| BstACI | GRCGYC | 1 cut(s) | 172 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 1 cut(s) | 602 |
| BstDEI | CTNAG | 1 cut(s) | 361 |
| BstDSI | CCRYGG | 1 cut(s) | 240 |
| BstF5I | GGATG | 1 cut(s) | 142 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 20, 169, 178 |
| BstNSI | RCATGY | 1 cut(s) | 274 |
| BstSFI | CTRYAG | 1 cut(s) | 84 |
| BstV1I | GCAGC | 3 cut(s) | 10, 48, 308 |
| BsuI | GTATCC | 1 cut(s) | 643 |
| BtgI | CCRYGG | 1 cut(s) | 240 |
| BtsCI | GGATG | 1 cut(s) | 142 |
| Cac8I | GCNNGC | 1 cut(s) | 602 |
| CseI | GACGC | 1 cut(s) | 161 |
| CviAII | CATG | 5 cut(s) | 271, 395, 541, 610, 740 |
| CviJI | RGCY | 7 cut(s) | 39, 53, 426, 449, 499, 563, 604 |
| CviKI_1 | RGCY | 7 cut(s) | 39, 53, 426, 449, 499, 563, 604 |
| DdeI | CTNAG | 1 cut(s) | 361 |
| Eam1104I | CTCTTC | 1 cut(s) | 683 |
| EarI | CTCTTC | 1 cut(s) | 683 |
| Eco88I | CYCGRG | 1 cut(s) | 434 |
| EcoRI | GAATTC | 1 cut(s) | 279 |
| EcoT22I | ATGCAT | 1 cut(s) | 670 |
| FaeI | CATG | 5 cut(s) | 274, 398, 544, 613, 743 |
| FatI | CATG | 5 cut(s) | 270, 394, 540, 609, 739 |
| Fnu4HI | GCNGC | 4 cut(s) | 24, 37, 40, 322 |
| FokI | GGATG | 1 cut(s) | 149 |
| Fsp4HI | GCNGC | 4 cut(s) | 24, 37, 40, 322 |
| FspBI | CTAG | 1 cut(s) | 524 |
| GluI | GCNGC | 4 cut(s) | 24, 37, 40, 322 |
| HgaI | GACGC | 1 cut(s) | 161 |
| Hin1I | GRCGYC | 1 cut(s) | 172 |
| Hin1II | CATG | 5 cut(s) | 274, 398, 544, 613, 743 |
| HinfI | GANTC | 5 cut(s) | 45, 77, 463, 736, 770 |
| Hpy166II | GTNNAC | 1 cut(s) | 100 |
| Hpy188I | TCNGA | 3 cut(s) | 50, 303, 468 |
| Hpy188III | TCNNGA | 6 cut(s) | 74, 131, 276, 287, 400, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 100 |
| Hpy99I | CGWCG | 1 cut(s) | 158 |
| HpyAV | CCTTC | 4 cut(s) | 151, 192, 415, 584 |
| HpyCH4III | ACNGT | 2 cut(s) | 104, 244 |
| HpyCH4V | TGCA | 5 cut(s) | 540, 600, 645, 668, 750 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 20, 169, 178 |
| HpyF3I | CTNAG | 1 cut(s) | 361 |
| Hsp92I | GRCGYC | 1 cut(s) | 172 |
| Hsp92II | CATG | 5 cut(s) | 274, 398, 544, 613, 743 |
| LmnI | GCTCC | 2 cut(s) | 50, 560 |
| LpnPI | CCDG | 6 cut(s) | 67, 261, 300, 478, 723, 742 |
| Lsp1109I | GCAGC | 3 cut(s) | 10, 48, 308 |
| LweI | GCATC | 3 cut(s) | 127, 442, 655 |
| MaeI | CTAG | 1 cut(s) | 524 |
| MaeIII | GTNAC | 5 cut(s) | 104, 397, 488, 508, 548 |
| MboII | GAAGA | 4 cut(s) | 364, 422, 599, 670 |
| MfeI | CAATTG | 1 cut(s) | 569 |
| MluCI | AATT | 8 cut(s) | 279, 316, 368, 377, 569, 657, 702, 752 |
| MlyI | GAGTC | 2 cut(s) | 39, 71 |
| MnlI | CCTC | 6 cut(s) | 50, 127, 402, 430, 686, 792 |
| Mph1103I | ATGCAT | 1 cut(s) | 670 |
| MroXI | GAANNNNTTC | 1 cut(s) | 162 |
| MseI | TTAA | 5 cut(s) | 315, 380, 576, 656, 671 |
| MunI | CAATTG | 1 cut(s) | 569 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 20, 169, 178 |
| NlaIII | CATG | 5 cut(s) | 274, 398, 544, 613, 743 |
| NlaIV | GGNNCC | 1 cut(s) | 52 |
| NmuCI | GTSAC | 1 cut(s) | 397 |
| NsiI | ATGCAT | 1 cut(s) | 670 |
| NspI | RCATGY | 1 cut(s) | 274 |
| PaeR7I | CTCGAG | 1 cut(s) | 434 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 248 |
| PdmI | GAANNNNTTC | 1 cut(s) | 162 |
| PfeI | GAWTC | 3 cut(s) | 463, 736, 770 |
| PkrI | GCNGC | 4 cut(s) | 25, 38, 41, 323 |
| PleI | GAGTC | 2 cut(s) | 39, 71 |
| PpsI | GAGTC | 2 cut(s) | 39, 71 |
| PshBI | ATTAAT | 1 cut(s) | 315 |
| PspN4I | GGNNCC | 1 cut(s) | 52 |
| SaqAI | TTAA | 5 cut(s) | 315, 380, 576, 656, 671 |
| SatI | GCNGC | 4 cut(s) | 24, 37, 40, 322 |
| SchI | GAGTC | 2 cut(s) | 39, 71 |
| SetI | ASST | 8 cut(s) | 61, 394, 407, 550, 565, 678, 731, 803 |
| SfaNI | GCATC | 3 cut(s) | 127, 442, 655 |
| SfcI | CTRYAG | 1 cut(s) | 84 |
| Sfr274I | CTCGAG | 1 cut(s) | 434 |
| SlaI | CTCGAG | 1 cut(s) | 434 |
| SmlI | CTYRAG | 2 cut(s) | 131, 434 |
| SmoI | CTYRAG | 2 cut(s) | 131, 434 |
| SpeI | ACTAGT | 1 cut(s) | 523 |
| Sse9I | AATT | 8 cut(s) | 279, 316, 368, 377, 569, 657, 702, 752 |
| SsiI | CCGC | 4 cut(s) | 7, 40, 193, 506 |
| SspI | AATATT | 1 cut(s) | 207 |
| SspMI | CTAG | 1 cut(s) | 524 |
| TaaI | ACNGT | 2 cut(s) | 104, 244 |
| TaqI | TCGA | 2 cut(s) | 153, 435 |
| TasI | AATT | 8 cut(s) | 279, 316, 368, 377, 569, 657, 702, 752 |
| TauI | GCSGC | 1 cut(s) | 42 |
| TfiI | GAWTC | 3 cut(s) | 463, 736, 770 |
| Tru1I | TTAA | 5 cut(s) | 315, 380, 576, 656, 671 |
| Tru9I | TTAA | 5 cut(s) | 315, 380, 576, 656, 671 |
| TseFI | GTSAC | 1 cut(s) | 397 |
| TseI | GCWGC | 3 cut(s) | 23, 36, 321 |
| Tsp45I | GTSAC | 1 cut(s) | 397 |
| TspDTI | ATGAA | 4 cut(s) | 110, 557, 728, 804 |
| VspI | ATTAAT | 1 cut(s) | 315 |
| XapI | RAATTY | 2 cut(s) | 279, 368 |
| XceI | RCATGY | 1 cut(s) | 274 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 344 |
| XhoI | CTCGAG | 1 cut(s) | 434 |
| XmnI | GAANNNNTTC | 1 cut(s) | 162 |
| XspI | CTAG | 1 cut(s) | 524 |
| Zsp2I | ATGCAT | 1 cut(s) | 670 |