Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 109 - 155 | 7.8e-09 | PPR repeat family |
| PPR_3 | PF13812 | 135 - 190 | 5.9e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 140 - 172 | 8.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 143 - 192 | 1e-13 | PPR repeat family |
| PPR_1 | PF12854 | 177 - 208 | 1.8e-10 | PPR repeat |
| PPR_3 | PF13812 | 178 - 225 | 1.3e-11 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 179 - 228 | 5.8e-16 | PPR repeat family |
| PPR_1 | PF12854 | 210 - 242 | 2e-12 | PPR repeat |
| PPR_2 | PF13041 | 215 - 263 | 1.3e-15 | PPR repeat family |
| PPR | PF01535 | 217 - 246 | 8.7e-06 | PPR repeat |
| MRP-S27 | PF10037 | 218 - 320 | 4.9e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_3 | PF13812 | 238 - 296 | 8.2e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 247 - 278 | 3.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 249 - 298 | 2.7e-19 | PPR repeat family |
| PPR | PF01535 | 252 - 282 | 5.1e-06 | PPR repeat |
| PPR_1 | PF12854 | 280 - 312 | 2.7e-10 | PPR repeat |
| PPR_2 | PF13041 | 289 - 332 | 6.5e-11 | PPR repeat family |
| PPR_1 | PF12854 | 316 - 347 | 4.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 319 - 351 | 1.6e-06 | PPR repeat family |
| PPR | PF01535 | 322 - 351 | 2.6e-08 | PPR repeat |
| PPR_long | PF17177 | 339 - 469 | 5.2e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 356 - 403 | 4.1e-15 | PPR repeat family |
| PPR | PF01535 | 358 - 383 | 2.2e-06 | PPR repeat |
| PPR_1 | PF12854 | 360 - 382 | 7.2e-06 | PPR repeat |
| TPR_24 | PF23276 | 375 - 484 | 9.6e-10 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 386 - 418 | 2.4e-15 | PPR repeat |
| PPR_2 | PF13041 | 389 - 438 | 3.3e-18 | PPR repeat family |
| PPR | PF01535 | 392 - 421 | 1.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 424 - 473 | 6.1e-11 | PPR repeat family |
| PPR_3 | PF13812 | 448 - 503 | 9.5e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 460 - 508 | 3.3e-15 | PPR repeat family |
| PPR_1 | PF12854 | 490 - 522 | 1.1e-12 | PPR repeat |
| PPR_2 | PF13041 | 494 - 542 | 5.5e-16 | PPR repeat family |
| PPR | PF01535 | 498 - 527 | 5.8e-09 | PPR repeat |
| PPR_1 | PF12854 | 525 - 558 | 8.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 533 - 576 | 1.7e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 42, 51, 1000, 1211, 1489 |
| AclWI | GGATC | 1 cut(s) | 1739 |
| AcsI | RAATTY | 3 cut(s) | 404, 1218, 1428 |
| AcuI | CTGAAG | 1 cut(s) | 1460 |
| AfaI | GTAC | 1 cut(s) | 858 |
| AhlI | ACTAGT | 1 cut(s) | 1159 |
| AjiI | CACGTC | 1 cut(s) | 931 |
| AjnI | CCWGG | 1 cut(s) | 1747 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1564, 1596 |
| AluBI | AGCT | 4 cut(s) | 387, 809, 1267, 1421 |
| AluI | AGCT | 4 cut(s) | 387, 809, 1267, 1421 |
| Alw26I | GTCTC | 3 cut(s) | 680, 1631, 1648 |
| AlwI | GGATC | 1 cut(s) | 1739 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 678 |
| Ama87I | CYCGRG | 1 cut(s) | 470 |
| AoxI | GGCC | 3 cut(s) | 138, 793, 1303 |
| ApeKI | GCWGC | 8 cut(s) | 45, 48, 107, 110, 113, 491, 596, 1318 |
| ApoI | RAATTY | 3 cut(s) | 404, 1218, 1428 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 257, 270, 319, 713, 1161 |
| AspS9I | GGNCC | 1 cut(s) | 1596 |
| AsuHPI | GGTGA | 4 cut(s) | 158, 430, 436, 844 |
| AvaI | CYCGRG | 1 cut(s) | 470 |
| AvaII | GGWCC | 1 cut(s) | 1596 |
| BbsI | GAAGAC | 2 cut(s) | 413, 427 |
| BbvCI | CCTCAGC | 1 cut(s) | 486 |
| BbvI | GCAGC | 8 cut(s) | 57, 60, 94, 97, 100, 503, 583, 1330 |
| BccI | CCATC | 7 cut(s) | 178, 222, 613, 671, 895, 1295, 1348 |
| BceAI | ACGGC | 3 cut(s) | 475, 1066, 1347 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 197, 231 |
| BciT130I | CCWGG | 1 cut(s) | 1749 |
| BcoDI | GTCTC | 3 cut(s) | 680, 1631, 1648 |
| BcuI | ACTAGT | 1 cut(s) | 1159 |
| BfaI | CTAG | 2 cut(s) | 150, 1160 |
| BfmI | CTRYAG | 2 cut(s) | 655, 1689 |
| BglII | AGATCT | 1 cut(s) | 1444 |
| BisI | GCNGC | 9 cut(s) | 43, 46, 49, 108, 111, 114, 492, 597, 1319 |
| BlsI | GCNGC | 9 cut(s) | 44, 47, 50, 109, 112, 115, 493, 598, 1320 |
| Bme1390I | CCNGG | 1 cut(s) | 1749 |
| Bme18I | GGWCC | 1 cut(s) | 1596 |
| BmeT110I | CYCGRG | 1 cut(s) | 470 |
| BmgBI | CACGTC | 1 cut(s) | 931 |
| BmgT120I | GGNCC | 1 cut(s) | 1596 |
| BmiI | GGNNCC | 1 cut(s) | 1054 |
| BmrFI | CCNGG | 1 cut(s) | 1749 |
| BmsI | GCATC | 6 cut(s) | 235, 871, 1156, 1239, 1684, 1706 |
| BpiI | GAAGAC | 2 cut(s) | 413, 427 |
| BpmI | CTGGAG | 3 cut(s) | 729, 1443, 1569 |
| Bpu10I | CCTNAGC | 1 cut(s) | 486 |
| BpuEI | CTTGAG | 1 cut(s) | 260 |
| BsaBI | GATNNNNATC | 1 cut(s) | 314 |
| BsaJI | CCNNGG | 3 cut(s) | 1056, 1615, 1643 |
| Bse1I | ACTGG | 1 cut(s) | 796 |
| Bse3DI | GCAATG | 1 cut(s) | 711 |
| Bse8I | GATNNNNATC | 1 cut(s) | 314 |
| BseBI | CCWGG | 1 cut(s) | 1749 |
| BseDI | CCNNGG | 3 cut(s) | 1056, 1615, 1643 |
| BseGI | GGATG | 5 cut(s) | 170, 250, 544, 624, 906 |
| BseJI | GATNNNNATC | 1 cut(s) | 314 |
| BseMI | GCAATG | 1 cut(s) | 711 |
| BseMII | CTCAG | 4 cut(s) | 477, 732, 1236, 1547 |
| BseNI | ACTGG | 1 cut(s) | 796 |
| BseRI | GAGGAG | 1 cut(s) | 78 |
| BseXI | GCAGC | 8 cut(s) | 57, 60, 94, 97, 100, 503, 583, 1330 |
| BshFI | GGCC | 3 cut(s) | 140, 795, 1305 |
| BsiHKCI | CYCGRG | 1 cut(s) | 470 |
| BsiSI | CCGG | 1 cut(s) | 536 |
| BsmAI | GTCTC | 3 cut(s) | 680, 1631, 1648 |
| BsnI | GGCC | 3 cut(s) | 140, 795, 1305 |
| BsoBI | CYCGRG | 1 cut(s) | 470 |
| Bsp1407I | TGTACA | 1 cut(s) | 856 |
| Bsp143I | GATC | 4 cut(s) | 235, 309, 1444, 1744 |
| Bsp19I | CCATGG | 1 cut(s) | 1056 |
| BspACI | CCGC | 5 cut(s) | 42, 51, 1000, 1211, 1489 |
| BspANI | GGCC | 3 cut(s) | 140, 795, 1305 |
| BspCNI | CTCAG | 4 cut(s) | 478, 731, 1237, 1548 |
| BspHI | TCATGA | 1 cut(s) | 1038 |
| BspLI | GGNNCC | 1 cut(s) | 1054 |
| BspMAI | CTGCAG | 1 cut(s) | 1693 |
| BspPI | GGATC | 1 cut(s) | 1739 |
| BsrDI | GCAATG | 1 cut(s) | 711 |
| BsrGI | TGTACA | 1 cut(s) | 856 |
| BsrI | ACTGG | 1 cut(s) | 796 |
| BssECI | CCNNGG | 3 cut(s) | 1056, 1615, 1643 |
| BssMI | GATC | 4 cut(s) | 235, 309, 1444, 1744 |
| BssT1I | CCWWGG | 2 cut(s) | 1056, 1643 |
| Bst2UI | CCWGG | 1 cut(s) | 1749 |
| Bst4CI | ACNGT | 9 cut(s) | 362, 632, 674, 989, 995, 1174, 1236, 1394, 1741 |
| Bst6I | CTCTTC | 3 cut(s) | 55, 719, 1454 |
| BstAUI | TGTACA | 1 cut(s) | 856 |
| BstDEI | CTNAG | 5 cut(s) | 486, 611, 718, 1245, 1556 |
| BstDSI | CCRYGG | 1 cut(s) | 1056 |
| BstF5I | GGATG | 5 cut(s) | 170, 250, 544, 624, 906 |
| BstKTI | GATC | 4 cut(s) | 238, 312, 1447, 1747 |
| BstMAI | GTCTC | 3 cut(s) | 680, 1631, 1648 |
| BstMBI | GATC | 4 cut(s) | 235, 309, 1444, 1744 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 48, 54, 113, 277, 491, 541, 792, 1486 |
| BstNI | CCWGG | 1 cut(s) | 1749 |
| BstSCI | CCNGG | 1 cut(s) | 1747 |
| BstSFI | CTRYAG | 2 cut(s) | 655, 1689 |
| BstV1I | GCAGC | 8 cut(s) | 57, 60, 94, 97, 100, 503, 583, 1330 |
| BstV2I | GAAGAC | 2 cut(s) | 413, 427 |
| BstX2I | RGATCY | 2 cut(s) | 1444, 1744 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 187, 922, 1593 |
| BstYI | RGATCY | 2 cut(s) | 1444, 1744 |
| BsuRI | GGCC | 3 cut(s) | 140, 795, 1305 |
| BtgI | CCRYGG | 1 cut(s) | 1056 |
| BtrI | CACGTC | 1 cut(s) | 931 |
| BtsCI | GGATG | 5 cut(s) | 170, 250, 544, 624, 906 |
| BtsIMutI | CAGTG | 2 cut(s) | 803, 1399 |
| CaiI | CAGNNNCTG | 1 cut(s) | 678 |
| CciI | TCATGA | 1 cut(s) | 1038 |
| Cfr13I | GGNCC | 1 cut(s) | 1596 |
| Csp6I | GTAC | 1 cut(s) | 857 |
| CviAII | CATG | 8 cut(s) | 187, 577, 907, 1039, 1057, 1511, 1526, 1761 |
| CviQI | GTAC | 1 cut(s) | 857 |
| DdeI | CTNAG | 5 cut(s) | 486, 611, 718, 1245, 1556 |
| DpnI | GATC | 4 cut(s) | 237, 311, 1446, 1746 |
| DpnII | GATC | 4 cut(s) | 235, 309, 1444, 1744 |
| DraI | TTTAAA | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 3 cut(s) | 55, 719, 1454 |
| EarI | CTCTTC | 3 cut(s) | 55, 719, 1454 |
| Eco130I | CCWWGG | 2 cut(s) | 1056, 1643 |
| Eco47I | GGWCC | 1 cut(s) | 1596 |
| Eco57I | CTGAAG | 1 cut(s) | 1460 |
| Eco88I | CYCGRG | 1 cut(s) | 470 |
| EcoRI | GAATTC | 1 cut(s) | 1218 |
| EcoRII | CCWGG | 1 cut(s) | 1747 |
| EcoT14I | CCWWGG | 2 cut(s) | 1056, 1643 |
| EcoT22I | ATGCAT | 3 cut(s) | 250, 1149, 1699 |
| ErhI | CCWWGG | 2 cut(s) | 1056, 1643 |
| FaeI | CATG | 8 cut(s) | 190, 580, 910, 1042, 1060, 1514, 1529, 1764 |
| FatI | CATG | 8 cut(s) | 186, 576, 906, 1038, 1056, 1510, 1525, 1760 |
| FauI | CCCGC | 2 cut(s) | 993, 1204 |
| FauNDI | CATATG | 1 cut(s) | 1152 |
| Fnu4HI | GCNGC | 9 cut(s) | 43, 46, 49, 108, 111, 114, 492, 597, 1319 |
| FokI | GGATG | 5 cut(s) | 157, 257, 551, 631, 913 |
| Fsp4HI | GCNGC | 9 cut(s) | 43, 46, 49, 108, 111, 114, 492, 597, 1319 |
| FspBI | CTAG | 2 cut(s) | 150, 1160 |
| GluI | GCNGC | 9 cut(s) | 43, 46, 49, 108, 111, 114, 492, 597, 1319 |
| GsuI | CTGGAG | 3 cut(s) | 729, 1443, 1569 |
| HaeIII | GGCC | 3 cut(s) | 140, 795, 1305 |
| HapII | CCGG | 1 cut(s) | 536 |
| Hin1II | CATG | 8 cut(s) | 190, 580, 910, 1042, 1060, 1514, 1529, 1764 |
| HincII | GTYRAC | 1 cut(s) | 928 |
| HindII | GTYRAC | 1 cut(s) | 928 |
| HinfI | GANTC | 7 cut(s) | 155, 315, 475, 772, 937, 1507, 1772 |
| HpaII | CCGG | 1 cut(s) | 536 |
| HphI | GGTGA | 4 cut(s) | 158, 430, 436, 844 |
| Hpy166II | GTNNAC | 3 cut(s) | 859, 928, 1390 |
| Hpy188I | TCNGA | 7 cut(s) | 235, 309, 314, 721, 1246, 1616, 1781 |
| Hpy8I | GTNNAC | 3 cut(s) | 859, 928, 1390 |
| HpyAV | CCTTC | 7 cut(s) | 33, 247, 451, 874, 1105, 1400, 1726 |
| HpyCH4III | ACNGT | 9 cut(s) | 362, 632, 674, 989, 995, 1174, 1236, 1394, 1741 |
| HpyCH4IV | ACGT | 3 cut(s) | 736, 750, 930 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 48, 54, 113, 277, 491, 541, 792, 1486 |
| HpyF3I | CTNAG | 5 cut(s) | 486, 611, 718, 1245, 1556 |
| HpySE526I | ACGT | 3 cut(s) | 736, 750, 930 |
| Hsp92II | CATG | 8 cut(s) | 190, 580, 910, 1042, 1060, 1514, 1529, 1764 |
| Kzo9I | GATC | 4 cut(s) | 235, 309, 1444, 1744 |
| LmnI | GCTCC | 3 cut(s) | 91, 748, 1058 |
| Lsp1109I | GCAGC | 8 cut(s) | 57, 60, 94, 97, 100, 503, 583, 1330 |
| LweI | GCATC | 6 cut(s) | 235, 871, 1156, 1239, 1684, 1706 |
| MaeI | CTAG | 2 cut(s) | 150, 1160 |
| MaeII | ACGT | 3 cut(s) | 736, 750, 930 |
| MaeIII | GTNAC | 6 cut(s) | 685, 754, 989, 1076, 1174, 1310 |
| MalI | GATC | 4 cut(s) | 237, 311, 1446, 1746 |
| MboI | GATC | 4 cut(s) | 235, 309, 1444, 1744 |
| MboII | GAAGA | 9 cut(s) | 18, 68, 72, 413, 427, 635, 706, 1227, 1441 |
| MflI | RGATCY | 2 cut(s) | 1444, 1744 |
| MmeI | TCCRAC | 1 cut(s) | 1574 |
| Mph1103I | ATGCAT | 3 cut(s) | 250, 1149, 1699 |
| MroXI | GAANNNNTTC | 5 cut(s) | 257, 270, 319, 713, 1161 |
| MseI | TTAA | 7 cut(s) | 411, 669, 1089, 1347, 1377, 1532, 1767 |
| MspA1I | CMGCKG | 1 cut(s) | 51 |
| MspI | CCGG | 1 cut(s) | 536 |
| MspR9I | CCNGG | 1 cut(s) | 1749 |
| MvaI | CCWGG | 1 cut(s) | 1749 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 48, 54, 113, 277, 491, 541, 792, 1486 |
| NcoI | CCATGG | 1 cut(s) | 1056 |
| NdeI | CATATG | 1 cut(s) | 1152 |
| NdeII | GATC | 4 cut(s) | 235, 309, 1444, 1744 |
| NlaIII | CATG | 8 cut(s) | 190, 580, 910, 1042, 1060, 1514, 1529, 1764 |
| NlaIV | GGNNCC | 1 cut(s) | 1054 |
| NsiI | ATGCAT | 3 cut(s) | 250, 1149, 1699 |
| PaeR7I | CTCGAG | 1 cut(s) | 470 |
| PagI | TCATGA | 1 cut(s) | 1038 |
| PdmI | GAANNNNTTC | 5 cut(s) | 257, 270, 319, 713, 1161 |
| PfeI | GAWTC | 7 cut(s) | 155, 315, 475, 772, 937, 1507, 1772 |
| PflFI | GACNNNGTC | 1 cut(s) | 1518 |
| PkrI | GCNGC | 9 cut(s) | 44, 47, 50, 109, 112, 115, 493, 598, 1320 |
| Psp6I | CCWGG | 1 cut(s) | 1747 |
| PspGI | CCWGG | 1 cut(s) | 1747 |
| PspN4I | GGNNCC | 1 cut(s) | 1054 |
| PspPI | GGNCC | 1 cut(s) | 1596 |
| PstI | CTGCAG | 1 cut(s) | 1693 |
| PstNI | CAGNNNCTG | 1 cut(s) | 678 |
| PsuI | RGATCY | 2 cut(s) | 1444, 1744 |
| PsyI | GACNNNGTC | 1 cut(s) | 1518 |
| RsaI | GTAC | 1 cut(s) | 858 |
| RsaNI | GTAC | 1 cut(s) | 857 |
| SaqAI | TTAA | 7 cut(s) | 411, 669, 1089, 1347, 1377, 1532, 1767 |
| SatI | GCNGC | 9 cut(s) | 43, 46, 49, 108, 111, 114, 492, 597, 1319 |
| Sau3AI | GATC | 4 cut(s) | 235, 309, 1444, 1744 |
| Sau96I | GGNCC | 1 cut(s) | 1596 |
| ScrFI | CCNGG | 1 cut(s) | 1749 |
| SfaNI | GCATC | 6 cut(s) | 235, 871, 1156, 1239, 1684, 1706 |
| SfcI | CTRYAG | 2 cut(s) | 655, 1689 |
| Sfr274I | CTCGAG | 1 cut(s) | 470 |
| SinI | GGWCC | 1 cut(s) | 1596 |
| SlaI | CTCGAG | 1 cut(s) | 470 |
| SmlI | CTYRAG | 2 cut(s) | 239, 470 |
| SmoI | CTYRAG | 2 cut(s) | 239, 470 |
| SpeI | ACTAGT | 1 cut(s) | 1159 |
| SsiI | CCGC | 5 cut(s) | 42, 51, 1000, 1211, 1489 |
| SspI | AATATT | 2 cut(s) | 1276, 1381 |
| SspMI | CTAG | 2 cut(s) | 150, 1160 |
| StyD4I | CCNGG | 1 cut(s) | 1747 |
| StyI | CCWWGG | 2 cut(s) | 1056, 1643 |
| TaaI | ACNGT | 9 cut(s) | 362, 632, 674, 989, 995, 1174, 1236, 1394, 1741 |
| TaiI | ACGT | 3 cut(s) | 739, 753, 933 |
| TaqI | TCGA | 7 cut(s) | 203, 217, 261, 471, 478, 1116, 1730 |
| TatI | WGTACW | 1 cut(s) | 856 |
| TauI | GCSGC | 1 cut(s) | 45 |
| TfiI | GAWTC | 7 cut(s) | 155, 315, 475, 772, 937, 1507, 1772 |
| Tru1I | TTAA | 7 cut(s) | 411, 669, 1089, 1347, 1377, 1532, 1767 |
| Tru9I | TTAA | 7 cut(s) | 411, 669, 1089, 1347, 1377, 1532, 1767 |
| TscAI | CASTG | 2 cut(s) | 803, 1399 |
| TseI | GCWGC | 8 cut(s) | 45, 48, 107, 110, 113, 491, 596, 1318 |
| TspDTI | ATGAA | 9 cut(s) | 113, 175, 188, 279, 714, 722, 836, 840, 1499 |
| TspGWI | ACGGA | 1 cut(s) | 1107 |
| TspRI | CASTG | 2 cut(s) | 803, 1399 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1518 |
| VpaK11BI | GGWCC | 1 cut(s) | 1596 |
| XapI | RAATTY | 3 cut(s) | 404, 1218, 1428 |
| XbaI | TCTAGA | 1 cut(s) | 149 |
| XhoI | CTCGAG | 1 cut(s) | 470 |
| XmnI | GAANNNNTTC | 5 cut(s) | 257, 270, 319, 713, 1161 |
| XspI | CTAG | 2 cut(s) | 150, 1160 |
| Zsp2I | ATGCAT | 3 cut(s) | 250, 1149, 1699 |