Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 4 - 37 | 3e-09 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 2.5e-11 | PPR repeat family |
| PPR_3 | PF13812 | 33 - 90 | 6.8e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 40 - 71 | 1.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 1.1e-14 | PPR repeat family |
| PPR | PF01535 | 46 - 76 | 1.5e-07 | PPR repeat |
| PPR_3 | PF13812 | 67 - 124 | 6.2e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 74 - 106 | 6.8e-10 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 2.1e-19 | PPR repeat family |
| PPR | PF01535 | 82 - 111 | 3.7e-09 | PPR repeat |
| PPR_long | PF17177 | 93 - 192 | 2.4e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 102 - 158 | 5.2e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 110 - 142 | 1.6e-16 | PPR repeat |
| PPR_2 | PF13041 | 113 - 162 | 1.2e-19 | PPR repeat family |
| PPR | PF01535 | 116 - 145 | 4.8e-09 | PPR repeat |
| PPR_3 | PF13812 | 136 - 193 | 7.1e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 145 - 177 | 1.9e-09 | PPR repeat |
| PPR | PF01535 | 152 - 180 | 5.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 155 - 196 | 1.8e-12 | PPR repeat family |
| PPR_1 | PF12854 | 181 - 209 | 4.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 183 - 232 | 5.8e-15 | PPR repeat family |
| PPR_3 | PF13812 | 208 - 263 | 2.4e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 214 - 247 | 4.5e-12 | PPR repeat |
| PPR | PF01535 | 222 - 251 | 1.7e-08 | PPR repeat |
| PPR_2 | PF13041 | 226 - 266 | 3.5e-13 | PPR repeat family |
| PPR_1 | PF12854 | 249 - 282 | 4.3e-09 | PPR repeat |
| PPR_2 | PF13041 | 256 - 298 | 1.6e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 610 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 841 |
| AccBSI | CCGCTC | 1 cut(s) | 852 |
| AccI | GTMKAC | 1 cut(s) | 51 |
| AciI | CCGC | 3 cut(s) | 716, 852, 878 |
| AclWI | GGATC | 4 cut(s) | 539, 552, 624, 911 |
| AcoI | YGGCCR | 1 cut(s) | 433 |
| AcsI | RAATTY | 1 cut(s) | 721 |
| AcuI | CTGAAG | 2 cut(s) | 22, 632 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 841 |
| AgsI | TTSAA | 6 cut(s) | 101, 452, 512, 578, 605, 799 |
| AluBI | AGCT | 3 cut(s) | 409, 428, 652 |
| AluI | AGCT | 3 cut(s) | 409, 428, 652 |
| Alw21I | GWGCWC | 1 cut(s) | 33 |
| Alw26I | GTCTC | 1 cut(s) | 820 |
| Alw44I | GTGCAC | 1 cut(s) | 29 |
| AlwI | GGATC | 4 cut(s) | 539, 552, 624, 911 |
| AoxI | GGCC | 2 cut(s) | 433, 700 |
| ApaLI | GTGCAC | 1 cut(s) | 29 |
| ApoI | RAATTY | 1 cut(s) | 721 |
| AspLEI | GCGC | 1 cut(s) | 611 |
| AsuC2I | CCSGG | 1 cut(s) | 788 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 335, 747 |
| BaeGI | GKGCMC | 1 cut(s) | 33 |
| BalI | TGGCCA | 1 cut(s) | 435 |
| BamHI | GGATCC | 1 cut(s) | 544 |
| Bbv12I | GWGCWC | 1 cut(s) | 33 |
| BccI | CCATC | 3 cut(s) | 152, 362, 467 |
| BceAI | ACGGC | 1 cut(s) | 280 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 208, 242 |
| BcnI | CCSGG | 1 cut(s) | 788 |
| BcoDI | GTCTC | 1 cut(s) | 820 |
| BfaI | CTAG | 1 cut(s) | 470 |
| BfmI | CTRYAG | 1 cut(s) | 861 |
| BlpI | GCTNAGC | 1 cut(s) | 215 |
| Bme1390I | CCNGG | 1 cut(s) | 788 |
| BmiI | GGNNCC | 2 cut(s) | 336, 546 |
| BmrFI | CCNGG | 1 cut(s) | 788 |
| BmsI | GCATC | 4 cut(s) | 291, 388, 411, 856 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 215 |
| BpuMI | CCSGG | 1 cut(s) | 788 |
| BsaBI | GATNNNNATC | 1 cut(s) | 915 |
| BsaJI | CCNNGG | 1 cut(s) | 787 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 841 |
| Bse118I | RCCGGY | 1 cut(s) | 698 |
| Bse8I | GATNNNNATC | 1 cut(s) | 915 |
| BseDI | CCNNGG | 1 cut(s) | 787 |
| BseGI | GGATG | 1 cut(s) | 163 |
| BseJI | GATNNNNATC | 1 cut(s) | 915 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 841 |
| BseRI | GAGGAG | 1 cut(s) | 189 |
| BseSI | GKGCMC | 1 cut(s) | 33 |
| BshFI | GGCC | 2 cut(s) | 435, 702 |
| BsiHKAI | GWGCWC | 1 cut(s) | 33 |
| BsiSI | CCGG | 2 cut(s) | 699, 787 |
| BslFI | GGGAC | 1 cut(s) | 657 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 841 |
| BsmAI | GTCTC | 1 cut(s) | 820 |
| BsmFI | GGGAC | 1 cut(s) | 657 |
| BsmI | GAATGC | 1 cut(s) | 611 |
| BsnI | GGCC | 2 cut(s) | 435, 702 |
| Bsp1286I | GDGCHC | 1 cut(s) | 33 |
| Bsp143I | GATC | 5 cut(s) | 205, 544, 616, 916, 943 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 215 |
| BspACI | CCGC | 3 cut(s) | 716, 852, 878 |
| BspANI | GGCC | 2 cut(s) | 435, 702 |
| BspLI | GGNNCC | 2 cut(s) | 336, 546 |
| BspMAI | CTGCAG | 1 cut(s) | 865 |
| BspPI | GGATC | 4 cut(s) | 539, 552, 624, 911 |
| BsrBI | CCGCTC | 1 cut(s) | 852 |
| BsrFI | RCCGGY | 1 cut(s) | 698 |
| BssAI | RCCGGY | 1 cut(s) | 698 |
| BssECI | CCNNGG | 1 cut(s) | 787 |
| BssMI | GATC | 5 cut(s) | 205, 544, 616, 916, 943 |
| Bst4CI | ACNGT | 3 cut(s) | 346, 629, 936 |
| BstC8I | GCNNGC | 3 cut(s) | 380, 426, 700 |
| BstDEI | CTNAG | 2 cut(s) | 215, 501 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 62 |
| BstF5I | GGATG | 1 cut(s) | 163 |
| BstHHI | GCGC | 1 cut(s) | 611 |
| BstKTI | GATC | 5 cut(s) | 208, 547, 619, 919, 946 |
| BstMAI | GTCTC | 1 cut(s) | 820 |
| BstMBI | GATC | 5 cut(s) | 205, 544, 616, 916, 943 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 875 |
| BstSCI | CCNGG | 1 cut(s) | 786 |
| BstSFI | CTRYAG | 1 cut(s) | 861 |
| BstSLI | GKGCMC | 1 cut(s) | 33 |
| BstX2I | RGATCY | 3 cut(s) | 544, 616, 916 |
| BstYI | RGATCY | 3 cut(s) | 544, 616, 916 |
| BsuRI | GGCC | 2 cut(s) | 435, 702 |
| BtgZI | GCGATG | 1 cut(s) | 836 |
| BtsCI | GGATG | 1 cut(s) | 163 |
| BtsI | GCAGTG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 4 cut(s) | 46, 303, 359, 932 |
| Cac8I | GCNNGC | 3 cut(s) | 380, 426, 700 |
| CfoI | GCGC | 1 cut(s) | 611 |
| Cfr10I | RCCGGY | 1 cut(s) | 698 |
| CseI | GACGC | 1 cut(s) | 858 |
| CviAII | CATG | 3 cut(s) | 94, 133, 836 |
| DdeI | CTNAG | 2 cut(s) | 215, 501 |
| DpnI | GATC | 5 cut(s) | 207, 546, 618, 918, 945 |
| DpnII | GATC | 5 cut(s) | 205, 544, 616, 916, 943 |
| EaeI | YGGCCR | 1 cut(s) | 433 |
| Eco57I | CTGAAG | 2 cut(s) | 22, 632 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 62 |
| FaeI | CATG | 3 cut(s) | 97, 136, 839 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 56, 88 |
| FaqI | GGGAC | 1 cut(s) | 657 |
| FatI | CATG | 3 cut(s) | 93, 132, 835 |
| FblI | GTMKAC | 1 cut(s) | 51 |
| FokI | GGATG | 1 cut(s) | 170 |
| FspBI | CTAG | 1 cut(s) | 470 |
| FspI | TGCGCA | 1 cut(s) | 610 |
| GlaI | GCGC | 1 cut(s) | 610 |
| HaeIII | GGCC | 2 cut(s) | 435, 702 |
| HapII | CCGG | 2 cut(s) | 699, 787 |
| HgaI | GACGC | 1 cut(s) | 858 |
| HhaI | GCGC | 1 cut(s) | 611 |
| Hin1II | CATG | 3 cut(s) | 97, 136, 839 |
| Hin6I | GCGC | 1 cut(s) | 609 |
| HinP1I | GCGC | 1 cut(s) | 609 |
| HincII | GTYRAC | 1 cut(s) | 873 |
| HindII | GTYRAC | 1 cut(s) | 873 |
| HindIII | AAGCTT | 1 cut(s) | 426 |
| HinfI | GANTC | 1 cut(s) | 109 |
| HpaII | CCGG | 2 cut(s) | 699, 787 |
| HphI | GGTGA | 3 cut(s) | 16, 335, 747 |
| Hpy166II | GTNNAC | 6 cut(s) | 31, 52, 562, 686, 755, 873 |
| Hpy188I | TCNGA | 3 cut(s) | 339, 418, 804 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 311, 548, 661 |
| Hpy8I | GTNNAC | 6 cut(s) | 31, 52, 562, 686, 755, 873 |
| HpyAV | CCTTC | 3 cut(s) | 46, 320, 572 |
| HpyCH4III | ACNGT | 3 cut(s) | 346, 629, 936 |
| HpyCH4V | TGCA | 8 cut(s) | 31, 378, 401, 424, 588, 768, 863, 964 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 875 |
| HpyF3I | CTNAG | 2 cut(s) | 215, 501 |
| Hsp92II | CATG | 3 cut(s) | 97, 136, 839 |
| HspAI | GCGC | 1 cut(s) | 609 |
| KroI | GCCGGC | 1 cut(s) | 698 |
| KroNI | GCCGGC | 1 cut(s) | 700 |
| Kzo9I | GATC | 5 cut(s) | 205, 544, 616, 916, 943 |
| LweI | GCATC | 4 cut(s) | 291, 388, 411, 856 |
| MaeI | CTAG | 1 cut(s) | 470 |
| MaeIII | GTNAC | 3 cut(s) | 136, 245, 346 |
| MalI | GATC | 5 cut(s) | 207, 546, 618, 918, 945 |
| MbiI | CCGCTC | 1 cut(s) | 852 |
| MboI | GATC | 5 cut(s) | 205, 544, 616, 916, 943 |
| MboII | GAAGA | 1 cut(s) | 953 |
| MfeI | CAATTG | 1 cut(s) | 507 |
| MflI | RGATCY | 3 cut(s) | 544, 616, 916 |
| MhlI | GDGCHC | 1 cut(s) | 33 |
| MlsI | TGGCCA | 1 cut(s) | 435 |
| MluCI | AATT | 9 cut(s) | 145, 507, 512, 539, 721, 780, 881, 892, 958 |
| MluNI | TGGCCA | 1 cut(s) | 435 |
| MlyI | GAGTC | 1 cut(s) | 103 |
| MnlI | CCTC | 3 cut(s) | 61, 167, 286 |
| Mox20I | TGGCCA | 1 cut(s) | 435 |
| MroNI | GCCGGC | 1 cut(s) | 698 |
| MscI | TGGCCA | 1 cut(s) | 435 |
| MseI | TTAA | 4 cut(s) | 624, 654, 891, 957 |
| Msp20I | TGGCCA | 1 cut(s) | 435 |
| MspI | CCGG | 2 cut(s) | 699, 787 |
| MspR9I | CCNGG | 1 cut(s) | 788 |
| MunI | CAATTG | 1 cut(s) | 507 |
| Mva1269I | GAATGC | 1 cut(s) | 611 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 875 |
| NaeI | GCCGGC | 1 cut(s) | 700 |
| NciI | CCSGG | 1 cut(s) | 788 |
| NdeII | GATC | 5 cut(s) | 205, 544, 616, 916, 943 |
| NgoMIV | GCCGGC | 1 cut(s) | 698 |
| NlaIII | CATG | 3 cut(s) | 97, 136, 839 |
| NlaIV | GGNNCC | 2 cut(s) | 336, 546 |
| NsbI | TGCGCA | 1 cut(s) | 610 |
| PctI | GAATGC | 1 cut(s) | 611 |
| PdiI | GCCGGC | 1 cut(s) | 700 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 841 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| PspN4I | GGNNCC | 2 cut(s) | 336, 546 |
| PstI | CTGCAG | 1 cut(s) | 865 |
| PsuI | RGATCY | 3 cut(s) | 544, 616, 916 |
| SaqAI | TTAA | 4 cut(s) | 624, 654, 891, 957 |
| Sau3AI | GATC | 5 cut(s) | 205, 544, 616, 916, 943 |
| SchI | GAGTC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 1 cut(s) | 788 |
| SduI | GDGCHC | 1 cut(s) | 33 |
| SetI | ASST | 8 cut(s) | 16, 38, 411, 430, 583, 595, 654, 773 |
| SfaNI | GCATC | 4 cut(s) | 291, 388, 411, 856 |
| SfcI | CTRYAG | 1 cut(s) | 861 |
| Sse9I | AATT | 9 cut(s) | 145, 507, 512, 539, 721, 780, 881, 892, 958 |
| SsiI | CCGC | 3 cut(s) | 716, 852, 878 |
| SspI | AATATT | 1 cut(s) | 568 |
| SspMI | CTAG | 1 cut(s) | 470 |
| StyD4I | CCNGG | 1 cut(s) | 786 |
| TaaI | ACNGT | 3 cut(s) | 346, 629, 936 |
| TasI | AATT | 9 cut(s) | 145, 507, 512, 539, 721, 780, 881, 892, 958 |
| Tru1I | TTAA | 4 cut(s) | 624, 654, 891, 957 |
| Tru9I | TTAA | 4 cut(s) | 624, 654, 891, 957 |
| TscAI | CASTG | 4 cut(s) | 46, 303, 366, 939 |
| TspDTI | ATGAA | 6 cut(s) | 230, 542, 726, 752, 852, 966 |
| TspRI | CASTG | 4 cut(s) | 46, 303, 366, 939 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 841 |
| VneI | GTGCAC | 1 cut(s) | 29 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 62 |
| XapI | RAATTY | 1 cut(s) | 721 |
| XmiI | GTMKAC | 1 cut(s) | 51 |
| XspI | CTAG | 1 cut(s) | 470 |