Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 15 - 46 | 3.8e-08 | PPR repeat |
| PPR_2 | PF13041 | 18 - 70 | 1.6e-13 | PPR repeat family |
| PPR_1 | PF12854 | 54 - 85 | 6.3e-10 | PPR repeat |
| PPR_3 | PF13812 | 55 - 101 | 1.5e-12 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 56 - 105 | 6.3e-17 | PPR repeat family |
| PPR | PF01535 | 59 - 89 | 4.5e-06 | PPR repeat |
| PPR_1 | PF12854 | 87 - 119 | 1.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 91 - 140 | 1.1e-16 | PPR repeat family |
| PPR | PF01535 | 94 - 124 | 9.6e-07 | PPR repeat |
| PPR_3 | PF13812 | 115 - 173 | 5.2e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 122 - 155 | 7.2e-13 | PPR repeat |
| PPR_2 | PF13041 | 126 - 175 | 7.1e-19 | PPR repeat family |
| PPR | PF01535 | 129 - 159 | 5.1e-08 | PPR repeat |
| MRP-S27 | PF10037 | 130 - 189 | 6.6e-06 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 190 - 219 | 2.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 206 - 240 | 3e-08 | PPR repeat family |
| PPR_1 | PF12854 | 223 - 254 | 8.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 234 - 275 | 7.2e-07 | PPR repeat family |
| PPR_2 | PF13041 | 262 - 300 | 1.5e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 60 |
| Acc36I | ACCTGC | 1 cut(s) | 143 |
| AciI | CCGC | 1 cut(s) | 843 |
| AcoI | YGGCCR | 1 cut(s) | 667 |
| AcsI | RAATTY | 2 cut(s) | 29, 411 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AluBI | AGCT | 4 cut(s) | 12, 440, 673, 827 |
| AluI | AGCT | 4 cut(s) | 12, 440, 673, 827 |
| Alw26I | GTCTC | 1 cut(s) | 616 |
| Ama87I | CYCGRG | 1 cut(s) | 616 |
| AoxI | GGCC | 5 cut(s) | 43, 198, 424, 667, 709 |
| ApeKI | GCWGC | 3 cut(s) | 116, 139, 227 |
| ApoI | RAATTY | 2 cut(s) | 29, 411 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 344 |
| AspLEI | GCGC | 1 cut(s) | 152 |
| AspS9I | GGNCC | 1 cut(s) | 43 |
| AsuHPI | GGTGA | 6 cut(s) | 55, 61, 121, 175, 475, 484 |
| AvaI | CYCGRG | 1 cut(s) | 616 |
| AxyI | CCTNAGG | 1 cut(s) | 111 |
| BalI | TGGCCA | 1 cut(s) | 669 |
| BbsI | GAAGAC | 1 cut(s) | 52 |
| BbvI | GCAGC | 3 cut(s) | 103, 126, 214 |
| BccI | CCATC | 4 cut(s) | 205, 244, 302, 701 |
| BceAI | ACGGC | 2 cut(s) | 100, 753 |
| BciVI | GTATCC | 1 cut(s) | 310 |
| BcoDI | GTCTC | 1 cut(s) | 616 |
| BfaI | CTAG | 1 cut(s) | 659 |
| BfmI | CTRYAG | 1 cut(s) | 140 |
| BfuAI | ACCTGC | 1 cut(s) | 143 |
| BfuI | GTATCC | 1 cut(s) | 310 |
| BglII | AGATCT | 1 cut(s) | 850 |
| BisI | GCNGC | 3 cut(s) | 117, 140, 228 |
| BlsI | GCNGC | 3 cut(s) | 118, 141, 229 |
| BmeT110I | CYCGRG | 1 cut(s) | 616 |
| BmgT120I | GGNCC | 1 cut(s) | 43 |
| BmsI | GCATC | 2 cut(s) | 254, 645 |
| BpiI | GAAGAC | 1 cut(s) | 52 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| Bse118I | RCCGGY | 1 cut(s) | 426 |
| Bse21I | CCTNAGG | 1 cut(s) | 111 |
| BseGI | GGATG | 1 cut(s) | 269 |
| BseMII | CTCAG | 3 cut(s) | 102, 363, 665 |
| BseXI | GCAGC | 3 cut(s) | 103, 126, 214 |
| BsgI | GTGCAG | 1 cut(s) | 102 |
| BshFI | GGCC | 5 cut(s) | 45, 200, 426, 669, 711 |
| BsiHKCI | CYCGRG | 1 cut(s) | 616 |
| BsiSI | CCGG | 1 cut(s) | 427 |
| BsmAI | GTCTC | 1 cut(s) | 616 |
| BsnI | GGCC | 5 cut(s) | 45, 200, 426, 669, 711 |
| BsoBI | CYCGRG | 1 cut(s) | 616 |
| Bsp143I | GATC | 1 cut(s) | 850 |
| BspACI | CCGC | 1 cut(s) | 843 |
| BspANI | GGCC | 5 cut(s) | 45, 200, 426, 669, 711 |
| BspCNI | CTCAG | 3 cut(s) | 103, 362, 664 |
| BspMAI | CTGCAG | 1 cut(s) | 144 |
| BspMI | ACCTGC | 1 cut(s) | 143 |
| BsrFI | RCCGGY | 1 cut(s) | 426 |
| BssAI | RCCGGY | 1 cut(s) | 426 |
| BssMI | GATC | 1 cut(s) | 850 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 3 cut(s) | 305, 611, 915 |
| Bst6I | CTCTTC | 2 cut(s) | 350, 860 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 4 cut(s) | 144, 148, 269, 671 |
| BstDEI | CTNAG | 4 cut(s) | 111, 349, 522, 651 |
| BstF5I | GGATG | 1 cut(s) | 269 |
| BstHHI | GCGC | 1 cut(s) | 152 |
| BstKTI | GATC | 1 cut(s) | 853 |
| BstMAI | GTCTC | 1 cut(s) | 616 |
| BstMBI | GATC | 1 cut(s) | 850 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 423 |
| BstSFI | CTRYAG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 3 cut(s) | 103, 126, 214 |
| BstV2I | GAAGAC | 1 cut(s) | 52 |
| BstX2I | RGATCY | 1 cut(s) | 850 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 544 |
| BstYI | RGATCY | 1 cut(s) | 850 |
| Bsu36I | CCTNAGG | 1 cut(s) | 111 |
| BsuI | GTATCC | 1 cut(s) | 310 |
| BsuRI | GGCC | 5 cut(s) | 45, 200, 426, 669, 711 |
| BtsCI | GGATG | 1 cut(s) | 269 |
| BtsI | GCAGTG | 1 cut(s) | 222 |
| BtsIMutI | CAGTG | 2 cut(s) | 222, 911 |
| BveI | ACCTGC | 1 cut(s) | 143 |
| Cac8I | GCNNGC | 4 cut(s) | 144, 148, 269, 671 |
| CfoI | GCGC | 1 cut(s) | 152 |
| Cfr10I | RCCGGY | 1 cut(s) | 426 |
| Cfr13I | GGNCC | 1 cut(s) | 43 |
| CviAII | CATG | 1 cut(s) | 553 |
| DdeI | CTNAG | 4 cut(s) | 111, 349, 522, 651 |
| DpnI | GATC | 1 cut(s) | 852 |
| DpnII | GATC | 1 cut(s) | 850 |
| EaeI | YGGCCR | 1 cut(s) | 667 |
| Eam1104I | CTCTTC | 2 cut(s) | 350, 860 |
| EarI | CTCTTC | 2 cut(s) | 350, 860 |
| Eco147I | AGGCCT | 1 cut(s) | 200 |
| Eco81I | CCTNAGG | 1 cut(s) | 111 |
| Eco88I | CYCGRG | 1 cut(s) | 616 |
| FaeI | CATG | 1 cut(s) | 556 |
| FaiI | YATR | 7 cut(s) | 288, 422, 554, 570, 605, 693, 909 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 765, 797 |
| FatI | CATG | 1 cut(s) | 552 |
| Fnu4HI | GCNGC | 3 cut(s) | 117, 140, 228 |
| FokI | GGATG | 1 cut(s) | 276 |
| Fsp4HI | GCNGC | 3 cut(s) | 117, 140, 228 |
| FspBI | CTAG | 1 cut(s) | 659 |
| GlaI | GCGC | 1 cut(s) | 151 |
| GluI | GCNGC | 3 cut(s) | 117, 140, 228 |
| HaeIII | GGCC | 5 cut(s) | 45, 200, 426, 669, 711 |
| HapII | CCGG | 1 cut(s) | 427 |
| HhaI | GCGC | 1 cut(s) | 152 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin1II | CATG | 1 cut(s) | 556 |
| Hin6I | GCGC | 1 cut(s) | 150 |
| HinP1I | GCGC | 1 cut(s) | 150 |
| HincII | GTYRAC | 1 cut(s) | 550 |
| HindII | GTYRAC | 1 cut(s) | 550 |
| HinfI | GANTC | 3 cut(s) | 403, 559, 839 |
| HpaII | CCGG | 1 cut(s) | 427 |
| HphI | GGTGA | 6 cut(s) | 55, 61, 121, 175, 475, 484 |
| Hpy166II | GTNNAC | 3 cut(s) | 177, 550, 796 |
| Hpy188I | TCNGA | 4 cut(s) | 352, 654, 896, 904 |
| Hpy188III | TCNNGA | 2 cut(s) | 482, 677 |
| Hpy8I | GTNNAC | 3 cut(s) | 177, 550, 796 |
| Hpy99I | CGWCG | 1 cut(s) | 386 |
| HpyAV | CCTTC | 4 cut(s) | 56, 76, 505, 806 |
| HpyCH4III | ACNGT | 3 cut(s) | 305, 611, 915 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 381 |
| HpyCH4V | TGCA | 5 cut(s) | 119, 142, 207, 267, 417 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 423 |
| HpyF3I | CTNAG | 4 cut(s) | 111, 349, 522, 651 |
| HpySE526I | ACGT | 2 cut(s) | 57, 381 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| Hsp92II | CATG | 1 cut(s) | 556 |
| HspAI | GCGC | 1 cut(s) | 150 |
| Kzo9I | GATC | 1 cut(s) | 850 |
| LmnI | GCTCC | 1 cut(s) | 379 |
| Lsp1109I | GCAGC | 3 cut(s) | 103, 126, 214 |
| LweI | GCATC | 2 cut(s) | 254, 645 |
| MaeI | CTAG | 1 cut(s) | 659 |
| MaeII | ACGT | 2 cut(s) | 57, 381 |
| MaeIII | GTNAC | 4 cut(s) | 385, 490, 611, 716 |
| MalI | GATC | 1 cut(s) | 852 |
| MboI | GATC | 1 cut(s) | 850 |
| MboII | GAAGA | 7 cut(s) | 25, 52, 259, 266, 337, 344, 847 |
| MfeI | CAATTG | 1 cut(s) | 834 |
| MflI | RGATCY | 1 cut(s) | 850 |
| MlsI | TGGCCA | 1 cut(s) | 669 |
| MluCI | AATT | 7 cut(s) | 29, 38, 236, 324, 411, 746, 834 |
| MluNI | TGGCCA | 1 cut(s) | 669 |
| MnlI | CCTC | 5 cut(s) | 106, 254, 353, 359, 438 |
| Mox20I | TGGCCA | 1 cut(s) | 669 |
| MroXI | GAANNNNTTC | 1 cut(s) | 344 |
| MscI | TGGCCA | 1 cut(s) | 669 |
| MseI | TTAA | 3 cut(s) | 194, 753, 783 |
| MslI | CAYNNNNRTG | 1 cut(s) | 134 |
| Msp20I | TGGCCA | 1 cut(s) | 669 |
| MspI | CCGG | 1 cut(s) | 427 |
| MunI | CAATTG | 1 cut(s) | 834 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 423 |
| NdeII | GATC | 1 cut(s) | 850 |
| NlaIII | CATG | 1 cut(s) | 556 |
| NmuCI | GTSAC | 1 cut(s) | 490 |
| PceI | AGGCCT | 1 cut(s) | 200 |
| PdmI | GAANNNNTTC | 1 cut(s) | 344 |
| PfeI | GAWTC | 3 cut(s) | 403, 559, 839 |
| PkrI | GCNGC | 3 cut(s) | 118, 141, 229 |
| PspPI | GGNCC | 1 cut(s) | 43 |
| PstI | CTGCAG | 1 cut(s) | 144 |
| PsuI | RGATCY | 1 cut(s) | 850 |
| RseI | CAYNNNNRTG | 1 cut(s) | 134 |
| SaqAI | TTAA | 3 cut(s) | 194, 753, 783 |
| SatI | GCNGC | 3 cut(s) | 117, 140, 228 |
| Sau3AI | GATC | 1 cut(s) | 850 |
| Sau96I | GGNCC | 1 cut(s) | 43 |
| SfaNI | GCATC | 2 cut(s) | 254, 645 |
| SfcI | CTRYAG | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 134 |
| Sse9I | AATT | 7 cut(s) | 29, 38, 236, 324, 411, 746, 834 |
| SseBI | AGGCCT | 1 cut(s) | 200 |
| SsiI | CCGC | 1 cut(s) | 843 |
| SspI | AATATT | 1 cut(s) | 787 |
| SspMI | CTAG | 1 cut(s) | 659 |
| StuI | AGGCCT | 1 cut(s) | 200 |
| TaaI | ACNGT | 3 cut(s) | 305, 611, 915 |
| TaiI | ACGT | 2 cut(s) | 60, 384 |
| TaqI | TCGA | 2 cut(s) | 300, 364 |
| TasI | AATT | 7 cut(s) | 29, 38, 236, 324, 411, 746, 834 |
| TfiI | GAWTC | 3 cut(s) | 403, 559, 839 |
| Tru1I | TTAA | 3 cut(s) | 194, 753, 783 |
| Tru9I | TTAA | 3 cut(s) | 194, 753, 783 |
| TscAI | CASTG | 2 cut(s) | 229, 918 |
| TseFI | GTSAC | 1 cut(s) | 490 |
| TseI | GCWGC | 3 cut(s) | 116, 139, 227 |
| Tsp45I | GTSAC | 1 cut(s) | 490 |
| TspDTI | ATGAA | 3 cut(s) | 345, 353, 471 |
| TspRI | CASTG | 2 cut(s) | 229, 918 |
| XapI | RAATTY | 2 cut(s) | 29, 411 |
| XmnI | GAANNNNTTC | 1 cut(s) | 344 |
| XspI | CTAG | 1 cut(s) | 659 |
| ZraI | GACGTC | 1 cut(s) | 58 |