Rorug05G0420500

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
58475401 .. 58482268
6868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0420500.1

Sequence Viewer

Length: 2223 bp
ATGGCTACCGGAGCTGTACCGGCTTCCTTTACGGGCCTAAAAGGCAGGGAGACGAGGTTGGGGTTCACTAAAAGCATGGATTTTGTGAGGCTCTCTGATTTGAAGCGGTTTAAGTCTGGCAGAACTAGGATTTCAGTGATAAGGAACTCGAATCCTGGATCGGATATCGCTGAACTCAAGCCTGCATCTGAAGGCAGCCCTTTGTTAGTTCCTCGACAAAAGTATTGTGAATCCATACACAAAACTGTCAGAAGAAAGACAAGGACAGTGATGGTTGGAAATGTGGCTATTGGCAGTGAGCATCCCATAAGGATTCAAACGATGACAACAAGTGACACAAAGGATGTATCTGCTACAGTTGAAGAGGTGATGAGAATAGCAGACAAGGGTGCAGATATTGTTCGGATAACAGTTCAAGGGAAGAAGGAAGCAGATGCTTGTTATGAGATTAAAAATTCCCTGGTGCAGAAAAATTACAATATACCTCTGGTGGCAGATATTCATTTTGCTCCTTCTGTTGCGTTGCGAGTTGCTGAATGTTTTGACAAAATTCGTGTCAACCCTGGAAATTTTGCTGATAGACGCGCACAATTTGAGAAGTTAGAGTACACAGAAGACGACTACGAGAAAGAACTTGAGCACATTGAGCAGGTTTTTACTCCATTGGTTGAAAAATGTAAGAAGTATGGAAGAGCAATGCGTATTGGCACAAACCATGGGAGCCTTTCAGATCGTATAATGAGCTACTATGGAGATTCACCTAGAGGAATGGTAGAATCTGCATTTGAGTTTGCGAGGATCTGCAGGAAGTTGGACTATCATAACTTTCTTTTCTCAATGAAAGCAAGCAATCCGGTTATTATGGTCCAAGCTTATCGTCTTCTTGTGGCTGAAATGTATGTTCAAGGCTGGGATTATCCATTACACTTGGGTGTCACTGAAGCTGGAGAAGGTGAGGATGGACGGATGAAATCTGCAATTGGTATTGGGACCCTTCTTCAGGATGGTTTGGGTGATACAATTAGGGTTTCACTTACTGAAGCACCTGAGGAGGAGATCGATCCTTGCAAAAGATTGGCCAACCTTGGTAAAAGAGCAGCTGATCTCCAGCAAGGAGTGGATCCATTTGAAGAGAAACACCGACATTACTTTGATTTTCAGCGGCGATCTGGTCAACTGCCAGTGCAAAAGGAGGGTGATGAGGTGGATTATAGAGGGGTCCTGCATCGTGATGGCTCAGTTCTGATGTCAGTCTCCCTTGATCAGTTGAAGACACCAGAGCTTCTGTACAAGTCACTTGCAGCAAAACTTGTCGTGGGCATGCCATTTAAGGATCTGGCAACAGTTGACTCGATCTTATTGAGACAACTACCACCTGTTGACGACGATGATTCTCGTCTGGCTCTCAAAAGGTTGATAGATGTAAGTATGGGTGTTATAACGCCATTGTCAGAGCAGCTTACGAAACCATTACCAAATGCCATGGTTCTGGTAAATTCAAAGGAATTATCAACTGGTGCATACAAGCTTTTGCCAGAAGGTACACGCTTGGTTGTCTCGGTCCGTGGTGATGAACCCTATGAAGTTCTGGATCTTTTCAAAGGCCTTGATGTTACAATGCTTCTCCATGACCTGCCATTCAGTGAAGAGAAAATAAGCCGAGTGCATGCAGCAAGGAGGCTTTTTGAGTATCTGGGAGACAATGATCTAAACTTTCCTGTAATACACCATATTCAGTTTCCAAGTGGAATTCATAGGGATGACTTGGTTATTGGTGCCGGTACCAATGCGGGAGCCCTTTTAGTAGATGGGCTTGGAGATGGTCTCCTATTAGAAGCCCCTGACAAGGATTTCGAGTTCATTAGAAACACATCTTTCAATTTACTACAAGGTTGTAGAATGCGGAACACAAAGACGGAGTATGTCTCATGCCCATCATGTGGAAGAACTTTGTTTGATCTGCAAGAAATAAGCGCACAAATACGAGAGAAGACATCACACTTGCCTGGTGTTTCAATTGCAATCATGGGTTGCATTGTAAATGGACCTGGGGAGATGGCAGATGCAGACTTCGGGTATGTTGGTGGTGCTCCTGGAAAGATTGATCTTTATGTTGGGAAGACTGTGGTGAAGCGTGGAATAGAGATGGAGCATGCAACTGATGCCTTGATCCAGCTAATAAAAGATCATGATCGCTGGGTTGACCCTCCAGCAGAAGAGTGA

Protein Analysis

740

Amino Acids

82.35

Weight (kDa)

5.92

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GcpE PF04551 87 - 356 5.9e-89 GcpE TIM-barrel domain
GcpE_C PF26540 640 - 728 3.3e-24 GcpE protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1439
Acc36I ACCTGC 2 cut(s) 640, 1641
Acc65I GGTACC 1 cut(s) 1781
AccB1I GGYRCC 2 cut(s) 1775, 1781
AccB7I CCANNNNNTGG 1 cut(s) 1940
AccII CGCG 1 cut(s) 585
AciI CCGC 4 cut(s) 106, 1162, 1790, 1903
AclWI GGATC 8 cut(s) 166, 806, 1055, 1115, 1128, 1341, 1599, 2164
AcoI YGGCCR 1 cut(s) 1077
AcsI RAATTY 5 cut(s) 454, 549, 568, 1495, 1749
AcuI CTGAAG 4 cut(s) 210, 960, 983, 1059
AfaI GTAC 5 cut(s) 18, 608, 1289, 1543, 1783
AfiI CCNNNNNNNGG 3 cut(s) 1000, 1846, 1940
AjnI CCWGG 6 cut(s) 154, 459, 562, 2005, 2047, 2092
AleI CACNNNNGTG 1 cut(s) 930
AloI GAACNNNNNNTCC 2 cut(s) 1841, 1873
AluBI AGCT 9 cut(s) 14, 744, 872, 944, 1100, 1282, 1459, 1528, 2176
AluI AGCT 9 cut(s) 14, 744, 872, 944, 1100, 1282, 1459, 1528, 2176
Alw21I GWGCWC 2 cut(s) 642, 2092
Alw26I GTCTC 7 cut(s) 44, 1258, 1357, 1561, 1692, 1829, 1930
AlwI GGATC 8 cut(s) 166, 806, 1055, 1115, 1128, 1341, 1599, 2164
AoxI GGCC 3 cut(s) 34, 1077, 1603
ApeKI GCWGC 5 cut(s) 195, 1097, 1301, 1456, 1670
ApoI RAATTY 5 cut(s) 454, 549, 568, 1495, 1749
ArsI GACNNNNNNTTYG 4 cut(s) 540, 572, 1835, 1867
Asp718I GGTACC 1 cut(s) 1781
AspLEI GCGC 2 cut(s) 587, 1976
AspS9I GGNCC 6 cut(s) 34, 865, 990, 1219, 1561, 2045
AsuHPI GGTGA 7 cut(s) 379, 750, 965, 1025, 1208, 1580, 2140
AvaII GGWCC 5 cut(s) 865, 990, 1219, 1561, 2045
AxyI CCTNAGG 1 cut(s) 1047
BalI TGGCCA 1 cut(s) 1079
BamHI GGATCC 1 cut(s) 1120
BanI GGYRCC 2 cut(s) 1775, 1781
BanII GRGCYC 1 cut(s) 1798
BarI GAAGNNNNNNTAC 2 cut(s) 590, 622
BbsI GAAGAC 5 cut(s) 621, 872, 1277, 1997, 2126
Bbv12I GWGCWC 2 cut(s) 642, 2092
BbvI GCAGC 5 cut(s) 207, 1109, 1313, 1468, 1682
BccI CCATC 9 cut(s) 265, 953, 998, 1226, 1802, 1814, 1942, 2050, 2140
BciT130I CCWGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
BclI TGATCA 1 cut(s) 1261
BcoDI GTCTC 7 cut(s) 44, 1258, 1357, 1561, 1692, 1829, 1930
BfaI CTAG 2 cut(s) 126, 762
BfmI CTRYAG 2 cut(s) 354, 802
BfuAI ACCTGC 2 cut(s) 640, 1641
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 6 cut(s) 196, 1098, 1163, 1302, 1457, 1671
BlsI GCNGC 6 cut(s) 197, 1099, 1164, 1303, 1458, 1672
Bme1390I CCNGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
Bme18I GGWCC 5 cut(s) 865, 990, 1219, 1561, 2045
BmgT120I GGNCC 6 cut(s) 34, 865, 990, 1219, 1561, 2045
BmiI GGNNCC 8 cut(s) 722, 991, 992, 1122, 1220, 1777, 1783, 1795
BmrFI CCNGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
BmsI GCATC 6 cut(s) 194, 310, 424, 1234, 2053, 2152
BpiI GAAGAC 5 cut(s) 621, 872, 1277, 1997, 2126
BplI GAGNNNNNCTC 4 cut(s) 1809, 1841, 1910, 1942
BpmI CTGGAG 3 cut(s) 966, 1091, 2193
BpuEI CTTGAG 2 cut(s) 161, 656
Bsa29I ATCGAT 1 cut(s) 1059
BsaBI GATNNNNATC 1 cut(s) 2190
BsaI GGTCTC 1 cut(s) 1829
BsaJI CCNNGG 7 cut(s) 459, 562, 715, 1084, 1482, 1564, 2048
BsaWI WCCGGW 2 cut(s) 8, 853
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 3 cut(s) 1000, 1846, 1940
Bse118I RCCGGY 2 cut(s) 19, 1778
Bse1I ACTGG 2 cut(s) 1181, 1519
Bse21I CCTNAGG 1 cut(s) 1047
Bse3DI GCAATG 1 cut(s) 702
Bse8I GATNNNNATC 1 cut(s) 2190
BseBI CCWGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
BseCI ATCGAT 1 cut(s) 1059
BseDI CCNNGG 7 cut(s) 459, 562, 715, 1084, 1482, 1564, 2048
BseGI GGATG 6 cut(s) 301, 349, 964, 972, 1009, 1765
BseJI GATNNNNATC 1 cut(s) 2190
BseLI CCNNNNNNNGG 3 cut(s) 1000, 1846, 1940
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 2 cut(s) 1038, 1251
BseNI ACTGG 2 cut(s) 1181, 1519
BseRI GAGGAG 2 cut(s) 1064, 1067
BseXI GCAGC 5 cut(s) 207, 1109, 1313, 1468, 1682
BseYI CCCAGC 2 cut(s) 909, 2196
BsgI GTGCAG 2 cut(s) 411, 485
Bsh1236I CGCG 1 cut(s) 585
BshFI GGCC 3 cut(s) 36, 1079, 1605
BshNI GGYRCC 2 cut(s) 1775, 1781
BshVI ATCGAT 1 cut(s) 1059
BsiHKAI GWGCWC 2 cut(s) 642, 2092
BsiSI CCGG 4 cut(s) 9, 20, 854, 1779
BslFI GGGAC 1 cut(s) 1003
BslI CCNNNNNNNGG 3 cut(s) 1000, 1846, 1940
BsmAI GTCTC 7 cut(s) 44, 1258, 1357, 1561, 1692, 1829, 1930
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 1003
BsmI GAATGC 1 cut(s) 1905
BsnI GGCC 3 cut(s) 36, 1079, 1605
Bso31I GGTCTC 1 cut(s) 1829
Bsp1286I GDGCHC 3 cut(s) 642, 1798, 2092
Bsp1407I TGTACA 1 cut(s) 1287
Bsp19I CCATGG 2 cut(s) 715, 1482
BspACI CCGC 4 cut(s) 106, 1162, 1790, 1903
BspANI GGCC 3 cut(s) 36, 1079, 1605
BspCNI CTCAG 2 cut(s) 1039, 1250
BspDI ATCGAT 1 cut(s) 1059
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 2188
BspLI GGNNCC 8 cut(s) 722, 991, 992, 1122, 1220, 1777, 1783, 1795
BspMAI CTGCAG 1 cut(s) 806
BspMI ACCTGC 2 cut(s) 640, 1641
BspPI GGATC 8 cut(s) 166, 806, 1055, 1115, 1128, 1341, 1599, 2164
BspQI GCTCTTC 1 cut(s) 685
BspT107I GGYRCC 2 cut(s) 1775, 1781
BspTNI GGTCTC 1 cut(s) 1829
BsrDI GCAATG 1 cut(s) 702
BsrFI RCCGGY 2 cut(s) 19, 1778
BsrGI TGTACA 1 cut(s) 1287
BsrI ACTGG 2 cut(s) 1181, 1519
BssAI RCCGGY 2 cut(s) 19, 1778
BssECI CCNNGG 7 cut(s) 459, 562, 715, 1084, 1482, 1564, 2048
BssT1I CCWWGG 3 cut(s) 715, 1084, 1482
Bst2UI CCWGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
Bst4CI ACNGT 6 cut(s) 247, 268, 358, 412, 1345, 2125
Bst6I CTCTTC 5 cut(s) 357, 685, 1125, 1641, 2211
BstAPI GCANNNNNTGC 1 cut(s) 2162
BstAUI TGTACA 1 cut(s) 1287
BstC8I GCNNGC 5 cut(s) 183, 847, 1322, 1668, 2154
BstDEI CTNAG 2 cut(s) 1047, 1237
BstDSI CCRYGG 3 cut(s) 715, 1482, 1564
BstENI CCTNNNNNAGG 1 cut(s) 998
BstF5I GGATG 6 cut(s) 301, 349, 964, 972, 1009, 1765
BstFNI CGCG 1 cut(s) 585
BstHHI GCGC 2 cut(s) 587, 1976
BstMAI GTCTC 7 cut(s) 44, 1258, 1357, 1561, 1692, 1829, 1930
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 42, 646, 2162
BstNI CCWGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
BstNSI RCATGY 3 cut(s) 1324, 1670, 2156
BstSCI CCNGG 6 cut(s) 154, 459, 562, 2005, 2047, 2092
BstSFI CTRYAG 2 cut(s) 354, 802
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 5 cut(s) 207, 1109, 1313, 1468, 1682
BstV2I GAAGAC 5 cut(s) 621, 872, 1277, 1997, 2126
BstX2I RGATCY 4 cut(s) 798, 1120, 1333, 1591
BstXI CCANNNNNNTGG 1 cut(s) 1489
BstYI RGATCY 4 cut(s) 798, 1120, 1333, 1591
Bsu15I ATCGAT 1 cut(s) 1059
Bsu36I CCTNAGG 1 cut(s) 1047
BsuRI GGCC 3 cut(s) 36, 1079, 1605
BsuTUI ATCGAT 1 cut(s) 1059
BtgI CCRYGG 3 cut(s) 715, 1482, 1564
BtsCI GGATG 6 cut(s) 301, 349, 964, 972, 1009, 1765
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 6 cut(s) 141, 273, 301, 936, 1188, 1648
BveI ACCTGC 2 cut(s) 640, 1641
Cac8I GCNNGC 5 cut(s) 183, 847, 1322, 1668, 2154
CciI TCATGA 1 cut(s) 2188
CfoI GCGC 2 cut(s) 587, 1976
Cfr10I RCCGGY 2 cut(s) 19, 1778
Cfr13I GGNCC 6 cut(s) 34, 865, 990, 1219, 1561, 2045
ClaI ATCGAT 1 cut(s) 1059
CpoI CGGWCCG 1 cut(s) 1561
CseI GACGC 1 cut(s) 591
Csp6I GTAC 5 cut(s) 17, 607, 1288, 1542, 1782
CspI CGGWCCG 1 cut(s) 1561
CviQI GTAC 5 cut(s) 17, 607, 1288, 1542, 1782
DdeI CTNAG 2 cut(s) 1047, 1237
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 5 cut(s) 357, 685, 1125, 1641, 2211
EarI CTCTTC 5 cut(s) 357, 685, 1125, 1641, 2211
Eco130I CCWWGG 3 cut(s) 715, 1084, 1482
Eco147I AGGCCT 1 cut(s) 1605
Eco24I GRGCYC 1 cut(s) 1798
Eco31I GGTCTC 1 cut(s) 1829
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 5 cut(s) 865, 990, 1219, 1561, 2045
Eco57I CTGAAG 4 cut(s) 210, 960, 983, 1059
Eco81I CCTNAGG 1 cut(s) 1047
EcoNI CCTNNNNNAGG 1 cut(s) 998
EcoO109I RGGNCCY 2 cut(s) 990, 1219
EcoRI GAATTC 1 cut(s) 1749
EcoRII CCWGG 6 cut(s) 154, 459, 562, 2005, 2047, 2092
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 3 cut(s) 715, 1084, 1482
EcoT38I GRGCYC 1 cut(s) 1798
ErhI CCWWGG 3 cut(s) 715, 1084, 1482
Esp3I CGTCTC 1 cut(s) 44
FaqI GGGAC 1 cut(s) 1003
FauI CCCGC 1 cut(s) 1783
FbaI TGATCA 1 cut(s) 1261
Fnu4HI GCNGC 6 cut(s) 196, 1098, 1163, 1302, 1457, 1671
FokI GGATG 6 cut(s) 288, 356, 971, 979, 1016, 1772
FriOI GRGCYC 1 cut(s) 1798
Fsp4HI GCNGC 6 cut(s) 196, 1098, 1163, 1302, 1457, 1671
FspBI CTAG 2 cut(s) 126, 762
GlaI GCGC 2 cut(s) 586, 1975
GluI GCNGC 6 cut(s) 196, 1098, 1163, 1302, 1457, 1671
GsaI CCCAGC 2 cut(s) 913, 2200
GsuI CTGGAG 3 cut(s) 966, 1091, 2193
HaeIII GGCC 3 cut(s) 36, 1079, 1605
HapII CCGG 4 cut(s) 9, 20, 854, 1779
HgaI GACGC 1 cut(s) 591
HhaI GCGC 2 cut(s) 587, 1976
Hin6I GCGC 2 cut(s) 585, 1974
HinP1I GCGC 2 cut(s) 585, 1974
HincII GTYRAC 5 cut(s) 559, 1175, 1348, 1381, 2203
HindII GTYRAC 5 cut(s) 559, 1175, 1348, 1381, 2203
HindIII AAGCTT 2 cut(s) 870, 1526
HinfI GANTC 7 cut(s) 151, 230, 313, 755, 776, 1349, 1391
HpaII CCGG 4 cut(s) 9, 20, 854, 1779
HphI GGTGA 7 cut(s) 379, 750, 965, 1025, 1208, 1580, 2140
Hpy166II GTNNAC 8 cut(s) 66, 559, 609, 1175, 1348, 1381, 1544, 2203
Hpy188I TCNGA 8 cut(s) 97, 163, 190, 251, 405, 730, 1245, 1453
Hpy188III TCNNGA 4 cut(s) 1001, 1229, 1589, 2189
Hpy8I GTNNAC 8 cut(s) 66, 559, 609, 1175, 1348, 1381, 1544, 2203
Hpy99I CGWCG 1 cut(s) 1388
HpyAV CCTTC 6 cut(s) 185, 418, 522, 944, 1004, 1532
HpyCH4III ACNGT 6 cut(s) 247, 268, 358, 412, 1345, 2125
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 42, 646, 2162
HpyF3I CTNAG 2 cut(s) 1047, 1237
HspAI GCGC 2 cut(s) 585, 1974
KflI GGGWCCC 1 cut(s) 990
KpnI GGTACC 1 cut(s) 1785
Ksp22I TGATCA 1 cut(s) 1261
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 6 cut(s) 11, 514, 720, 1793, 2095, 2149
Lsp1109I GCAGC 5 cut(s) 207, 1109, 1313, 1468, 1682
LweI GCATC 6 cut(s) 194, 310, 424, 1234, 2053, 2152
MaeI CTAG 2 cut(s) 126, 762
MaeIII GTNAC 4 cut(s) 332, 934, 1293, 1612
MfeI CAATTG 2 cut(s) 978, 2016
MflI RGATCY 4 cut(s) 798, 1120, 1333, 1591
MhlI GDGCHC 3 cut(s) 642, 1798, 2092
MlsI TGGCCA 1 cut(s) 1079
MluNI TGGCCA 1 cut(s) 1079
MlyI GAGTC 1 cut(s) 1343
MmeI TCCRAC 2 cut(s) 256, 792
Mox20I TGGCCA 1 cut(s) 1079
MscI TGGCCA 1 cut(s) 1079
MseI TTAA 3 cut(s) 111, 450, 1329
MslI CAYNNNNRTG 3 cut(s) 930, 1230, 1758
Msp20I TGGCCA 1 cut(s) 1079
MspA1I CMGCKG 2 cut(s) 1100, 1162
MspI CCGG 4 cut(s) 9, 20, 854, 1779
MspR9I CCNGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
MunI CAATTG 2 cut(s) 978, 2016
Mva1269I GAATGC 1 cut(s) 1905
MvaI CCWGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 42, 646, 2162
NcoI CCATGG 2 cut(s) 715, 1482
NlaIV GGNNCC 8 cut(s) 722, 991, 992, 1122, 1220, 1777, 1783, 1795
NmeAIII GCCGAG 1 cut(s) 1685
NmuCI GTSAC 3 cut(s) 332, 934, 1293
NspI RCATGY 3 cut(s) 1324, 1670, 2156
OliI CACNNNNGTG 1 cut(s) 930
PaeI GCATGC 3 cut(s) 1324, 1670, 2156
PagI TCATGA 1 cut(s) 2188
PceI AGGCCT 1 cut(s) 1605
PciSI GCTCTTC 1 cut(s) 685
PctI GAATGC 1 cut(s) 1905
PfeI GAWTC 6 cut(s) 151, 230, 313, 755, 776, 1391
PflMI CCANNNNNTGG 1 cut(s) 1940
PfoI TCCNGGA 2 cut(s) 154, 2092
PkrI GCNGC 6 cut(s) 197, 1099, 1164, 1303, 1458, 1672
PleI GAGTC 1 cut(s) 1343
PpsI GAGTC 1 cut(s) 1343
PpuMI RGGWCCY 2 cut(s) 990, 1219
PsiI TTATAA 1 cut(s) 1439
Psp5II RGGWCCY 2 cut(s) 990, 1219
Psp6I CCWGG 6 cut(s) 154, 459, 562, 2005, 2047, 2092
PspFI CCCAGC 2 cut(s) 909, 2196
PspGI CCWGG 6 cut(s) 154, 459, 562, 2005, 2047, 2092
PspN4I GGNNCC 8 cut(s) 722, 991, 992, 1122, 1220, 1777, 1783, 1795
PspPI GGNCC 6 cut(s) 34, 865, 990, 1219, 1561, 2045
PspPPI RGGWCCY 2 cut(s) 990, 1219
PstI CTGCAG 1 cut(s) 806
PsuI RGATCY 4 cut(s) 798, 1120, 1333, 1591
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 5 cut(s) 18, 608, 1289, 1543, 1783
RsaNI GTAC 5 cut(s) 17, 607, 1288, 1542, 1782
RseI CAYNNNNRTG 3 cut(s) 930, 1230, 1758
Rsr2I CGGWCCG 1 cut(s) 1561
RsrII CGGWCCG 1 cut(s) 1561
SapI GCTCTTC 1 cut(s) 685
SaqAI TTAA 3 cut(s) 111, 450, 1329
SatI GCNGC 6 cut(s) 196, 1098, 1163, 1302, 1457, 1671
Sau96I GGNCC 6 cut(s) 34, 865, 990, 1219, 1561, 2045
SchI GAGTC 1 cut(s) 1343
ScrFI CCNGG 6 cut(s) 156, 461, 564, 2007, 2049, 2094
SduI GDGCHC 3 cut(s) 642, 1798, 2092
SfaNI GCATC 6 cut(s) 194, 310, 424, 1234, 2053, 2152
SfcI CTRYAG 2 cut(s) 354, 802
SinI GGWCC 5 cut(s) 865, 990, 1219, 1561, 2045
SmiMI CAYNNNNRTG 3 cut(s) 930, 1230, 1758
SmlI CTYRAG 2 cut(s) 176, 635
SmoI CTYRAG 2 cut(s) 176, 635
SphI GCATGC 3 cut(s) 1324, 1670, 2156
SseBI AGGCCT 1 cut(s) 1605
SsiI CCGC 4 cut(s) 106, 1162, 1790, 1903
SspMI CTAG 2 cut(s) 126, 762
StuI AGGCCT 1 cut(s) 1605
StyD4I CCNGG 6 cut(s) 154, 459, 562, 2005, 2047, 2092
StyI CCWWGG 3 cut(s) 715, 1084, 1482
TaaI ACNGT 6 cut(s) 247, 268, 358, 412, 1345, 2125
TaqI TCGA 5 cut(s) 149, 214, 1059, 1352, 1854
TaqII GACCGA 1 cut(s) 1549
TatI WGTACW 2 cut(s) 606, 1287
TauI GCSGC 1 cut(s) 1165
TfiI GAWTC 6 cut(s) 151, 230, 313, 755, 776, 1391
Tru1I TTAA 3 cut(s) 111, 450, 1329
Tru9I TTAA 3 cut(s) 111, 450, 1329
TscAI CASTG 6 cut(s) 141, 273, 301, 943, 1188, 1648
TseFI GTSAC 3 cut(s) 332, 934, 1293
TseI GCWGC 5 cut(s) 195, 1097, 1301, 1456, 1670
Tsp45I GTSAC 3 cut(s) 332, 934, 1293
TspDTI ATGAA 7 cut(s) 491, 854, 983, 1587, 1596, 1742, 1849
TspGWI ACGGA 3 cut(s) 979, 1553, 1931
TspRI CASTG 6 cut(s) 141, 273, 301, 943, 1188, 1648
Van91I CCANNNNNTGG 1 cut(s) 1940
VpaK11BI GGWCC 5 cut(s) 865, 990, 1219, 1561, 2045
XagI CCTNNNNNAGG 1 cut(s) 998
XapI RAATTY 5 cut(s) 454, 549, 568, 1495, 1749
XceI RCATGY 3 cut(s) 1324, 1670, 2156
XspI CTAG 2 cut(s) 126, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.