Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 294, 546 |
| AclWI | GGATC | 1 cut(s) | 596 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AcsI | RAATTY | 1 cut(s) | 75 |
| AgsI | TTSAA | 6 cut(s) | 80, 137, 263, 290, 398, 521 |
| AjnI | CCWGG | 1 cut(s) | 604 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 421, 453 |
| AluBI | AGCT | 1 cut(s) | 124 |
| AluI | AGCT | 1 cut(s) | 124 |
| Alw26I | GTCTC | 3 cut(s) | 294, 488, 505 |
| AlwI | GGATC | 1 cut(s) | 596 |
| AoxI | GGCC | 2 cut(s) | 118, 160 |
| ApoI | RAATTY | 1 cut(s) | 75 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 18 |
| AspS9I | GGNCC | 1 cut(s) | 453 |
| AvaII | GGWCC | 1 cut(s) | 453 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| BccI | CCATC | 4 cut(s) | 47, 152, 205, 272 |
| BceAI | ACGGC | 1 cut(s) | 204 |
| BciT130I | CCWGG | 1 cut(s) | 606 |
| BciVI | GTATCC | 1 cut(s) | 586 |
| BcoDI | GTCTC | 3 cut(s) | 294, 488, 505 |
| BfmI | CTRYAG | 1 cut(s) | 310 |
| BfuI | GTATCC | 1 cut(s) | 586 |
| Bme1390I | CCNGG | 1 cut(s) | 606 |
| Bme18I | GGWCC | 1 cut(s) | 453 |
| BmgT120I | GGNCC | 1 cut(s) | 453 |
| BmrFI | CCNGG | 1 cut(s) | 606 |
| BmsI | GCATC | 3 cut(s) | 96, 541, 563 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 83, 115 |
| BpuEI | CTTGAG | 1 cut(s) | 551 |
| BsaI | GGTCTC | 1 cut(s) | 294 |
| BsaJI | CCNNGG | 1 cut(s) | 472 |
| Bse1I | ACTGG | 1 cut(s) | 231 |
| BseBI | CCWGG | 1 cut(s) | 606 |
| BseDI | CCNNGG | 1 cut(s) | 472 |
| BseGI | GGATG | 1 cut(s) | 440 |
| BseMII | CTCAG | 2 cut(s) | 93, 404 |
| BseNI | ACTGG | 1 cut(s) | 231 |
| BshFI | GGCC | 2 cut(s) | 120, 162 |
| BsmAI | GTCTC | 3 cut(s) | 294, 488, 505 |
| BsnI | GGCC | 2 cut(s) | 120, 162 |
| Bso31I | GGTCTC | 1 cut(s) | 294 |
| Bsp143I | GATC | 1 cut(s) | 601 |
| BspACI | CCGC | 2 cut(s) | 294, 546 |
| BspANI | GGCC | 2 cut(s) | 120, 162 |
| BspCNI | CTCAG | 2 cut(s) | 94, 405 |
| BspPI | GGATC | 1 cut(s) | 596 |
| BspTNI | GGTCTC | 1 cut(s) | 294 |
| BsrI | ACTGG | 1 cut(s) | 231 |
| BssECI | CCNNGG | 1 cut(s) | 472 |
| BssMI | GATC | 1 cut(s) | 601 |
| Bst2UI | CCWGG | 1 cut(s) | 606 |
| Bst4CI | ACNGT | 3 cut(s) | 31, 358, 598 |
| Bst6I | CTCTTC | 2 cut(s) | 84, 311 |
| BstC8I | GCNNGC | 1 cut(s) | 122 |
| BstDEI | CTNAG | 2 cut(s) | 102, 413 |
| BstF5I | GGATG | 1 cut(s) | 440 |
| BstKTI | GATC | 1 cut(s) | 604 |
| BstMAI | GTCTC | 3 cut(s) | 294, 488, 505 |
| BstMBI | GATC | 1 cut(s) | 601 |
| BstNI | CCWGG | 1 cut(s) | 606 |
| BstSCI | CCNGG | 1 cut(s) | 604 |
| BstSFI | CTRYAG | 1 cut(s) | 310 |
| BstX2I | RGATCY | 1 cut(s) | 601 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 226, 450 |
| BstYI | RGATCY | 1 cut(s) | 601 |
| BsuI | GTATCC | 1 cut(s) | 586 |
| BsuRI | GGCC | 2 cut(s) | 120, 162 |
| BtsCI | GGATG | 1 cut(s) | 440 |
| BtsI | GCAGTG | 1 cut(s) | 617 |
| BtsIMutI | CAGTG | 2 cut(s) | 354, 617 |
| Cac8I | GCNNGC | 1 cut(s) | 122 |
| Cfr13I | GGNCC | 1 cut(s) | 453 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 31, 66 |
| CviAII | CATG | 2 cut(s) | 368, 383 |
| CviJI | RGCY | 7 cut(s) | 120, 124, 162, 218, 337, 373, 387 |
| CviKI_1 | RGCY | 7 cut(s) | 120, 124, 162, 218, 337, 373, 387 |
| DdeI | CTNAG | 2 cut(s) | 102, 413 |
| DpnI | GATC | 1 cut(s) | 603 |
| DpnII | GATC | 1 cut(s) | 601 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 2 cut(s) | 84, 311 |
| EarI | CTCTTC | 2 cut(s) | 84, 311 |
| Eco31I | GGTCTC | 1 cut(s) | 294 |
| Eco47I | GGWCC | 1 cut(s) | 453 |
| EcoRI | GAATTC | 1 cut(s) | 75 |
| EcoRII | CCWGG | 1 cut(s) | 604 |
| EcoT22I | ATGCAT | 1 cut(s) | 556 |
| FaeI | CATG | 2 cut(s) | 371, 386 |
| FaiI | YATR | 9 cut(s) | 11, 39, 144, 352, 369, 384, 392, 459, 563 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 513, 545 |
| FatI | CATG | 2 cut(s) | 367, 382 |
| FokI | GGATG | 1 cut(s) | 447 |
| HaeIII | GGCC | 2 cut(s) | 120, 162 |
| Hin1II | CATG | 2 cut(s) | 371, 386 |
| HinfI | GANTC | 3 cut(s) | 290, 364, 629 |
| Hpy188I | TCNGA | 4 cut(s) | 103, 347, 473, 638 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 80, 521 |
| HpyAV | CCTTC | 2 cut(s) | 257, 583 |
| HpyCH4III | ACNGT | 3 cut(s) | 31, 358, 598 |
| HpyCH4V | TGCA | 4 cut(s) | 63, 109, 273, 554 |
| HpyF3I | CTNAG | 2 cut(s) | 102, 413 |
| Hsp92II | CATG | 2 cut(s) | 371, 386 |
| Kzo9I | GATC | 1 cut(s) | 601 |
| LpnPI | CCDG | 8 cut(s) | 36, 95, 134, 176, 212, 232, 591, 618 |
| LweI | GCATC | 3 cut(s) | 96, 541, 563 |
| MaeIII | GTNAC | 2 cut(s) | 31, 167 |
| MalI | GATC | 1 cut(s) | 603 |
| MboI | GATC | 1 cut(s) | 601 |
| MboII | GAAGA | 2 cut(s) | 101, 298 |
| MflI | RGATCY | 1 cut(s) | 601 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluCI | AATT | 6 cut(s) | 75, 197, 243, 285, 445, 566 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MmeI | TCCRAC | 1 cut(s) | 431 |
| MnlI | CCTC | 5 cut(s) | 15, 314, 419, 467, 528 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| Mph1103I | ATGCAT | 1 cut(s) | 556 |
| MroXI | GAANNNNTTC | 1 cut(s) | 18 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 1 cut(s) | 624 |
| MslI | CAYNNNNRTG | 2 cut(s) | 209, 359 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| MspR9I | CCNGG | 1 cut(s) | 606 |
| MvaI | CCWGG | 1 cut(s) | 606 |
| NdeII | GATC | 1 cut(s) | 601 |
| NlaIII | CATG | 2 cut(s) | 371, 386 |
| NsiI | ATGCAT | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 18 |
| PfeI | GAWTC | 3 cut(s) | 290, 364, 629 |
| Psp6I | CCWGG | 1 cut(s) | 604 |
| PspGI | CCWGG | 1 cut(s) | 604 |
| PspPI | GGNCC | 1 cut(s) | 453 |
| PsuI | RGATCY | 1 cut(s) | 601 |
| RseI | CAYNNNNRTG | 2 cut(s) | 209, 359 |
| SaqAI | TTAA | 1 cut(s) | 624 |
| Sau3AI | GATC | 1 cut(s) | 601 |
| Sau96I | GGNCC | 1 cut(s) | 453 |
| ScrFI | CCNGG | 1 cut(s) | 606 |
| SetI | ASST | 5 cut(s) | 126, 268, 306, 458, 478 |
| SfaNI | GCATC | 3 cut(s) | 96, 541, 563 |
| SfcI | CTRYAG | 1 cut(s) | 310 |
| SinI | GGWCC | 1 cut(s) | 453 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 209, 359 |
| SmlI | CTYRAG | 1 cut(s) | 530 |
| SmoI | CTYRAG | 1 cut(s) | 530 |
| Sse9I | AATT | 6 cut(s) | 75, 197, 243, 285, 445, 566 |
| SsiI | CCGC | 2 cut(s) | 294, 546 |
| SspI | AATATT | 1 cut(s) | 253 |
| StyD4I | CCNGG | 1 cut(s) | 604 |
| TaaI | ACNGT | 3 cut(s) | 31, 358, 598 |
| TaqI | TCGA | 2 cut(s) | 234, 587 |
| TasI | AATT | 6 cut(s) | 75, 197, 243, 285, 445, 566 |
| TfiI | GAWTC | 3 cut(s) | 290, 364, 629 |
| Tru1I | TTAA | 1 cut(s) | 624 |
| Tru9I | TTAA | 1 cut(s) | 624 |
| TscAI | CASTG | 2 cut(s) | 361, 624 |
| TspDTI | ATGAA | 2 cut(s) | 356, 379 |
| TspRI | CASTG | 2 cut(s) | 361, 624 |
| VpaK11BI | GGWCC | 1 cut(s) | 453 |
| XapI | RAATTY | 1 cut(s) | 75 |
| XmnI | GAANNNNTTC | 1 cut(s) | 18 |
| Zsp2I | ATGCAT | 1 cut(s) | 556 |