pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 1 - 28 | 4.7e-08 | PPR repeat family |
| PPR_long | PF17177 | 3 - 93 | 1.1e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 3 - 61 | 1.5e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 10 - 43 | 1.6e-11 | PPR repeat |
| PPR_2 | PF13041 | 14 - 63 | 1.7e-20 | PPR repeat family |
| PPR | PF01535 | 17 - 47 | 4.2e-07 | PPR repeat |
| MRP-S27 | PF10037 | 21 - 83 | 3.5e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_3 | PF13812 | 37 - 95 | 5.6e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 45 - 77 | 9.6e-11 | PPR repeat |
| PPR_2 | PF13041 | 53 - 97 | 8.6e-12 | PPR repeat family |
| TPR_24 | PF23276 | 70 - 181 | 7.8e-08 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 81 - 112 | 2.6e-10 | PPR repeat |
| PPR_2 | PF13041 | 84 - 132 | 6.5e-13 | PPR repeat family |
| PPR | PF01535 | 87 - 115 | 5.3e-07 | PPR repeat |
| PPR_long | PF17177 | 107 - 240 | 6e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 119 - 164 | 7.2e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 120 - 168 | 1.2e-16 | PPR repeat family |
| PPR_1 | PF12854 | 120 - 148 | 1.9e-07 | PPR repeat |
| PPR | PF01535 | 123 - 150 | 1.2e-07 | PPR repeat |
| PPR_1 | PF12854 | 151 - 182 | 4.1e-13 | PPR repeat |
| PPR_2 | PF13041 | 154 - 203 | 3.4e-18 | PPR repeat family |
| PPR | PF01535 | 157 - 186 | 5.1e-09 | PPR repeat |
| PPR_1 | PF12854 | 186 - 218 | 6e-07 | PPR repeat |
| PPR_2 | PF13041 | 197 - 238 | 2.2e-09 | PPR repeat family |
| TPR_24 | PF23276 | 204 - 320 | 9.3e-07 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 222 - 249 | 1.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 225 - 273 | 2.7e-16 | PPR repeat family |
| PPR_1 | PF12854 | 255 - 287 | 1.6e-11 | PPR repeat |
| PPR | PF01535 | 263 - 292 | 2.1e-08 | PPR repeat |
| PPR_2 | PF13041 | 267 - 307 | 3.5e-10 | PPR repeat family |
| PPR_2 | PF13041 | 298 - 341 | 6.6e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 477 |
| AciI | CCGC | 2 cut(s) | 154, 732 |
| AclWI | GGATC | 1 cut(s) | 1034 |
| AcsI | RAATTY | 1 cut(s) | 513 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 13 |
| AluBI | AGCT | 6 cut(s) | 104, 532, 562, 716, 847, 1057 |
| AluI | AGCT | 6 cut(s) | 104, 532, 562, 716, 847, 1057 |
| Alw26I | GTCTC | 2 cut(s) | 926, 983 |
| AlwI | GGATC | 1 cut(s) | 1034 |
| AoxI | GGCC | 5 cut(s) | 88, 345, 598, 773, 808 |
| ApeKI | GCWGC | 2 cut(s) | 847, 1054 |
| ApoI | RAATTY | 1 cut(s) | 513 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 456 |
| AspS9I | GGNCC | 3 cut(s) | 4, 808, 891 |
| AsuHPI | GGTGA | 1 cut(s) | 139 |
| AsuII | TTCGAA | 1 cut(s) | 574 |
| AvaII | GGWCC | 2 cut(s) | 4, 891 |
| BauI | CACGAG | 1 cut(s) | 422 |
| BbvI | GCAGC | 2 cut(s) | 834, 1066 |
| BccI | CCATC | 4 cut(s) | 190, 485, 590, 878 |
| BcoDI | GTCTC | 2 cut(s) | 926, 983 |
| BfaI | CTAG | 1 cut(s) | 548 |
| BfmI | CTRYAG | 1 cut(s) | 984 |
| BisI | GCNGC | 2 cut(s) | 848, 1055 |
| BlsI | GCNGC | 2 cut(s) | 849, 1056 |
| Bme18I | GGWCC | 2 cut(s) | 4, 891 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 808, 891 |
| BmsI | GCATC | 3 cut(s) | 166, 534, 979 |
| BpmI | CTGGAG | 1 cut(s) | 864 |
| Bpu14I | TTCGAA | 1 cut(s) | 574 |
| BpuEI | CTTGAG | 1 cut(s) | 989 |
| BsaI | GGTCTC | 1 cut(s) | 983 |
| BsaJI | CCNNGG | 2 cut(s) | 351, 910 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bse1I | ACTGG | 1 cut(s) | 91 |
| Bse3DI | GCAATG | 1 cut(s) | 309 |
| BseDI | CCNNGG | 2 cut(s) | 351, 910 |
| BseGI | GGATG | 3 cut(s) | 201, 313, 878 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BseMI | GCAATG | 1 cut(s) | 309 |
| BseMII | CTCAG | 2 cut(s) | 531, 842 |
| BseNI | ACTGG | 1 cut(s) | 91 |
| BseRI | GAGGAG | 1 cut(s) | 312 |
| BseXI | GCAGC | 2 cut(s) | 834, 1066 |
| BshFI | GGCC | 5 cut(s) | 90, 347, 600, 775, 810 |
| BsiSI | CCGG | 1 cut(s) | 1043 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BsmAI | GTCTC | 2 cut(s) | 926, 983 |
| BsnI | GGCC | 5 cut(s) | 90, 347, 600, 775, 810 |
| Bso31I | GGTCTC | 1 cut(s) | 983 |
| Bsp119I | TTCGAA | 1 cut(s) | 574 |
| Bsp143I | GATC | 2 cut(s) | 328, 1039 |
| Bsp19I | CCATGG | 1 cut(s) | 351 |
| BspACI | CCGC | 2 cut(s) | 154, 732 |
| BspANI | GGCC | 5 cut(s) | 90, 347, 600, 775, 810 |
| BspCNI | CTCAG | 2 cut(s) | 532, 843 |
| BspMAI | CTGCAG | 1 cut(s) | 988 |
| BspPI | GGATC | 1 cut(s) | 1034 |
| BspT104I | TTCGAA | 1 cut(s) | 574 |
| BspTNI | GGTCTC | 1 cut(s) | 983 |
| BsrDI | GCAATG | 1 cut(s) | 309 |
| BsrI | ACTGG | 1 cut(s) | 91 |
| BssECI | CCNNGG | 2 cut(s) | 351, 910 |
| BssMI | GATC | 2 cut(s) | 328, 1039 |
| BssSI | CACGAG | 1 cut(s) | 422 |
| BssT1I | CCWWGG | 1 cut(s) | 351 |
| Bst2BI | CACGAG | 1 cut(s) | 422 |
| Bst4CI | ACNGT | 8 cut(s) | 62, 217, 256, 284, 290, 409, 586, 929 |
| Bst6I | CTCTTC | 1 cut(s) | 14 |
| BstBI | TTCGAA | 1 cut(s) | 574 |
| BstDEI | CTNAG | 2 cut(s) | 540, 851 |
| BstDSI | CCRYGG | 1 cut(s) | 351 |
| BstF5I | GGATG | 3 cut(s) | 201, 313, 878 |
| BstKTI | GATC | 2 cut(s) | 331, 1042 |
| BstMAI | GTCTC | 2 cut(s) | 926, 983 |
| BstMBI | GATC | 2 cut(s) | 328, 1039 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 87 |
| BstSFI | CTRYAG | 1 cut(s) | 984 |
| BstV1I | GCAGC | 2 cut(s) | 834, 1066 |
| BstX2I | RGATCY | 1 cut(s) | 1039 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 217, 888 |
| BstYI | RGATCY | 1 cut(s) | 1039 |
| BsuRI | GGCC | 5 cut(s) | 90, 347, 600, 775, 810 |
| BtgI | CCRYGG | 1 cut(s) | 351 |
| BtsCI | GGATG | 3 cut(s) | 201, 313, 878 |
| BtsIMutI | CAGTG | 2 cut(s) | 98, 582 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 808, 891 |
| CseI | GACGC | 2 cut(s) | 431, 981 |
| CviAII | CATG | 3 cut(s) | 352, 821, 939 |
| DdeI | CTNAG | 2 cut(s) | 540, 851 |
| DpnI | GATC | 2 cut(s) | 330, 1041 |
| DpnII | GATC | 2 cut(s) | 328, 1039 |
| Eam1104I | CTCTTC | 1 cut(s) | 14 |
| EarI | CTCTTC | 1 cut(s) | 14 |
| Eco130I | CCWWGG | 1 cut(s) | 351 |
| Eco147I | AGGCCT | 1 cut(s) | 347 |
| Eco31I | GGTCTC | 1 cut(s) | 983 |
| Eco47I | GGWCC | 2 cut(s) | 4, 891 |
| EcoO109I | RGGNCCY | 1 cut(s) | 808 |
| EcoRI | GAATTC | 1 cut(s) | 513 |
| EcoT14I | CCWWGG | 1 cut(s) | 351 |
| ErhI | CCWWGG | 1 cut(s) | 351 |
| FaeI | CATG | 3 cut(s) | 355, 824, 942 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 654, 686, 951, 983 |
| FatI | CATG | 3 cut(s) | 351, 820, 938 |
| Fnu4HI | GCNGC | 2 cut(s) | 848, 1055 |
| FokI | GGATG | 3 cut(s) | 208, 320, 885 |
| Fsp4HI | GCNGC | 2 cut(s) | 848, 1055 |
| FspBI | CTAG | 1 cut(s) | 548 |
| GluI | GCNGC | 2 cut(s) | 848, 1055 |
| GsuI | CTGGAG | 1 cut(s) | 864 |
| HaeIII | GGCC | 5 cut(s) | 90, 347, 600, 775, 810 |
| HapII | CCGG | 1 cut(s) | 1043 |
| HgaI | GACGC | 2 cut(s) | 431, 981 |
| Hin1II | CATG | 3 cut(s) | 355, 824, 942 |
| HincII | GTYRAC | 1 cut(s) | 996 |
| HindII | GTYRAC | 1 cut(s) | 996 |
| HinfI | GANTC | 5 cut(s) | 67, 232, 728, 802, 1067 |
| HpaII | CCGG | 1 cut(s) | 1043 |
| HphI | GGTGA | 1 cut(s) | 139 |
| Hpy166II | GTNNAC | 3 cut(s) | 557, 685, 996 |
| Hpy188I | TCNGA | 4 cut(s) | 16, 366, 541, 911 |
| Hpy188III | TCNNGA | 7 cut(s) | 146, 422, 461, 518, 881, 959, 1071 |
| Hpy8I | GTNNAC | 3 cut(s) | 557, 685, 996 |
| Hpy99I | CGWCG | 2 cut(s) | 50, 447 |
| HpyAV | CCTTC | 6 cut(s) | 169, 185, 581, 695, 863, 1021 |
| HpyCH4III | ACNGT | 8 cut(s) | 62, 217, 256, 284, 290, 409, 586, 929 |
| HpyCH4IV | ACGT | 1 cut(s) | 45 |
| HpyCH4V | TGCA | 5 cut(s) | 81, 396, 711, 986, 1054 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 87 |
| HpyF3I | CTNAG | 2 cut(s) | 540, 851 |
| HpySE526I | ACGT | 1 cut(s) | 45 |
| Hsp92II | CATG | 3 cut(s) | 355, 824, 942 |
| Kzo9I | GATC | 2 cut(s) | 328, 1039 |
| LmnI | GCTCC | 2 cut(s) | 43, 299 |
| Lsp1109I | GCAGC | 2 cut(s) | 834, 1066 |
| LweI | GCATC | 3 cut(s) | 166, 534, 979 |
| MaeI | CTAG | 1 cut(s) | 548 |
| MaeII | ACGT | 1 cut(s) | 45 |
| MaeIII | GTNAC | 5 cut(s) | 49, 259, 284, 371, 605 |
| MalI | GATC | 2 cut(s) | 330, 1041 |
| MboI | GATC | 2 cut(s) | 328, 1039 |
| MflI | RGATCY | 1 cut(s) | 1039 |
| MluCI | AATT | 7 cut(s) | 82, 513, 635, 723, 831, 954, 1004 |
| MmeI | TCCRAC | 1 cut(s) | 869 |
| MnlI | CCTC | 9 cut(s) | 17, 23, 102, 290, 304, 358, 857, 905, 966 |
| MroXI | GAANNNNTTC | 1 cut(s) | 456 |
| MseI | TTAA | 6 cut(s) | 384, 642, 672, 827, 920, 1061 |
| MslI | CAYNNNNRTG | 1 cut(s) | 797 |
| MspA1I | CMGCKG | 1 cut(s) | 1057 |
| MspI | CCGG | 1 cut(s) | 1043 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 87 |
| NcoI | CCATGG | 1 cut(s) | 351 |
| NdeII | GATC | 2 cut(s) | 328, 1039 |
| NlaIII | CATG | 3 cut(s) | 355, 824, 942 |
| NspV | TTCGAA | 1 cut(s) | 574 |
| PceI | AGGCCT | 1 cut(s) | 347 |
| PdmI | GAANNNNTTC | 1 cut(s) | 456 |
| PfeI | GAWTC | 5 cut(s) | 67, 232, 728, 802, 1067 |
| PkrI | GCNGC | 2 cut(s) | 849, 1056 |
| PsiI | TTATAA | 1 cut(s) | 477 |
| PspPI | GGNCC | 3 cut(s) | 4, 808, 891 |
| PstI | CTGCAG | 1 cut(s) | 988 |
| PsuI | RGATCY | 1 cut(s) | 1039 |
| PvuII | CAGCTG | 1 cut(s) | 1057 |
| RseI | CAYNNNNRTG | 1 cut(s) | 797 |
| SaqAI | TTAA | 6 cut(s) | 384, 642, 672, 827, 920, 1061 |
| SatI | GCNGC | 2 cut(s) | 848, 1055 |
| Sau3AI | GATC | 2 cut(s) | 328, 1039 |
| Sau96I | GGNCC | 3 cut(s) | 4, 808, 891 |
| SfaNI | GCATC | 3 cut(s) | 166, 534, 979 |
| SfcI | CTRYAG | 1 cut(s) | 984 |
| SfuI | TTCGAA | 1 cut(s) | 574 |
| SinI | GGWCC | 2 cut(s) | 4, 891 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 797 |
| SmlI | CTYRAG | 1 cut(s) | 968 |
| SmoI | CTYRAG | 1 cut(s) | 968 |
| Sse9I | AATT | 7 cut(s) | 82, 513, 635, 723, 831, 954, 1004 |
| SseBI | AGGCCT | 1 cut(s) | 347 |
| SsiI | CCGC | 2 cut(s) | 154, 732 |
| SspMI | CTAG | 1 cut(s) | 548 |
| StuI | AGGCCT | 1 cut(s) | 347 |
| StyI | CCWWGG | 1 cut(s) | 351 |
| TaaI | ACNGT | 8 cut(s) | 62, 217, 256, 284, 290, 409, 586, 929 |
| TaiI | ACGT | 1 cut(s) | 48 |
| TaqI | TCGA | 2 cut(s) | 574, 1025 |
| TasI | AATT | 7 cut(s) | 82, 513, 635, 723, 831, 954, 1004 |
| TfiI | GAWTC | 5 cut(s) | 67, 232, 728, 802, 1067 |
| Tru1I | TTAA | 6 cut(s) | 384, 642, 672, 827, 920, 1061 |
| Tru9I | TTAA | 6 cut(s) | 384, 642, 672, 827, 920, 1061 |
| TscAI | CASTG | 2 cut(s) | 98, 589 |
| TseI | GCWGC | 2 cut(s) | 847, 1054 |
| TspDTI | ATGAA | 1 cut(s) | 962 |
| TspGWI | ACGGA | 1 cut(s) | 402 |
| TspRI | CASTG | 2 cut(s) | 98, 589 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 891 |
| XapI | RAATTY | 1 cut(s) | 513 |
| XmnI | GAANNNNTTC | 1 cut(s) | 456 |
| XspI | CTAG | 1 cut(s) | 548 |