Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_1 | PF00515 | 182 - 215 | 4.6e-06 | Tetratricopeptide repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 202 |
| AccIII | TCCGGA | 3 cut(s) | 949, 1042, 1288 |
| AciI | CCGC | 3 cut(s) | 621, 1606, 1700 |
| AclWI | GGATC | 5 cut(s) | 20, 33, 941, 1273, 1589 |
| AcoI | YGGCCR | 2 cut(s) | 75, 108 |
| AcsI | RAATTY | 3 cut(s) | 928, 1279, 1633 |
| AcuI | CTGAAG | 6 cut(s) | 183, 273, 762, 1169, 1328, 1356 |
| AcvI | CACGTG | 1 cut(s) | 278 |
| AfaI | GTAC | 4 cut(s) | 387, 522, 691, 1528 |
| AflIII | ACRYGT | 1 cut(s) | 277 |
| AjnI | CCWGG | 3 cut(s) | 86, 351, 1261 |
| AluBI | AGCT | 8 cut(s) | 266, 314, 551, 780, 1342, 1497, 1542, 1709 |
| AluI | AGCT | 8 cut(s) | 266, 314, 551, 780, 1342, 1497, 1542, 1709 |
| Alw21I | GWGCWC | 1 cut(s) | 620 |
| Alw26I | GTCTC | 7 cut(s) | 610, 746, 763, 816, 1044, 1290, 1377 |
| AlwI | GGATC | 5 cut(s) | 20, 33, 941, 1273, 1589 |
| Ama87I | CYCGRG | 1 cut(s) | 1689 |
| Aor13HI | TCCGGA | 3 cut(s) | 949, 1042, 1288 |
| AoxI | GGCC | 4 cut(s) | 75, 108, 158, 409 |
| ApeKI | GCWGC | 7 cut(s) | 179, 263, 311, 764, 845, 962, 1816 |
| ApoI | RAATTY | 3 cut(s) | 928, 1279, 1633 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1341 |
| AspLEI | GCGC | 1 cut(s) | 204 |
| AsuC2I | CCSGG | 1 cut(s) | 206 |
| AsuHPI | GGTGA | 4 cut(s) | 1107, 1119, 1499, 1725 |
| AvaI | CYCGRG | 1 cut(s) | 1689 |
| BalI | TGGCCA | 1 cut(s) | 110 |
| BamHI | GGATCC | 1 cut(s) | 25 |
| BauI | CACGAG | 1 cut(s) | 1476 |
| BbrPI | CACGTG | 1 cut(s) | 278 |
| BbsI | GAAGAC | 3 cut(s) | 724, 1716, 1808 |
| Bbv12I | GWGCWC | 1 cut(s) | 620 |
| BbvI | GCAGC | 7 cut(s) | 166, 275, 323, 751, 857, 949, 1803 |
| BccI | CCATC | 8 cut(s) | 16, 100, 124, 229, 424, 436, 1645, 1759 |
| BceAI | ACGGC | 2 cut(s) | 424, 1434 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 44, 78 |
| BciT130I | CCWGG | 3 cut(s) | 88, 353, 1263 |
| BciVI | GTATCC | 1 cut(s) | 946 |
| BclI | TGATCA | 1 cut(s) | 1026 |
| BcnI | CCSGG | 1 cut(s) | 206 |
| BcoDI | GTCTC | 7 cut(s) | 610, 746, 763, 816, 1044, 1290, 1377 |
| BfaI | CTAG | 3 cut(s) | 240, 1820, 1862 |
| BfmI | CTRYAG | 1 cut(s) | 786 |
| BfuI | GTATCC | 1 cut(s) | 946 |
| BisI | GCNGC | 8 cut(s) | 180, 264, 312, 765, 846, 963, 1607, 1817 |
| BlsI | GCNGC | 8 cut(s) | 181, 265, 313, 766, 847, 964, 1608, 1818 |
| BmcAI | AGTACT | 1 cut(s) | 1528 |
| Bme1390I | CCNGG | 4 cut(s) | 88, 206, 353, 1263 |
| BmeT110I | CYCGRG | 1 cut(s) | 1689 |
| BmiI | GGNNCC | 2 cut(s) | 27, 993 |
| BmrFI | CCNGG | 4 cut(s) | 88, 206, 353, 1263 |
| BpiI | GAAGAC | 3 cut(s) | 724, 1716, 1808 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 743, 775, 1513, 1545 |
| Bpu10I | CCTNAGC | 3 cut(s) | 48, 614, 675 |
| BpuEI | CTTGAG | 3 cut(s) | 308, 1003, 1088 |
| BpuMI | CCSGG | 1 cut(s) | 206 |
| BsaAI | YACGTR | 2 cut(s) | 278, 385 |
| BsaJI | CCNNGG | 3 cut(s) | 352, 984, 1743 |
| BsaWI | WCCGGW | 5 cut(s) | 949, 1042, 1174, 1288, 1829 |
| Bse118I | RCCGGY | 1 cut(s) | 73 |
| Bse1I | ACTGG | 2 cut(s) | 528, 726 |
| Bse3DI | GCAATG | 4 cut(s) | 1097, 1608, 1725, 1766 |
| BseAI | TCCGGA | 3 cut(s) | 949, 1042, 1288 |
| BseBI | CCWGG | 3 cut(s) | 88, 353, 1263 |
| BseDI | CCNNGG | 3 cut(s) | 352, 984, 1743 |
| BseGI | GGATG | 7 cut(s) | 18, 72, 96, 416, 676, 1073, 1770 |
| BseMI | GCAATG | 4 cut(s) | 1097, 1608, 1725, 1766 |
| BseMII | CTCAG | 8 cut(s) | 62, 210, 329, 507, 605, 846, 888, 928 |
| BseNI | ACTGG | 2 cut(s) | 528, 726 |
| BseRI | GAGGAG | 3 cut(s) | 1001, 1521, 1797 |
| BseX3I | CGGCCG | 1 cut(s) | 75 |
| BseXI | GCAGC | 7 cut(s) | 166, 275, 323, 751, 857, 949, 1803 |
| BseYI | CCCAGC | 1 cut(s) | 904 |
| BsgI | GTGCAG | 1 cut(s) | 693 |
| Bsh1236I | CGCG | 1 cut(s) | 202 |
| Bsh1285I | CGRYCG | 1 cut(s) | 78 |
| BshFI | GGCC | 4 cut(s) | 77, 110, 160, 411 |
| BsiEI | CGRYCG | 1 cut(s) | 78 |
| BsiHKAI | GWGCWC | 1 cut(s) | 620 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1689 |
| BsiSI | CCGG | 7 cut(s) | 74, 206, 950, 1043, 1175, 1289, 1830 |
| BsmAI | GTCTC | 7 cut(s) | 610, 746, 763, 816, 1044, 1290, 1377 |
| BsmI | GAATGC | 1 cut(s) | 313 |
| BsnI | GGCC | 4 cut(s) | 77, 110, 160, 411 |
| BsoBI | CYCGRG | 1 cut(s) | 1689 |
| Bsp1286I | GDGCHC | 1 cut(s) | 620 |
| Bsp13I | TCCGGA | 3 cut(s) | 949, 1042, 1288 |
| Bsp143I | GATC | 7 cut(s) | 25, 431, 917, 946, 1026, 1265, 1594 |
| BspACI | CCGC | 3 cut(s) | 621, 1606, 1700 |
| BspANI | GGCC | 4 cut(s) | 77, 110, 160, 411 |
| BspCNI | CTCAG | 8 cut(s) | 61, 211, 328, 508, 606, 847, 887, 927 |
| BspEI | TCCGGA | 3 cut(s) | 949, 1042, 1288 |
| BspFNI | CGCG | 1 cut(s) | 202 |
| BspLI | GGNNCC | 2 cut(s) | 27, 993 |
| BspPI | GGATC | 5 cut(s) | 20, 33, 941, 1273, 1589 |
| BspQI | GCTCTTC | 1 cut(s) | 1332 |
| BsrDI | GCAATG | 4 cut(s) | 1097, 1608, 1725, 1766 |
| BsrFI | RCCGGY | 1 cut(s) | 73 |
| BsrI | ACTGG | 2 cut(s) | 528, 726 |
| BssAI | RCCGGY | 1 cut(s) | 73 |
| BssECI | CCNNGG | 3 cut(s) | 352, 984, 1743 |
| BssMI | GATC | 7 cut(s) | 25, 431, 917, 946, 1026, 1265, 1594 |
| BssSI | CACGAG | 1 cut(s) | 1476 |
| BssT1I | CCWWGG | 1 cut(s) | 1743 |
| Bst2BI | CACGAG | 1 cut(s) | 1476 |
| Bst2UI | CCWGG | 3 cut(s) | 88, 353, 1263 |
| Bst4CI | ACNGT | 1 cut(s) | 757 |
| Bst6I | CTCTTC | 3 cut(s) | 204, 249, 1332 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 533 |
| BstBAI | YACGTR | 2 cut(s) | 278, 385 |
| BstC8I | GCNNGC | 4 cut(s) | 75, 273, 448, 888 |
| BstF5I | GGATG | 7 cut(s) | 18, 72, 96, 416, 676, 1073, 1770 |
| BstFNI | CGCG | 1 cut(s) | 202 |
| BstHHI | GCGC | 1 cut(s) | 204 |
| BstKTI | GATC | 7 cut(s) | 28, 434, 920, 949, 1029, 1268, 1597 |
| BstMAI | GTCTC | 7 cut(s) | 610, 746, 763, 816, 1044, 1290, 1377 |
| BstMBI | GATC | 7 cut(s) | 25, 431, 917, 946, 1026, 1265, 1594 |
| BstMCI | CGRYCG | 1 cut(s) | 78 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 83, 272, 533, 1029, 1706, 1715 |
| BstNI | CCWGG | 3 cut(s) | 88, 353, 1263 |
| BstNSI | RCATGY | 2 cut(s) | 275, 450 |
| BstSCI | CCNGG | 4 cut(s) | 86, 204, 351, 1261 |
| BstSFI | CTRYAG | 1 cut(s) | 786 |
| BstSNI | TACGTA | 1 cut(s) | 385 |
| BstUI | CGCG | 1 cut(s) | 202 |
| BstV1I | GCAGC | 7 cut(s) | 166, 275, 323, 751, 857, 949, 1803 |
| BstV2I | GAAGAC | 3 cut(s) | 724, 1716, 1808 |
| BstX2I | RGATCY | 2 cut(s) | 25, 1594 |
| BstYI | RGATCY | 2 cut(s) | 25, 1594 |
| BstZI | CGGCCG | 1 cut(s) | 75 |
| BsuI | GTATCC | 1 cut(s) | 946 |
| BsuRI | GGCC | 4 cut(s) | 77, 110, 160, 411 |
| BtgZI | GCGATG | 1 cut(s) | 1862 |
| BtsCI | GGATG | 7 cut(s) | 18, 72, 96, 416, 676, 1073, 1770 |
| BtsI | GCAGTG | 1 cut(s) | 706 |
| BtsIMutI | CAGTG | 1 cut(s) | 706 |
| Cac8I | GCNNGC | 4 cut(s) | 75, 273, 448, 888 |
| CfoI | GCGC | 1 cut(s) | 204 |
| Cfr10I | RCCGGY | 1 cut(s) | 73 |
| CseI | GACGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 4 cut(s) | 386, 521, 690, 1527 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1263, 1298 |
| CviQI | GTAC | 4 cut(s) | 386, 521, 690, 1527 |
| DpnI | GATC | 7 cut(s) | 27, 433, 919, 948, 1028, 1267, 1596 |
| DpnII | GATC | 7 cut(s) | 25, 431, 917, 946, 1026, 1265, 1594 |
| DraI | TTTAAA | 3 cut(s) | 894, 1141, 1258 |
| EaeI | YGGCCR | 2 cut(s) | 75, 108 |
| EagI | CGGCCG | 1 cut(s) | 75 |
| Eam1104I | CTCTTC | 3 cut(s) | 204, 249, 1332 |
| EarI | CTCTTC | 3 cut(s) | 204, 249, 1332 |
| EclXI | CGGCCG | 1 cut(s) | 75 |
| Eco105I | TACGTA | 1 cut(s) | 385 |
| Eco130I | CCWWGG | 1 cut(s) | 1743 |
| Eco147I | AGGCCT | 1 cut(s) | 160 |
| Eco52I | CGGCCG | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 6 cut(s) | 183, 273, 762, 1169, 1328, 1356 |
| Eco72I | CACGTG | 1 cut(s) | 278 |
| Eco88I | CYCGRG | 1 cut(s) | 1689 |
| EcoRII | CCWGG | 3 cut(s) | 86, 351, 1261 |
| EcoT14I | CCWWGG | 1 cut(s) | 1743 |
| EcoT22I | ATGCAT | 1 cut(s) | 273 |
| ErhI | CCWWGG | 1 cut(s) | 1743 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 386, 418 |
| FauNDI | CATATG | 1 cut(s) | 529 |
| FbaI | TGATCA | 1 cut(s) | 1026 |
| Fnu4HI | GCNGC | 8 cut(s) | 180, 264, 312, 765, 846, 963, 1607, 1817 |
| FokI | GGATG | 7 cut(s) | 25, 79, 103, 403, 683, 1060, 1777 |
| Fsp4HI | GCNGC | 8 cut(s) | 180, 264, 312, 765, 846, 963, 1607, 1817 |
| FspBI | CTAG | 3 cut(s) | 240, 1820, 1862 |
| GlaI | GCGC | 1 cut(s) | 203 |
| GluI | GCNGC | 8 cut(s) | 180, 264, 312, 765, 846, 963, 1607, 1817 |
| GsaI | CCCAGC | 1 cut(s) | 908 |
| HaeIII | GGCC | 4 cut(s) | 77, 110, 160, 411 |
| HapII | CCGG | 7 cut(s) | 74, 206, 950, 1043, 1175, 1289, 1830 |
| HgaI | GACGC | 1 cut(s) | 234 |
| HhaI | GCGC | 1 cut(s) | 204 |
| Hin6I | GCGC | 1 cut(s) | 202 |
| HinP1I | GCGC | 1 cut(s) | 202 |
| HinfI | GANTC | 9 cut(s) | 61, 328, 835, 851, 1385, 1639, 1681, 1739, 1774 |
| HpaII | CCGG | 7 cut(s) | 74, 206, 950, 1043, 1175, 1289, 1830 |
| HphI | GGTGA | 4 cut(s) | 1107, 1119, 1499, 1725 |
| Hpy166II | GTNNAC | 1 cut(s) | 1115 |
| Hpy8I | GTNNAC | 1 cut(s) | 1115 |
| Hpy99I | CGWCG | 1 cut(s) | 250 |
| HpyAV | CCTTC | 6 cut(s) | 422, 503, 1210, 1478, 1784, 1883 |
| HpyCH4III | ACNGT | 1 cut(s) | 757 |
| HpyCH4IV | ACGT | 2 cut(s) | 277, 384 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 83, 272, 533, 1029, 1706, 1715 |
| HpySE526I | ACGT | 2 cut(s) | 277, 384 |
| HspAI | GCGC | 1 cut(s) | 202 |
| Kpn2I | TCCGGA | 3 cut(s) | 949, 1042, 1288 |
| KroI | GCCGGC | 1 cut(s) | 73 |
| KroNI | GCCGGC | 1 cut(s) | 75 |
| Ksp22I | TGATCA | 1 cut(s) | 1026 |
| Kzo9I | GATC | 7 cut(s) | 25, 431, 917, 946, 1026, 1265, 1594 |
| LguI | GCTCTTC | 1 cut(s) | 1332 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| Lsp1109I | GCAGC | 7 cut(s) | 166, 275, 323, 751, 857, 949, 1803 |
| MaeI | CTAG | 3 cut(s) | 240, 1820, 1862 |
| MaeII | ACGT | 2 cut(s) | 277, 384 |
| MaeIII | GTNAC | 4 cut(s) | 296, 470, 1125, 1731 |
| MalI | GATC | 7 cut(s) | 27, 433, 919, 948, 1028, 1267, 1596 |
| MboI | GATC | 7 cut(s) | 25, 431, 917, 946, 1026, 1265, 1594 |
| MfeI | CAATTG | 2 cut(s) | 188, 590 |
| MflI | RGATCY | 2 cut(s) | 25, 1594 |
| MhlI | GDGCHC | 1 cut(s) | 620 |
| MlsI | TGGCCA | 1 cut(s) | 110 |
| MluNI | TGGCCA | 1 cut(s) | 110 |
| MlyI | GAGTC | 6 cut(s) | 70, 829, 845, 1379, 1648, 1748 |
| MmeI | TCCRAC | 2 cut(s) | 44, 1418 |
| Mox20I | TGGCCA | 1 cut(s) | 110 |
| Mph1103I | ATGCAT | 1 cut(s) | 273 |
| MroI | TCCGGA | 3 cut(s) | 949, 1042, 1288 |
| MroNI | GCCGGC | 1 cut(s) | 73 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1341 |
| MscI | TGGCCA | 1 cut(s) | 110 |
| MseI | TTAA | 7 cut(s) | 461, 893, 968, 1008, 1140, 1257, 1299 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| Msp20I | TGGCCA | 1 cut(s) | 110 |
| MspI | CCGG | 7 cut(s) | 74, 206, 950, 1043, 1175, 1289, 1830 |
| MspR9I | CCNGG | 4 cut(s) | 88, 206, 353, 1263 |
| MunI | CAATTG | 2 cut(s) | 188, 590 |
| Mva1269I | GAATGC | 1 cut(s) | 313 |
| MvaI | CCWGG | 3 cut(s) | 88, 353, 1263 |
| MvnI | CGCG | 1 cut(s) | 202 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 83, 272, 533, 1029, 1706, 1715 |
| NaeI | GCCGGC | 1 cut(s) | 75 |
| NciI | CCSGG | 1 cut(s) | 206 |
| NdeI | CATATG | 1 cut(s) | 529 |
| NdeII | GATC | 7 cut(s) | 25, 431, 917, 946, 1026, 1265, 1594 |
| NgoMIV | GCCGGC | 1 cut(s) | 73 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 993 |
| NmeAIII | GCCGAG | 1 cut(s) | 208 |
| NmuCI | GTSAC | 2 cut(s) | 1125, 1731 |
| NsiI | ATGCAT | 1 cut(s) | 273 |
| NspI | RCATGY | 2 cut(s) | 275, 450 |
| PaeI | GCATGC | 2 cut(s) | 275, 450 |
| PceI | AGGCCT | 1 cut(s) | 160 |
| PciSI | GCTCTTC | 1 cut(s) | 1332 |
| PctI | GAATGC | 1 cut(s) | 313 |
| PdiI | GCCGGC | 1 cut(s) | 75 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1341 |
| PfeI | GAWTC | 3 cut(s) | 328, 1681, 1774 |
| PkrI | GCNGC | 8 cut(s) | 181, 265, 313, 766, 847, 964, 1608, 1818 |
| PleI | GAGTC | 6 cut(s) | 69, 829, 845, 1379, 1647, 1747 |
| PmaCI | CACGTG | 1 cut(s) | 278 |
| PmlI | CACGTG | 1 cut(s) | 278 |
| PpsI | GAGTC | 6 cut(s) | 69, 829, 845, 1379, 1647, 1747 |
| Ppu21I | YACGTR | 2 cut(s) | 278, 385 |
| Psp6I | CCWGG | 3 cut(s) | 86, 351, 1261 |
| PspCI | CACGTG | 1 cut(s) | 278 |
| PspFI | CCCAGC | 1 cut(s) | 904 |
| PspGI | CCWGG | 3 cut(s) | 86, 351, 1261 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 993 |
| PsuI | RGATCY | 2 cut(s) | 25, 1594 |
| RsaI | GTAC | 4 cut(s) | 387, 522, 691, 1528 |
| RsaNI | GTAC | 4 cut(s) | 386, 521, 690, 1527 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SapI | GCTCTTC | 1 cut(s) | 1332 |
| SaqAI | TTAA | 7 cut(s) | 461, 893, 968, 1008, 1140, 1257, 1299 |
| SatI | GCNGC | 8 cut(s) | 180, 264, 312, 765, 846, 963, 1607, 1817 |
| Sau3AI | GATC | 7 cut(s) | 25, 431, 917, 946, 1026, 1265, 1594 |
| ScaI | AGTACT | 1 cut(s) | 1528 |
| SchI | GAGTC | 6 cut(s) | 70, 829, 845, 1379, 1648, 1748 |
| ScrFI | CCNGG | 4 cut(s) | 88, 206, 353, 1263 |
| SduI | GDGCHC | 1 cut(s) | 620 |
| SfcI | CTRYAG | 1 cut(s) | 786 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| SmlI | CTYRAG | 3 cut(s) | 323, 1018, 1103 |
| SmoI | CTYRAG | 3 cut(s) | 323, 1018, 1103 |
| SnaBI | TACGTA | 1 cut(s) | 385 |
| SphI | GCATGC | 2 cut(s) | 275, 450 |
| SseBI | AGGCCT | 1 cut(s) | 160 |
| SsiI | CCGC | 3 cut(s) | 621, 1606, 1700 |
| SspI | AATATT | 1 cut(s) | 1509 |
| SspMI | CTAG | 3 cut(s) | 240, 1820, 1862 |
| StuI | AGGCCT | 1 cut(s) | 160 |
| StyD4I | CCNGG | 4 cut(s) | 86, 204, 351, 1261 |
| StyI | CCWWGG | 1 cut(s) | 1743 |
| TaaI | ACNGT | 1 cut(s) | 757 |
| TaiI | ACGT | 2 cut(s) | 280, 387 |
| TaqI | TCGA | 3 cut(s) | 750, 1433, 1538 |
| TatI | WGTACW | 1 cut(s) | 1526 |
| TauI | GCSGC | 1 cut(s) | 1609 |
| TfiI | GAWTC | 3 cut(s) | 328, 1681, 1774 |
| Tru1I | TTAA | 7 cut(s) | 461, 893, 968, 1008, 1140, 1257, 1299 |
| Tru9I | TTAA | 7 cut(s) | 461, 893, 968, 1008, 1140, 1257, 1299 |
| TscAI | CASTG | 1 cut(s) | 706 |
| TseFI | GTSAC | 2 cut(s) | 1125, 1731 |
| TseI | GCWGC | 7 cut(s) | 179, 263, 311, 764, 845, 962, 1816 |
| Tsp45I | GTSAC | 2 cut(s) | 1125, 1731 |
| TspGWI | ACGGA | 1 cut(s) | 707 |
| TspRI | CASTG | 1 cut(s) | 706 |
| XapI | RAATTY | 3 cut(s) | 928, 1279, 1633 |
| XceI | RCATGY | 2 cut(s) | 275, 450 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1341 |
| XspI | CTAG | 3 cut(s) | 240, 1820, 1862 |
| ZrmI | AGTACT | 1 cut(s) | 1528 |
| Zsp2I | ATGCAT | 1 cut(s) | 273 |