Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Reverse (-)

34451950 .. 34459707

Gene Structure 7758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40940.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGATGATGATGCTCAGCCGCAGAACAAGAGGTATGCTTTCTTCTGGCCTTCCTTCTTCTTTTGACAACTTGACGGCCCTCTTTCATTCCAAATTTGGAGATACCCAGGTTTTGAGAGACCCGCCCACAATCAGTAATGTGGAGCAAACCTTGAATATGTTCGATAAAATGCTTCACATGCGTCCTGTGCCTCCTGTCGCCTGCTTCAGCCAACTCTTGGCTCGAATAGCTAGATTGGAGCGTTATGATGTAGTCATTCCTCTTTTTAAACAAATGGGCGTCATGGGAATTGCTCCAGATGCTTCTACTCTCAACGTTGTCACTAATTGCTACTGTCATTTGAAACATGCCCCCGGGTTGGGTTTACCTGTTTTACCACACTTCTTTAAACTGGGTCTACAACTAGACATCACCACCTTCACCGCTCTCATCAACTCCTTTCTTCTTCAAACCACCGTACACCCGAAGACCTCAAACGCCAAACTCAATTATCTTGACTATGCCTTGAACATGTTCCATGAAATGCTTCGCACACGTCCTCTGCCTTCTGTTATCTCTTTCACTAAGATACTGGGCCACCTTGTCAAATTGAAGCACTACTTTGCTGTCATTCCTCTCTTTCAGCAAATGCGTCTGCTGATTGCTCCTAATCACTATACTCTGTCTATTATCATCAACTGCTATTGCCATTTGAATCAAATGGGTTTTAGCTTGTCTATCTTGGGAAGTTTCTTCAAATCGGGTCTTGAACCTGATGTCATTACCTTCAACACTCTCATCCACGGCTTTATTCTTGACAATCAAGTGGCTGAGGCTGCACGCATTTTCACCAAAACGCTGGAGGCAGGTCACTGTAAACCTGATGTGTCCACATTCAACATACTGTTAAAGGGCTTCTGCAAGACGTCGAACAGCAGCAGTGCAGCCATTCAGTTACTTAGGAAGATGGAAGAAGTCGGATGCAAGCCTAACACAATTTCTTATGGCACCATCATCGACAGCCTTTGCAAGGACTTGCTAGTTGACGAAGCTTTGGAGCTCTTTAAAGAAATGATCAGTAGGGGTATTGCTCCAAATGTTGTTACTTACACCTGCTTGATTCAAGGACTTTGTAATGTAGGCCAGTGGCAAGAAGCTACAAGGTTGCTGGATCAAATGTTGAGTAAAGGTGTCTCTCCAGATATCTTCACCTTCAGTGTCTTGGTTGATACACTTTGCAAGCAAGGGATGGTCATCAAAGCTAAAACTGTGGTTCAAATGATGATTCAAAGAGGTATTGAGCCTAATACAGTTACATATAGTTCCCTTATGGACGGTTACTGTATGCTAGGAGAAATGGATAAAGCGAAAGAAGTTTTTGATCTTATGATTAACAAGGGCGGCATGGTTAATGTTCATAGTTGTAGCATATTGATTAACGGATATTGCAAGGCTAAAAAGATTGATCAGGCCACAAAGATTTTCAACGAAATGCATAGTATGGAAATTGTTCCTAATACCATAACTTACACCACTCTTATTGATGGTCTTTGCAAAGCGAGGAGAATGCAAGATGCAGAAAATTTGTTCTCCAAGATGCAAGGTTGTGGCCAGCTTCCGAATGTTCAAACATACGCTGTGTTACTTGATGGCCTGTGTAACGATCAGCGACTTTCTGCGGCAATAGAATTGCTCAAAGAGATGGAAGCCAACAAAGTGGAACTTAATATCGTAGTTTACAATGTTGTTATCGAAGGTTTGTGCAAAGCTGGAAATATCGTTTATGCAAGAGATCTCTTCTCTCACTTATCATCAAAAGGAGTTCAGCCTAATGTCAGAACATACAATATAATGATTCATGGACTTTGTCATCATGGCTTGATAATTGAAGCAGAAAAGTTGCTGAGAGAAATGGGAGAGAAAGGATGTTGTCCAGATGGTTGGACCTATAATACTATCATCCGAGGGTTGTTGAAGAACAATGAGACATCATGGGGTATGGGACTTATTCAAGAAATGGTTGAGTGGGGTTTCCCTGCAGATGTGTTTACTATGGAATTGATAGGTGGTTTATTGTGTAAGGATGTAGTAGATCCGGCTTTCTTGCCGCTCTTAAAAGATTCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

703

Amino Acids

78.36

Weight (kDa)

7.72

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	182 - 230	7.7e-06	PPR repeat family
PPR_3	PF13812	246 - 299	6.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	248 - 277	5.4e-07	PPR repeat
PPR_2	PF13041	251 - 301	1.1e-11	PPR repeat family
PPR_1	PF12854	285 - 317	2e-06	PPR repeat
PPR_3	PF13812	286 - 333	6.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	287 - 337	2.5e-13	PPR repeat family
PPR_long	PF17177	300 - 423	7.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	320 - 351	9e-12	PPR repeat
PPR_2	PF13041	325 - 372	1.9e-16	PPR repeat family
PPR	PF01535	326 - 356	4e-08	PPR repeat
PPR_3	PF13812	347 - 405	4.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	354 - 386	8.5e-12	PPR repeat
PPR_2	PF13041	358 - 407	7.9e-19	PPR repeat family
PPR	PF01535	361 - 391	2.4e-07	PPR repeat
PPR_1	PF12854	389 - 421	1.1e-06	PPR repeat
PPR_2	PF13041	424 - 459	6.7e-08	PPR repeat family
PPR_1	PF12854	442 - 474	4e-07	PPR repeat
PPR_2	PF13041	481 - 529	1.4e-16	PPR repeat family
PPR_3	PF13812	504 - 560	2.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	511 - 543	1.4e-12	PPR repeat
PPR_2	PF13041	519 - 564	3.4e-14	PPR repeat family
PPR	PF01535	519 - 548	1.6e-09	PPR repeat
PPR_2	PF13041	554 - 591	3.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1100
AatII	GACGTC	1 cut(s)	908
Acc36I	ACCTGC	2 cut(s)	836, 1100
AccB1I	GGYRCC	1 cut(s)	986
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccBSI	CCGCTC	2 cut(s)	425, 2089
AccI	GTMKAC	1 cut(s)	397
AciI	CCGC	6 cut(s)	19, 122, 423, 1380, 1658, 2087
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	2 cut(s)	1158, 2066
AcoI	YGGCCR	1 cut(s)	1588
AcsI	RAATTY	2 cut(s)	92, 1561
AcuI	CTGAAG	2 cut(s)	190, 1177
AcyI	GRCGYC	2 cut(s)	279, 905
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	4 cut(s)	217, 358, 359, 1009
AflIII	ACRYGT	2 cut(s)	510, 533
AjiI	CACGTC	1 cut(s)	536
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	8 cut(s)	230, 711, 1031, 1039, 1136, 1241, 1594, 1748
AluI	AGCT	8 cut(s)	230, 711, 1031, 1039, 1136, 1241, 1594, 1748
Alw21I	GWGCWC	1 cut(s)	1041
Alw26I	GTCTC	3 cut(s)	111, 1177, 1958
AlwI	GGATC	2 cut(s)	1158, 2066
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	7 cut(s)	46, 75, 574, 1120, 1449, 1588, 1630
ApeKI	GCWGC	3 cut(s)	815, 915, 923
ApoI	RAATTY	2 cut(s)	92, 1561
Asp700I	GAANNNNTTC	4 cut(s)	158, 512, 525, 1488
AspS9I	GGNCC	3 cut(s)	76, 574, 1923
AsuC2I	CCSGG	2 cut(s)	354, 355
AsuHPI	GGTGA	4 cut(s)	403, 412, 820, 1180
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	1923
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BalI	TGGCCA	1 cut(s)	1590
BanI	GGYRCC	1 cut(s)	986
BanII	GRGCYC	1 cut(s)	1041
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	1041
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	3 cut(s)	802, 927, 935
BccI	CCATC	7 cut(s)	940, 998, 1222, 1517, 1622, 1675, 1910
BceAI	ACGGC	2 cut(s)	90, 799
BcgI	CGANNNNNNTGC	4 cut(s)	976, 1010, 1528, 1562
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	2 cut(s)	1053, 1444
BcnI	CCSGG	2 cut(s)	354, 355
BcoDI	GTCTC	3 cut(s)	111, 1177, 1958
BfaI	CTAG	4 cut(s)	231, 404, 1019, 1328
BfmI	CTRYAG	1 cut(s)	2016
BfuAI	ACCTGC	2 cut(s)	836, 1100
BglII	AGATCT	1 cut(s)	1771
BisI	GCNGC	7 cut(s)	19, 816, 916, 924, 1381, 1659, 2087
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	7 cut(s)	20, 817, 917, 925, 1382, 1660, 2088
Bme1390I	CCNGG	3 cut(s)	107, 354, 355
Bme18I	GGWCC	1 cut(s)	1923
BmeT110I	CYCGRG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	536
BmgT120I	GGNCC	3 cut(s)	76, 574, 1923
BmiI	GGNNCC	1 cut(s)	988
BmrFI	CCNGG	3 cut(s)	107, 354, 355
BmrI	ACTGGG	2 cut(s)	401, 581
BmsI	GCATC	4 cut(s)	289, 950, 1543, 1566
BmuI	ACTGGG	2 cut(s)	401, 581
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	3 cut(s)	279, 860, 1161
Bpu10I	CCTNAGC	1 cut(s)	810
Bpu1102I	GCTNAGC	1 cut(s)	14
BpuMI	CCSGG	2 cut(s)	354, 355
BsaBI	GATNNNNATC	1 cut(s)	1232
BsaHI	GRCGYC	2 cut(s)	279, 905
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	5 cut(s)	105, 352, 353, 781, 1942
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 358, 359, 1009
Bse1I	ACTGG	3 cut(s)	396, 576, 1123
Bse8I	GATNNNNATC	1 cut(s)	1232
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	5 cut(s)	105, 352, 353, 781, 1942
BseGI	GGATG	6 cut(s)	777, 965, 1233, 1910, 1938, 2068
BseJI	GATNNNNATC	1 cut(s)	1232
BseLI	CCNNNNNNNGG	4 cut(s)	217, 358, 359, 1009
BseMII	CTCAG	3 cut(s)	28, 801, 1874
BseNI	ACTGG	3 cut(s)	396, 576, 1123
BseRI	GAGGAG	1 cut(s)	1555
BseXI	GCAGC	3 cut(s)	802, 927, 935
BsgI	GTGCAG	2 cut(s)	801, 942
BshFI	GGCC	7 cut(s)	48, 77, 576, 1122, 1451, 1590, 1632
BshNI	GGYRCC	1 cut(s)	986
BsiHKAI	GWGCWC	1 cut(s)	1041
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	354, 2075
BslFI	GGGAC	1 cut(s)	1995
BslI	CCNNNNNNNGG	4 cut(s)	217, 358, 359, 1009
BsmAI	GTCTC	3 cut(s)	111, 1177, 1958
BsmFI	GGGAC	1 cut(s)	1995
BsmI	GAATGC	1 cut(s)	1551
BsnI	GGCC	7 cut(s)	48, 77, 576, 1122, 1451, 1590, 1632
Bso31I	GGTCTC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	1041
Bsp143I	GATC	7 cut(s)	1053, 1150, 1360, 1444, 1642, 1771, 2071
Bsp1720I	GCTNAGC	1 cut(s)	14
BspACI	CCGC	6 cut(s)	19, 122, 423, 1380, 1658, 2087
BspANI	GGCC	7 cut(s)	48, 77, 576, 1122, 1451, 1590, 1632
BspCNI	CTCAG	3 cut(s)	27, 802, 1875
BspLI	GGNNCC	1 cut(s)	988
BspMAI	CTGCAG	1 cut(s)	2020
BspMI	ACCTGC	2 cut(s)	836, 1100
BspPI	GGATC	2 cut(s)	1158, 2066
BspT107I	GGYRCC	1 cut(s)	986
BspTNI	GGTCTC	1 cut(s)	111
BsrBI	CCGCTC	2 cut(s)	425, 2089
BsrI	ACTGG	3 cut(s)	396, 576, 1123
BssECI	CCNNGG	5 cut(s)	105, 352, 353, 781, 1942
BssMI	GATC	7 cut(s)	1053, 1150, 1360, 1444, 1642, 1771, 2071
BssNI	GRCGYC	2 cut(s)	279, 905
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	8 cut(s)	335, 457, 854, 885, 1249, 1291, 1316, 1322
Bst6I	CTCTTC	1 cut(s)	1781
BstACI	GRCGYC	2 cut(s)	279, 905
BstC8I	GCNNGC	5 cut(s)	202, 820, 965, 1220, 1592
BstDEI	CTNAG	5 cut(s)	14, 564, 810, 938, 1883
BstDSI	CCRYGG	1 cut(s)	781
BstENI	CCTNNNNNAGG	1 cut(s)	1007
BstF5I	GGATG	6 cut(s)	777, 965, 1233, 1910, 1938, 2068
BstKTI	GATC	7 cut(s)	1056, 1153, 1363, 1447, 1645, 1774, 2074
BstMAI	GTCTC	3 cut(s)	111, 1177, 1958
BstMBI	GATC	7 cut(s)	1053, 1150, 1360, 1444, 1642, 1771, 2071
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 187, 227, 299, 815
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	3 cut(s)	181, 350, 514
BstSCI	CCNGG	3 cut(s)	105, 352, 353
BstSFI	CTRYAG	1 cut(s)	2016
BstV1I	GCAGC	3 cut(s)	802, 927, 935
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	2 cut(s)	1771, 2071
BstXI	CCANNNNNNTGG	3 cut(s)	838, 1696, 1920
BstYI	RGATCY	2 cut(s)	1771, 2071
BsuRI	GGCC	7 cut(s)	48, 77, 576, 1122, 1451, 1590, 1632
BtgI	CCRYGG	1 cut(s)	781
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	6 cut(s)	777, 965, 1233, 1910, 1938, 2068
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	4 cut(s)	850, 925, 1130, 1201
BveI	ACCTGC	2 cut(s)	836, 1100
Cac8I	GCNNGC	5 cut(s)	202, 820, 965, 1220, 1592
Cfr13I	GGNCC	3 cut(s)	76, 574, 1923
Cfr9I	CCCGGG	1 cut(s)	353
CseI	GACGC	3 cut(s)	170, 268, 620
Csp6I	GTAC	1 cut(s)	458
CspCI	CAANNNNNGTGG	2 cut(s)	1501, 1536
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	5 cut(s)	14, 564, 810, 938, 1883
DpnI	GATC	7 cut(s)	1055, 1152, 1362, 1446, 1644, 1773, 2073
DpnII	GATC	7 cut(s)	1053, 1150, 1360, 1444, 1642, 1771, 2071
DraI	TTTAAA	3 cut(s)	268, 388, 1045
EaeI	YGGCCR	1 cut(s)	1588
Eam1104I	CTCTTC	1 cut(s)	1781
EarI	CTCTTC	1 cut(s)	1781
Ecl136II	GAGCTC	1 cut(s)	1039
Eco24I	GRGCYC	1 cut(s)	1041
Eco31I	GGTCTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	1183
Eco47I	GGWCC	1 cut(s)	1923
Eco53kI	GAGCTC	1 cut(s)	1039
Eco57I	CTGAAG	2 cut(s)	190, 1177
Eco88I	CYCGRG	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	1039
EcoNI	CCTNNNNNAGG	1 cut(s)	1007
EcoRII	CCWGG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	1183
EcoT22I	ATGCAT	1 cut(s)	1476
EcoT38I	GRGCYC	1 cut(s)	1041
FalI	AAGNNNNNCTT	4 cut(s)	584, 616, 1686, 1718
FaqI	GGGAC	1 cut(s)	1995
FauI	CCCGC	1 cut(s)	129
FbaI	TGATCA	2 cut(s)	1053, 1444
FblI	GTMKAC	1 cut(s)	397
Fnu4HI	GCNGC	7 cut(s)	19, 816, 916, 924, 1381, 1659, 2087
FokI	GGATG	6 cut(s)	764, 972, 1240, 1917, 1925, 2075
FriOI	GRGCYC	1 cut(s)	1041
Fsp4HI	GCNGC	7 cut(s)	19, 816, 916, 924, 1381, 1659, 2087
FspBI	CTAG	4 cut(s)	231, 404, 1019, 1328
GluI	GCNGC	7 cut(s)	19, 816, 916, 924, 1381, 1659, 2087
GsuI	CTGGAG	3 cut(s)	279, 860, 1161
HaeIII	GGCC	7 cut(s)	48, 77, 576, 1122, 1451, 1590, 1632
HapII	CCGG	2 cut(s)	354, 2075
HgaI	GACGC	3 cut(s)	170, 268, 620
Hin1I	GRCGYC	2 cut(s)	279, 905
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	1029
HinfI	GANTC	5 cut(s)	694, 1099, 1264, 1834, 2099
HpaII	CCGG	2 cut(s)	354, 2075
HphI	GGTGA	4 cut(s)	403, 412, 820, 1180
Hpy166II	GTNNAC	8 cut(s)	365, 398, 460, 857, 870, 1024, 1717, 2028
Hpy188I	TCNGA	4 cut(s)	959, 1599, 1817, 1943
Hpy188III	TCNNGA	7 cut(s)	296, 494, 746, 794, 1178, 1913, 1991
Hpy8I	GTNNAC	8 cut(s)	365, 398, 460, 857, 870, 1024, 1717, 2028
Hpy99I	CGWCG	1 cut(s)	910
HpyAV	CCTTC	7 cut(s)	59, 63, 427, 555, 775, 1201, 1727
HpyCH4III	ACNGT	8 cut(s)	335, 457, 854, 885, 1249, 1291, 1316, 1322
HpyCH4IV	ACGT	3 cut(s)	315, 535, 905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 187, 227, 299, 815
HpyF3I	CTNAG	5 cut(s)	14, 564, 810, 938, 1883
HpySE526I	ACGT	3 cut(s)	315, 535, 905
Hsp92I	GRCGYC	2 cut(s)	279, 905
Ksp22I	TGATCA	2 cut(s)	1053, 1444
Kzo9I	GATC	7 cut(s)	1053, 1150, 1360, 1444, 1642, 1771, 2071
LmnI	GCTCC	6 cut(s)	142, 238, 298, 649, 1036, 1075
Lsp1109I	GCAGC	3 cut(s)	802, 927, 935
LweI	GCATC	4 cut(s)	289, 950, 1543, 1566
MaeI	CTAG	4 cut(s)	231, 404, 1019, 1328
MaeII	ACGT	3 cut(s)	315, 535, 905
MaeIII	GTNAC	8 cut(s)	319, 848, 933, 1081, 1291, 1316, 1620, 1637
MalI	GATC	7 cut(s)	1055, 1152, 1362, 1446, 1644, 1773, 2073
MbiI	CCGCTC	2 cut(s)	425, 2089
MboI	GATC	7 cut(s)	1053, 1150, 1360, 1444, 1642, 1771, 2071
MflI	RGATCY	2 cut(s)	1771, 2071
MhlI	GDGCHC	1 cut(s)	1041
MlsI	TGGCCA	1 cut(s)	1590
MluNI	TGGCCA	1 cut(s)	1590
MmeI	TCCRAC	2 cut(s)	937, 1901
Mox20I	TGGCCA	1 cut(s)	1590
Mph1103I	ATGCAT	1 cut(s)	1476
MroXI	GAANNNNTTC	4 cut(s)	158, 512, 525, 1488
MscI	TGGCCA	1 cut(s)	1590
MseI	TTAA	9 cut(s)	267, 387, 887, 1044, 1371, 1389, 1416, 1704, 2093
Msp20I	TGGCCA	1 cut(s)	1590
MspI	CCGG	2 cut(s)	354, 2075
MspR9I	CCNGG	3 cut(s)	107, 354, 355
Mva1269I	GAATGC	1 cut(s)	1551
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	5 cut(s)	178, 187, 227, 299, 815
NciI	CCSGG	2 cut(s)	354, 355
NdeII	GATC	7 cut(s)	1053, 1150, 1360, 1444, 1642, 1771, 2071
NlaIV	GGNNCC	1 cut(s)	988
NmuCI	GTSAC	2 cut(s)	319, 848
NsiI	ATGCAT	1 cut(s)	1476
NspI	RCATGY	3 cut(s)	181, 350, 514
PaqCI	CACCTGC	1 cut(s)	1100
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	1551
PdmI	GAANNNNTTC	4 cut(s)	158, 512, 525, 1488
PfeI	GAWTC	5 cut(s)	694, 1099, 1264, 1834, 2099
PflFI	GACNNNGTC	1 cut(s)	1845
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	7 cut(s)	20, 817, 917, 925, 1382, 1660, 2088
PscI	ACATGT	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	1041
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	988
PspPI	GGNCC	3 cut(s)	76, 574, 1923
PstI	CTGCAG	1 cut(s)	2020
PsuI	RGATCY	2 cut(s)	1771, 2071
PsyI	GACNNNGTC	1 cut(s)	1845
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	1041
SaqAI	TTAA	9 cut(s)	267, 387, 887, 1044, 1371, 1389, 1416, 1704, 2093
SatI	GCNGC	7 cut(s)	19, 816, 916, 924, 1381, 1659, 2087
Sau3AI	GATC	7 cut(s)	1053, 1150, 1360, 1444, 1642, 1771, 2071
Sau96I	GGNCC	3 cut(s)	76, 574, 1923
ScrFI	CCNGG	3 cut(s)	107, 354, 355
SduI	GDGCHC	1 cut(s)	1041
SfaNI	GCATC	4 cut(s)	289, 950, 1543, 1566
SfcI	CTRYAG	1 cut(s)	2016
SinI	GGWCC	1 cut(s)	1923
SmaI	CCCGGG	1 cut(s)	355
SsiI	CCGC	6 cut(s)	19, 122, 423, 1380, 1658, 2087
SspMI	CTAG	4 cut(s)	231, 404, 1019, 1328
SstI	GAGCTC	1 cut(s)	1041
StyD4I	CCNGG	3 cut(s)	105, 352, 353
TaaI	ACNGT	8 cut(s)	335, 457, 854, 885, 1249, 1291, 1316, 1322
TaiI	ACGT	3 cut(s)	318, 538, 908
TaqI	TCGA	5 cut(s)	162, 223, 908, 996, 1731
TauI	GCSGC	4 cut(s)	21, 1383, 1661, 2089
TfiI	GAWTC	5 cut(s)	694, 1099, 1264, 1834, 2099
Tru1I	TTAA	9 cut(s)	267, 387, 887, 1044, 1371, 1389, 1416, 1704, 2093
Tru9I	TTAA	9 cut(s)	267, 387, 887, 1044, 1371, 1389, 1416, 1704, 2093
TscAI	CASTG	4 cut(s)	857, 925, 1130, 1201
TseFI	GTSAC	2 cut(s)	319, 848
TseI	GCWGC	3 cut(s)	815, 915, 923
Tsp45I	GTSAC	2 cut(s)	319, 848
TspDTI	ATGAA	5 cut(s)	74, 534, 1385, 1826, 2091
TspGWI	ACGGA	1 cut(s)	1434
TspMI	CCCGGG	1 cut(s)	353
TspRI	CASTG	4 cut(s)	857, 925, 1130, 1201
Tth111I	GACNNNGTC	1 cut(s)	1845
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	1923
XagI	CCTNNNNNAGG	1 cut(s)	1007
XapI	RAATTY	2 cut(s)	92, 1561
XceI	RCATGY	3 cut(s)	181, 350, 514
XmaI	CCCGGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	397
XmnI	GAANNNNTTC	4 cut(s)	158, 512, 525, 1488
XspI	CTAG	4 cut(s)	231, 404, 1019, 1328
ZraI	GACGTC	1 cut(s)	906
Zsp2I	ATGCAT	1 cut(s)	1476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.