Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 18 - 50 | 2.7e-12 | PPR repeat |
| PPR_2 | PF13041 | 22 - 71 | 1.7e-17 | PPR repeat family |
| PPR | PF01535 | 25 - 55 | 1.1e-07 | PPR repeat |
| PPR_1 | PF12854 | 53 - 85 | 8.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 85 - 118 | 9.7e-07 | PPR repeat family |
| TPR_24 | PF23276 | 91 - 202 | 3.4e-09 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 93 - 136 | 2.4e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 101 - 133 | 6.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 105 - 154 | 2.1e-11 | PPR repeat family |
| PPR | PF01535 | 108 - 137 | 4.9e-07 | PPR repeat |
| PPR_2 | PF13041 | 141 - 188 | 6.7e-14 | PPR repeat family |
| PPR | PF01535 | 147 - 173 | 8.8e-06 | PPR repeat |
| PPR_long | PF17177 | 157 - 281 | 5.7e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 164 - 222 | 3.8e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 171 - 204 | 2.5e-11 | PPR repeat |
| PPR_2 | PF13041 | 175 - 223 | 5.2e-16 | PPR repeat family |
| PPR | PF01535 | 178 - 207 | 9.1e-08 | PPR repeat |
| TPR_24 | PF23276 | 178 - 271 | 1.1e-07 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 207 - 239 | 7e-07 | PPR repeat |
| PPR_3 | PF13812 | 234 - 290 | 4.8e-09 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 246 - 294 | 5.7e-11 | PPR repeat family |
| PPR_1 | PF12854 | 278 - 309 | 6.4e-11 | PPR repeat |
| PPR_3 | PF13812 | 278 - 325 | 3.1e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 280 - 327 | 2.3e-14 | PPR repeat family |
| PPR | PF01535 | 285 - 313 | 1.3e-08 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 540 |
| AarI | CACCTGC | 1 cut(s) | 210 |
| Acc36I | ACCTGC | 1 cut(s) | 210 |
| AciI | CCGC | 1 cut(s) | 266 |
| AclWI | GGATC | 1 cut(s) | 1100 |
| AcoI | YGGCCR | 1 cut(s) | 619 |
| AcsI | RAATTY | 1 cut(s) | 1132 |
| AfaI | GTAC | 2 cut(s) | 744, 955 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 512 |
| AhlI | ACTAGT | 1 cut(s) | 115 |
| AluBI | AGCT | 3 cut(s) | 23, 272, 998 |
| AluI | AGCT | 3 cut(s) | 23, 272, 998 |
| Alw26I | GTCTC | 1 cut(s) | 568 |
| AlwI | GGATC | 1 cut(s) | 1100 |
| AoxI | GGCC | 2 cut(s) | 619, 886 |
| ApeKI | GCWGC | 2 cut(s) | 20, 998 |
| ApoI | RAATTY | 1 cut(s) | 1132 |
| AseI | ATTAAT | 1 cut(s) | 987 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 137 |
| AsuC2I | CCSGG | 1 cut(s) | 781 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 102, 135 |
| BalI | TGGCCA | 1 cut(s) | 621 |
| BanII | GRGCYC | 1 cut(s) | 413 |
| BbvI | GCAGC | 2 cut(s) | 32, 985 |
| BccI | CCATC | 5 cut(s) | 37, 95, 253, 548, 941 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcnI | CCSGG | 1 cut(s) | 781 |
| BcoDI | GTCTC | 1 cut(s) | 568 |
| BcuI | ACTAGT | 1 cut(s) | 115 |
| BfaI | CTAG | 1 cut(s) | 116 |
| BfmI | CTRYAG | 1 cut(s) | 1050 |
| BfuAI | ACCTGC | 1 cut(s) | 210 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BisI | GCNGC | 2 cut(s) | 21, 999 |
| BlsI | GCNGC | 2 cut(s) | 22, 1000 |
| Bme1390I | CCNGG | 1 cut(s) | 781 |
| BmiI | GGNNCC | 1 cut(s) | 412 |
| BmrFI | CCNGG | 1 cut(s) | 781 |
| BmsI | GCATC | 6 cut(s) | 47, 597, 649, 1010, 1045, 1067 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 794, 826 |
| BpmI | CTGGAG | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BpuMI | CCSGG | 1 cut(s) | 781 |
| Bsa29I | ATCGAT | 1 cut(s) | 474 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 512 |
| Bse1I | ACTGG | 1 cut(s) | 738 |
| BseCI | ATCGAT | 1 cut(s) | 474 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 3 cut(s) | 62, 264, 625 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 512 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseNI | ACTGG | 1 cut(s) | 738 |
| BseRI | GAGGAG | 2 cut(s) | 375, 586 |
| BseXI | GCAGC | 2 cut(s) | 32, 985 |
| BsgI | GTGCAG | 1 cut(s) | 39 |
| BshFI | GGCC | 2 cut(s) | 621, 888 |
| BshVI | ATCGAT | 1 cut(s) | 474 |
| BsiSI | CCGG | 1 cut(s) | 780 |
| BslFI | GGGAC | 3 cut(s) | 528, 885, 1029 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 512 |
| BsmAI | GTCTC | 1 cut(s) | 568 |
| BsmFI | GGGAC | 3 cut(s) | 528, 885, 1029 |
| BsnI | GGCC | 2 cut(s) | 621, 888 |
| Bsp1286I | GDGCHC | 1 cut(s) | 413 |
| Bsp143I | GATC | 3 cut(s) | 391, 471, 1105 |
| Bsp19I | CCATGG | 1 cut(s) | 414 |
| BspACI | CCGC | 1 cut(s) | 266 |
| BspANI | GGCC | 2 cut(s) | 621, 888 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| BspDI | ATCGAT | 1 cut(s) | 474 |
| BspHI | TCATGA | 1 cut(s) | 1136 |
| BspLI | GGNNCC | 1 cut(s) | 412 |
| BspMAI | CTGCAG | 1 cut(s) | 1054 |
| BspMI | ACCTGC | 1 cut(s) | 210 |
| BspPI | GGATC | 1 cut(s) | 1100 |
| BsrI | ACTGG | 1 cut(s) | 738 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 3 cut(s) | 391, 471, 1105 |
| BssT1I | CCWWGG | 1 cut(s) | 414 |
| Bst4CI | ACNGT | 7 cut(s) | 17, 98, 250, 347, 353, 829, 884 |
| Bst6I | CTCTTC | 2 cut(s) | 143, 513 |
| BstC8I | GCNNGC | 1 cut(s) | 62 |
| BstDEI | CTNAG | 3 cut(s) | 142, 704, 892 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstF5I | GGATG | 3 cut(s) | 62, 264, 625 |
| BstKTI | GATC | 3 cut(s) | 394, 474, 1108 |
| BstMAI | GTCTC | 1 cut(s) | 568 |
| BstMBI | GATC | 3 cut(s) | 391, 471, 1105 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 216, 1007 |
| BstSCI | CCNGG | 1 cut(s) | 779 |
| BstSFI | CTRYAG | 1 cut(s) | 1050 |
| BstV1I | GCAGC | 2 cut(s) | 32, 985 |
| BstX2I | RGATCY | 1 cut(s) | 1105 |
| BstYI | RGATCY | 1 cut(s) | 1105 |
| Bsu15I | ATCGAT | 1 cut(s) | 474 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 2 cut(s) | 621, 888 |
| BsuTUI | ATCGAT | 1 cut(s) | 474 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtsCI | GGATG | 3 cut(s) | 62, 264, 625 |
| BtsIMutI | CAGTG | 1 cut(s) | 22 |
| BveI | ACCTGC | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 1 cut(s) | 62 |
| CciI | TCATGA | 1 cut(s) | 1136 |
| ClaI | ATCGAT | 1 cut(s) | 474 |
| Csp6I | GTAC | 2 cut(s) | 743, 954 |
| CviAII | CATG | 3 cut(s) | 319, 415, 1137 |
| CviQI | GTAC | 2 cut(s) | 743, 954 |
| DdeI | CTNAG | 3 cut(s) | 142, 704, 892 |
| DpnI | GATC | 3 cut(s) | 393, 473, 1107 |
| DpnII | GATC | 3 cut(s) | 391, 471, 1105 |
| EaeI | YGGCCR | 1 cut(s) | 619 |
| Eam1104I | CTCTTC | 2 cut(s) | 143, 513 |
| EarI | CTCTTC | 2 cut(s) | 143, 513 |
| Eco130I | CCWWGG | 1 cut(s) | 414 |
| Eco24I | GRGCYC | 1 cut(s) | 413 |
| EcoT14I | CCWWGG | 1 cut(s) | 414 |
| EcoT22I | ATGCAT | 1 cut(s) | 1060 |
| EcoT38I | GRGCYC | 1 cut(s) | 413 |
| ErhI | CCWWGG | 1 cut(s) | 414 |
| FaeI | CATG | 3 cut(s) | 322, 418, 1140 |
| FaqI | GGGAC | 3 cut(s) | 528, 885, 1029 |
| FatI | CATG | 3 cut(s) | 318, 414, 1136 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 999 |
| FokI | GGATG | 3 cut(s) | 69, 271, 612 |
| FriOI | GRGCYC | 1 cut(s) | 413 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 999 |
| FspBI | CTAG | 1 cut(s) | 116 |
| GluI | GCNGC | 2 cut(s) | 21, 999 |
| GsuI | CTGGAG | 1 cut(s) | 153 |
| HaeIII | GGCC | 2 cut(s) | 621, 888 |
| HapII | CCGG | 1 cut(s) | 780 |
| Hin1II | CATG | 3 cut(s) | 322, 418, 1140 |
| HincII | GTYRAC | 1 cut(s) | 246 |
| HindII | GTYRAC | 1 cut(s) | 246 |
| HinfI | GANTC | 3 cut(s) | 196, 295, 791 |
| HpaII | CCGG | 1 cut(s) | 780 |
| Hpy166II | GTNNAC | 1 cut(s) | 246 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 429, 604 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 524, 1036, 1137 |
| Hpy8I | GTNNAC | 1 cut(s) | 246 |
| HpyAV | CCTTC | 1 cut(s) | 709 |
| HpyCH4III | ACNGT | 7 cut(s) | 17, 98, 250, 347, 353, 829, 884 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 216, 1007 |
| HpyF3I | CTNAG | 3 cut(s) | 142, 704, 892 |
| Hsp92II | CATG | 3 cut(s) | 322, 418, 1140 |
| Kzo9I | GATC | 3 cut(s) | 391, 471, 1105 |
| LmnI | GCTCC | 2 cut(s) | 172, 416 |
| LpnPI | CCDG | 8 cut(s) | 169, 183, 205, 537, 689, 719, 793, 798 |
| Lsp1109I | GCAGC | 2 cut(s) | 32, 985 |
| LweI | GCATC | 6 cut(s) | 47, 597, 649, 1010, 1045, 1067 |
| MaeI | CTAG | 1 cut(s) | 116 |
| MaeIII | GTNAC | 5 cut(s) | 178, 347, 434, 532, 878 |
| MalI | GATC | 3 cut(s) | 393, 473, 1107 |
| MboI | GATC | 3 cut(s) | 391, 471, 1105 |
| MboII | GAAGA | 4 cut(s) | 52, 59, 130, 500 |
| MflI | RGATCY | 1 cut(s) | 1105 |
| MhlI | GDGCHC | 1 cut(s) | 413 |
| MlsI | TGGCCA | 1 cut(s) | 621 |
| MluCI | AATT | 8 cut(s) | 29, 306, 698, 786, 966, 1070, 1081, 1132 |
| MluNI | TGGCCA | 1 cut(s) | 621 |
| MlyI | GAGTC | 1 cut(s) | 304 |
| MmeI | TCCRAC | 1 cut(s) | 708 |
| Mox20I | TGGCCA | 1 cut(s) | 621 |
| Mph1103I | ATGCAT | 1 cut(s) | 1060 |
| MroXI | GAANNNNTTC | 1 cut(s) | 137 |
| MscI | TGGCCA | 1 cut(s) | 621 |
| MseI | TTAA | 5 cut(s) | 447, 762, 867, 987, 1080 |
| Msp20I | TGGCCA | 1 cut(s) | 621 |
| MspI | CCGG | 1 cut(s) | 780 |
| MspR9I | CCNGG | 1 cut(s) | 781 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 216, 1007 |
| NciI | CCSGG | 1 cut(s) | 781 |
| NcoI | CCATGG | 1 cut(s) | 414 |
| NdeII | GATC | 3 cut(s) | 391, 471, 1105 |
| NlaIII | CATG | 3 cut(s) | 322, 418, 1140 |
| NlaIV | GGNNCC | 1 cut(s) | 412 |
| NmuCI | GTSAC | 1 cut(s) | 434 |
| NsiI | ATGCAT | 1 cut(s) | 1060 |
| PagI | TCATGA | 1 cut(s) | 1136 |
| PaqCI | CACCTGC | 1 cut(s) | 210 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1032 |
| PdmI | GAANNNNTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 2 cut(s) | 196, 791 |
| PkrI | GCNGC | 2 cut(s) | 22, 1000 |
| PleI | GAGTC | 1 cut(s) | 303 |
| PpsI | GAGTC | 1 cut(s) | 303 |
| PshBI | ATTAAT | 1 cut(s) | 987 |
| PsiI | TTATAA | 1 cut(s) | 540 |
| PspN4I | GGNNCC | 1 cut(s) | 412 |
| PstI | CTGCAG | 1 cut(s) | 1054 |
| PsuI | RGATCY | 1 cut(s) | 1105 |
| RsaI | GTAC | 2 cut(s) | 744, 955 |
| RsaNI | GTAC | 2 cut(s) | 743, 954 |
| SaqAI | TTAA | 5 cut(s) | 447, 762, 867, 987, 1080 |
| SatI | GCNGC | 2 cut(s) | 21, 999 |
| Sau3AI | GATC | 3 cut(s) | 391, 471, 1105 |
| SchI | GAGTC | 1 cut(s) | 304 |
| ScrFI | CCNGG | 1 cut(s) | 781 |
| SduI | GDGCHC | 1 cut(s) | 413 |
| SfaNI | GCATC | 6 cut(s) | 47, 597, 649, 1010, 1045, 1067 |
| SfcI | CTRYAG | 1 cut(s) | 1050 |
| SmlI | CTYRAG | 1 cut(s) | 35 |
| SmoI | CTYRAG | 1 cut(s) | 35 |
| SpeI | ACTAGT | 1 cut(s) | 115 |
| Sse9I | AATT | 8 cut(s) | 29, 306, 698, 786, 966, 1070, 1081, 1132 |
| SsiI | CCGC | 1 cut(s) | 266 |
| SspI | AATATT | 2 cut(s) | 490, 634 |
| SspMI | CTAG | 1 cut(s) | 116 |
| StyD4I | CCNGG | 1 cut(s) | 779 |
| StyI | CCWWGG | 1 cut(s) | 414 |
| TaaI | ACNGT | 7 cut(s) | 17, 98, 250, 347, 353, 829, 884 |
| TaqI | TCGA | 3 cut(s) | 93, 474, 1035 |
| TasI | AATT | 8 cut(s) | 29, 306, 698, 786, 966, 1070, 1081, 1132 |
| TatI | WGTACW | 1 cut(s) | 742 |
| TfiI | GAWTC | 2 cut(s) | 196, 791 |
| Tru1I | TTAA | 5 cut(s) | 447, 762, 867, 987, 1080 |
| Tru9I | TTAA | 5 cut(s) | 447, 762, 867, 987, 1080 |
| TscAI | CASTG | 1 cut(s) | 22 |
| TseFI | GTSAC | 1 cut(s) | 434 |
| TseI | GCWGC | 2 cut(s) | 20, 998 |
| Tsp45I | GTSAC | 1 cut(s) | 434 |
| TspDTI | ATGAA | 5 cut(s) | 138, 383, 728, 1008, 1125 |
| TspGWI | ACGGA | 1 cut(s) | 465 |
| TspRI | CASTG | 1 cut(s) | 22 |
| VspI | ATTAAT | 1 cut(s) | 987 |
| XapI | RAATTY | 1 cut(s) | 1132 |
| XmnI | GAANNNNTTC | 1 cut(s) | 137 |
| XspI | CTAG | 1 cut(s) | 116 |
| Zsp2I | ATGCAT | 1 cut(s) | 1060 |