Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 37 | 2e-12 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1.5e-20 | PPR repeat family |
| PPR_3 | PF13812 | 8 - 52 | 2.3e-06 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 10 - 104 | 1.1e-09 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 11 - 40 | 6.2e-09 | PPR repeat |
| PPR_1 | PF12854 | 40 - 72 | 1.5e-12 | PPR repeat |
| PPR | PF01535 | 47 - 74 | 8.9e-07 | PPR repeat |
| PPR_3 | PF13812 | 67 - 126 | 1.2e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 76 - 103 | 1.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 6.9e-17 | PPR repeat family |
| PPR | PF01535 | 81 - 105 | 3.3e-06 | PPR repeat |
| PPR_1 | PF12854 | 109 - 142 | 2.6e-11 | PPR repeat |
| PPR_3 | PF13812 | 111 - 158 | 8.7e-09 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 117 - 161 | 6.3e-16 | PPR repeat family |
| PPR | PF01535 | 117 - 146 | 3.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 148 - 193 | 5.1e-07 | PPR repeat family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 39, 144 |
| AclWI | GGATC | 1 cut(s) | 596 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AcuI | CTGAAG | 1 cut(s) | 423 |
| AfaI | GTAC | 1 cut(s) | 454 |
| AgsI | TTSAA | 3 cut(s) | 263, 335, 521 |
| AjnI | CCWGG | 1 cut(s) | 617 |
| AluBI | AGCT | 4 cut(s) | 16, 191, 278, 401 |
| AluI | AGCT | 4 cut(s) | 16, 191, 278, 401 |
| Alw26I | GTCTC | 1 cut(s) | 488 |
| AlwI | GGATC | 1 cut(s) | 596 |
| AoxI | GGCC | 3 cut(s) | 118, 160, 385 |
| AsuHPI | GGTGA | 1 cut(s) | 407 |
| AsuII | TTCGAA | 1 cut(s) | 136 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| BccI | CCATC | 3 cut(s) | 47, 152, 440 |
| BciT130I | CCWGG | 1 cut(s) | 619 |
| BciVI | GTATCC | 1 cut(s) | 586 |
| BcoDI | GTCTC | 1 cut(s) | 488 |
| BfaI | CTAG | 2 cut(s) | 194, 233 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| BfuI | GTATCC | 1 cut(s) | 586 |
| BglII | AGATCT | 1 cut(s) | 301 |
| Bme1390I | CCNGG | 1 cut(s) | 619 |
| BmrFI | CCNGG | 1 cut(s) | 619 |
| BmsI | GCATC | 4 cut(s) | 73, 337, 541, 563 |
| BpmI | CTGGAG | 1 cut(s) | 426 |
| Bpu14I | TTCGAA | 1 cut(s) | 136 |
| BsaJI | CCNNGG | 1 cut(s) | 472 |
| BseBI | CCWGG | 1 cut(s) | 619 |
| BseDI | CCNNGG | 1 cut(s) | 472 |
| BseYI | CCCAGC | 1 cut(s) | 278 |
| BsgI | GTGCAG | 1 cut(s) | 548 |
| BshFI | GGCC | 3 cut(s) | 120, 162, 387 |
| BslFI | GGGAC | 1 cut(s) | 525 |
| BsmAI | GTCTC | 1 cut(s) | 488 |
| BsmFI | GGGAC | 1 cut(s) | 525 |
| BsnI | GGCC | 3 cut(s) | 120, 162, 387 |
| Bsp119I | TTCGAA | 1 cut(s) | 136 |
| Bsp143I | GATC | 2 cut(s) | 301, 601 |
| BspANI | GGCC | 3 cut(s) | 120, 162, 387 |
| BspMAI | CTGCAG | 1 cut(s) | 550 |
| BspPI | GGATC | 1 cut(s) | 596 |
| BspT104I | TTCGAA | 1 cut(s) | 136 |
| BssECI | CCNNGG | 1 cut(s) | 472 |
| BssMI | GATC | 2 cut(s) | 301, 601 |
| Bst2UI | CCWGG | 1 cut(s) | 619 |
| Bst4CI | ACNGT | 3 cut(s) | 31, 183, 598 |
| Bst6I | CTCTTC | 1 cut(s) | 311 |
| BstBI | TTCGAA | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 1 cut(s) | 70 |
| BstDEI | CTNAG | 1 cut(s) | 203 |
| BstKTI | GATC | 2 cut(s) | 304, 604 |
| BstMAI | GTCTC | 1 cut(s) | 488 |
| BstMBI | GATC | 2 cut(s) | 301, 601 |
| BstNI | CCWGG | 1 cut(s) | 619 |
| BstSCI | CCNGG | 1 cut(s) | 617 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstX2I | RGATCY | 2 cut(s) | 301, 601 |
| BstYI | RGATCY | 2 cut(s) | 301, 601 |
| BsuI | GTATCC | 1 cut(s) | 586 |
| BsuRI | GGCC | 3 cut(s) | 120, 162, 387 |
| Cac8I | GCNNGC | 1 cut(s) | 70 |
| Csp6I | GTAC | 1 cut(s) | 453 |
| CviQI | GTAC | 1 cut(s) | 453 |
| DdeI | CTNAG | 1 cut(s) | 203 |
| DpnI | GATC | 2 cut(s) | 303, 603 |
| DpnII | GATC | 2 cut(s) | 301, 601 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 1 cut(s) | 311 |
| EarI | CTCTTC | 1 cut(s) | 311 |
| Eco147I | AGGCCT | 1 cut(s) | 387 |
| Eco57I | CTGAAG | 1 cut(s) | 423 |
| EcoRII | CCWGG | 1 cut(s) | 617 |
| EcoT22I | ATGCAT | 1 cut(s) | 556 |
| FaiI | YATR | 6 cut(s) | 39, 107, 144, 354, 359, 459 |
| FaqI | GGGAC | 1 cut(s) | 525 |
| FspBI | CTAG | 2 cut(s) | 194, 233 |
| GsaI | CCCAGC | 1 cut(s) | 282 |
| GsuI | CTGGAG | 1 cut(s) | 426 |
| HaeIII | GGCC | 3 cut(s) | 120, 162, 387 |
| HinfI | GANTC | 3 cut(s) | 290, 364, 629 |
| HphI | GGTGA | 1 cut(s) | 407 |
| Hpy166II | GTNNAC | 2 cut(s) | 247, 414 |
| Hpy188I | TCNGA | 3 cut(s) | 103, 473, 638 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 194, 443, 521 |
| Hpy8I | GTNNAC | 2 cut(s) | 247, 414 |
| HpyAV | CCTTC | 4 cut(s) | 209, 257, 418, 583 |
| HpyCH4III | ACNGT | 3 cut(s) | 31, 183, 598 |
| HpyCH4IV | ACGT | 1 cut(s) | 350 |
| HpyCH4V | TGCA | 7 cut(s) | 86, 109, 273, 296, 548, 554, 565 |
| HpyF3I | CTNAG | 1 cut(s) | 203 |
| HpySE526I | ACGT | 1 cut(s) | 350 |
| Kzo9I | GATC | 2 cut(s) | 301, 601 |
| LmnI | GCTCC | 1 cut(s) | 13 |
| LpnPI | CCDG | 9 cut(s) | 36, 54, 176, 264, 297, 456, 604, 618, 631 |
| LweI | GCATC | 4 cut(s) | 73, 337, 541, 563 |
| MaeI | CTAG | 2 cut(s) | 194, 233 |
| MaeII | ACGT | 1 cut(s) | 350 |
| MaeIII | GTNAC | 2 cut(s) | 31, 167 |
| MalI | GATC | 2 cut(s) | 303, 603 |
| MboI | GATC | 2 cut(s) | 301, 601 |
| MboII | GAAGA | 3 cut(s) | 298, 323, 416 |
| MflI | RGATCY | 2 cut(s) | 301, 601 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluCI | AATT | 3 cut(s) | 197, 407, 465 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MmeI | TCCRAC | 1 cut(s) | 207 |
| MnlI | CCTC | 4 cut(s) | 135, 339, 377, 467 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| Mph1103I | ATGCAT | 1 cut(s) | 556 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 1 cut(s) | 624 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| MspR9I | CCNGG | 1 cut(s) | 619 |
| MvaI | CCWGG | 1 cut(s) | 619 |
| NdeII | GATC | 2 cut(s) | 301, 601 |
| NsiI | ATGCAT | 1 cut(s) | 556 |
| NspV | TTCGAA | 1 cut(s) | 136 |
| PceI | AGGCCT | 1 cut(s) | 387 |
| PfeI | GAWTC | 3 cut(s) | 290, 364, 629 |
| PsiI | TTATAA | 2 cut(s) | 39, 144 |
| Psp6I | CCWGG | 1 cut(s) | 617 |
| PspFI | CCCAGC | 1 cut(s) | 278 |
| PspGI | CCWGG | 1 cut(s) | 617 |
| PstI | CTGCAG | 1 cut(s) | 550 |
| PsuI | RGATCY | 2 cut(s) | 301, 601 |
| RsaI | GTAC | 1 cut(s) | 454 |
| RsaNI | GTAC | 1 cut(s) | 453 |
| SaqAI | TTAA | 1 cut(s) | 624 |
| Sau3AI | GATC | 2 cut(s) | 301, 601 |
| ScrFI | CCNGG | 1 cut(s) | 619 |
| SfaNI | GCATC | 4 cut(s) | 73, 337, 541, 563 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SfuI | TTCGAA | 1 cut(s) | 136 |
| Sse9I | AATT | 3 cut(s) | 197, 407, 465 |
| SseBI | AGGCCT | 1 cut(s) | 387 |
| SspI | AATATT | 1 cut(s) | 148 |
| SspMI | CTAG | 2 cut(s) | 194, 233 |
| StuI | AGGCCT | 1 cut(s) | 387 |
| StyD4I | CCNGG | 1 cut(s) | 617 |
| TaaI | ACNGT | 3 cut(s) | 31, 183, 598 |
| TaiI | ACGT | 1 cut(s) | 353 |
| TaqI | TCGA | 2 cut(s) | 136, 587 |
| TasI | AATT | 3 cut(s) | 197, 407, 465 |
| TfiI | GAWTC | 3 cut(s) | 290, 364, 629 |
| Tru1I | TTAA | 1 cut(s) | 624 |
| Tru9I | TTAA | 1 cut(s) | 624 |
| TspDTI | ATGAA | 1 cut(s) | 437 |
| XbaI | TCTAGA | 1 cut(s) | 193 |
| XspI | CTAG | 2 cut(s) | 194, 233 |
| Zsp2I | ATGCAT | 1 cut(s) | 556 |