Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 52 | 1e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 5 - 36 | 2.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 1.4e-13 | PPR repeat family |
| TPR_24 | PF23276 | 11 - 106 | 1.1e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 39 - 72 | 1.8e-11 | PPR repeat |
| PPR | PF01535 | 46 - 75 | 5.3e-07 | PPR repeat |
| PPR_2 | PF13041 | 50 - 91 | 2.9e-09 | PPR repeat family |
| TPR_24 | PF23276 | 59 - 175 | 8.7e-09 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 67 - 124 | 5.5e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 78 - 106 | 3.4e-06 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 4.4e-18 | PPR repeat family |
| PPR | PF01535 | 82 - 111 | 4.2e-07 | PPR repeat |
| PPR_long | PF17177 | 94 - 183 | 3.5e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 109 - 142 | 1.1e-17 | PPR repeat |
| PPR_2 | PF13041 | 113 - 162 | 3.2e-21 | PPR repeat family |
| PPR | PF01535 | 116 - 145 | 1.6e-11 | PPR repeat |
| PPR_1 | PF12854 | 145 - 177 | 8.7e-11 | PPR repeat |
| PPR_2 | PF13041 | 148 - 184 | 1.5e-09 | PPR repeat family |
| PPR | PF01535 | 152 - 179 | 3.7e-06 | PPR repeat |
| PPR_2 | PF13041 | 186 - 223 | 2.3e-08 | PPR repeat family |
| PPR_2 | PF13041 | 213 - 257 | 1e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 459 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 554 |
| AccI | GTMKAC | 1 cut(s) | 786 |
| AciI | CCGC | 1 cut(s) | 836 |
| AclWI | GGATC | 1 cut(s) | 293 |
| AcoI | YGGCCR | 2 cut(s) | 3, 433 |
| AcuI | CTGAAG | 1 cut(s) | 22 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 326, 554 |
| AgsI | TTSAA | 7 cut(s) | 113, 125, 310, 512, 544, 584, 707 |
| AjnI | CCWGG | 1 cut(s) | 45 |
| AluBI | AGCT | 3 cut(s) | 246, 383, 851 |
| AluI | AGCT | 3 cut(s) | 246, 383, 851 |
| Alw26I | GTCTC | 2 cut(s) | 382, 674 |
| AlwI | GGATC | 1 cut(s) | 293 |
| AoxI | GGCC | 3 cut(s) | 3, 433, 475 |
| ApeKI | GCWGC | 2 cut(s) | 636, 815 |
| AseI | ATTAAT | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 2 cut(s) | 25, 188 |
| AsuII | TTCGAA | 1 cut(s) | 451 |
| AxyI | CCTNAGG | 1 cut(s) | 792 |
| BalI | TGGCCA | 2 cut(s) | 5, 435 |
| BanII | GRGCYC | 1 cut(s) | 227 |
| BbsI | GAAGAC | 1 cut(s) | 22 |
| BbvI | GCAGC | 2 cut(s) | 623, 802 |
| BccI | CCATC | 6 cut(s) | 67, 152, 362, 467, 520, 626 |
| BceAI | ACGGC | 1 cut(s) | 803 |
| BciT130I | CCWGG | 1 cut(s) | 47 |
| BciVI | GTATCC | 1 cut(s) | 53 |
| BcoDI | GTCTC | 2 cut(s) | 382, 674 |
| BfmI | CTRYAG | 1 cut(s) | 247 |
| BfuI | GTATCC | 1 cut(s) | 53 |
| BisI | GCNGC | 2 cut(s) | 637, 816 |
| BlsI | GCNGC | 2 cut(s) | 638, 817 |
| Bme1390I | CCNGG | 1 cut(s) | 47 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmrFI | CCNGG | 1 cut(s) | 47 |
| BmsI | GCATC | 5 cut(s) | 43, 411, 582, 727, 749 |
| BpiI | GAAGAC | 1 cut(s) | 22 |
| BpmI | CTGGAG | 1 cut(s) | 753 |
| Bpu14I | TTCGAA | 1 cut(s) | 451 |
| Bsa29I | ATCGAT | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 2 cut(s) | 219, 658 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 326, 554 |
| Bse1I | ACTGG | 1 cut(s) | 6 |
| Bse21I | CCTNAGG | 1 cut(s) | 792 |
| BseBI | CCWGG | 1 cut(s) | 47 |
| BseCI | ATCGAT | 1 cut(s) | 288 |
| BseDI | CCNNGG | 2 cut(s) | 219, 658 |
| BseGI | GGATG | 2 cut(s) | 78, 163 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 326, 554 |
| BseMII | CTCAG | 4 cut(s) | 408, 492, 783, 834 |
| BseNI | ACTGG | 1 cut(s) | 6 |
| BseXI | GCAGC | 2 cut(s) | 623, 802 |
| BseYI | CCCAGC | 1 cut(s) | 383 |
| BsgI | GTGCAG | 1 cut(s) | 622 |
| BshFI | GGCC | 3 cut(s) | 5, 435, 477 |
| BshVI | ATCGAT | 1 cut(s) | 288 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 326, 554 |
| BsmAI | GTCTC | 2 cut(s) | 382, 674 |
| BsmI | GAATGC | 1 cut(s) | 803 |
| BsnI | GGCC | 3 cut(s) | 5, 435, 477 |
| Bsp119I | TTCGAA | 1 cut(s) | 451 |
| Bsp1286I | GDGCHC | 1 cut(s) | 227 |
| Bsp143I | GATC | 2 cut(s) | 205, 285 |
| BspACI | CCGC | 1 cut(s) | 836 |
| BspANI | GGCC | 3 cut(s) | 5, 435, 477 |
| BspCNI | CTCAG | 4 cut(s) | 409, 493, 784, 835 |
| BspDI | ATCGAT | 1 cut(s) | 288 |
| BspHI | TCATGA | 1 cut(s) | 829 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspPI | GGATC | 1 cut(s) | 293 |
| BspT104I | TTCGAA | 1 cut(s) | 451 |
| BsrI | ACTGG | 1 cut(s) | 6 |
| BssECI | CCNNGG | 2 cut(s) | 219, 658 |
| BssMI | GATC | 2 cut(s) | 205, 285 |
| BssT1I | CCWWGG | 1 cut(s) | 219 |
| Bst2UI | CCWGG | 1 cut(s) | 47 |
| Bst4CI | ACNGT | 3 cut(s) | 146, 167, 811 |
| BstBI | TTCGAA | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 6 cut(s) | 417, 501, 518, 577, 792, 843 |
| BstEII | GGTNACC | 1 cut(s) | 214 |
| BstF5I | GGATG | 2 cut(s) | 78, 163 |
| BstKTI | GATC | 2 cut(s) | 208, 288 |
| BstMAI | GTCTC | 2 cut(s) | 382, 674 |
| BstMBI | GATC | 2 cut(s) | 205, 285 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 848 |
| BstNI | CCWGG | 1 cut(s) | 47 |
| BstNSI | RCATGY | 1 cut(s) | 86 |
| BstPI | GGTNACC | 1 cut(s) | 214 |
| BstSCI | CCNGG | 1 cut(s) | 45 |
| BstSFI | CTRYAG | 1 cut(s) | 247 |
| BstV1I | GCAGC | 2 cut(s) | 623, 802 |
| BstV2I | GAAGAC | 1 cut(s) | 22 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 94 |
| Bsu15I | ATCGAT | 1 cut(s) | 288 |
| Bsu36I | CCTNAGG | 1 cut(s) | 792 |
| BsuI | GTATCC | 1 cut(s) | 53 |
| BsuRI | GGCC | 3 cut(s) | 5, 435, 477 |
| BsuTUI | ATCGAT | 1 cut(s) | 288 |
| BtsCI | GGATG | 2 cut(s) | 78, 163 |
| BtsIMutI | CAGTG | 1 cut(s) | 163 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CciI | TCATGA | 1 cut(s) | 829 |
| ClaI | ATCGAT | 1 cut(s) | 288 |
| CviAII | CATG | 3 cut(s) | 83, 229, 830 |
| DdeI | CTNAG | 6 cut(s) | 417, 501, 518, 577, 792, 843 |
| DpnI | GATC | 2 cut(s) | 207, 287 |
| DpnII | GATC | 2 cut(s) | 205, 285 |
| EaeI | YGGCCR | 2 cut(s) | 3, 433 |
| Eco130I | CCWWGG | 1 cut(s) | 219 |
| Eco24I | GRGCYC | 1 cut(s) | 227 |
| Eco57I | CTGAAG | 1 cut(s) | 22 |
| Eco81I | CCTNAGG | 1 cut(s) | 792 |
| Eco91I | GGTNACC | 1 cut(s) | 214 |
| EcoO65I | GGTNACC | 1 cut(s) | 214 |
| EcoRII | CCWGG | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 1 cut(s) | 219 |
| EcoT22I | ATGCAT | 1 cut(s) | 742 |
| EcoT38I | GRGCYC | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 219 |
| FaeI | CATG | 3 cut(s) | 86, 232, 833 |
| FatI | CATG | 3 cut(s) | 82, 228, 829 |
| FauI | CCCGC | 1 cut(s) | 829 |
| FblI | GTMKAC | 1 cut(s) | 786 |
| Fnu4HI | GCNGC | 2 cut(s) | 637, 816 |
| FokI | GGATG | 2 cut(s) | 85, 170 |
| FriOI | GRGCYC | 1 cut(s) | 227 |
| Fsp4HI | GCNGC | 2 cut(s) | 637, 816 |
| GluI | GCNGC | 2 cut(s) | 637, 816 |
| GsaI | CCCAGC | 1 cut(s) | 387 |
| GsuI | CTGGAG | 1 cut(s) | 753 |
| HaeIII | GGCC | 3 cut(s) | 5, 435, 477 |
| Hin1II | CATG | 3 cut(s) | 86, 232, 833 |
| HincII | GTYRAC | 1 cut(s) | 787 |
| HindII | GTYRAC | 1 cut(s) | 787 |
| HinfI | GANTC | 1 cut(s) | 109 |
| HphI | GGTGA | 2 cut(s) | 25, 188 |
| Hpy166II | GTNNAC | 1 cut(s) | 787 |
| Hpy188I | TCNGA | 3 cut(s) | 418, 502, 659 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 443, 732, 830 |
| Hpy8I | GTNNAC | 1 cut(s) | 787 |
| HpyAV | CCTTC | 3 cut(s) | 46, 524, 769 |
| HpyCH4III | ACNGT | 3 cut(s) | 146, 167, 811 |
| HpyCH4V | TGCA | 6 cut(s) | 56, 63, 378, 424, 639, 740 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 848 |
| HpyF3I | CTNAG | 6 cut(s) | 417, 501, 518, 577, 792, 843 |
| Hsp92II | CATG | 3 cut(s) | 86, 232, 833 |
| Kzo9I | GATC | 2 cut(s) | 205, 285 |
| LmnI | GCTCC | 2 cut(s) | 230, 610 |
| LpnPI | CCDG | 9 cut(s) | 19, 32, 36, 59, 369, 456, 561, 717, 804 |
| Lsp1109I | GCAGC | 2 cut(s) | 623, 802 |
| LweI | GCATC | 5 cut(s) | 43, 411, 582, 727, 749 |
| MaeIII | GTNAC | 3 cut(s) | 161, 214, 482 |
| MalI | GATC | 2 cut(s) | 207, 287 |
| MboI | GATC | 2 cut(s) | 205, 285 |
| MboII | GAAGA | 2 cut(s) | 22, 719 |
| MfeI | CAATTG | 1 cut(s) | 507 |
| MhlI | GDGCHC | 1 cut(s) | 227 |
| MlsI | TGGCCA | 2 cut(s) | 5, 435 |
| MluCI | AATT | 6 cut(s) | 120, 330, 507, 512, 651, 752 |
| MluNI | TGGCCA | 2 cut(s) | 5, 435 |
| MnlI | CCTC | 9 cut(s) | 167, 268, 488, 496, 653, 681, 714, 787, 826 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 435 |
| Mph1103I | ATGCAT | 1 cut(s) | 742 |
| MscI | TGGCCA | 2 cut(s) | 5, 435 |
| MseI | TTAA | 3 cut(s) | 99, 234, 261 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 435 |
| MspR9I | CCNGG | 1 cut(s) | 47 |
| MunI | CAATTG | 1 cut(s) | 507 |
| Mva1269I | GAATGC | 1 cut(s) | 803 |
| MvaI | CCWGG | 1 cut(s) | 47 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 848 |
| NdeII | GATC | 2 cut(s) | 205, 285 |
| NlaIII | CATG | 3 cut(s) | 86, 232, 833 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NmuCI | GTSAC | 1 cut(s) | 161 |
| NsiI | ATGCAT | 1 cut(s) | 742 |
| NspI | RCATGY | 1 cut(s) | 86 |
| NspV | TTCGAA | 1 cut(s) | 451 |
| PaeI | GCATGC | 1 cut(s) | 86 |
| PagI | TCATGA | 1 cut(s) | 829 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 270 |
| PctI | GAATGC | 1 cut(s) | 803 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 554 |
| PkrI | GCNGC | 2 cut(s) | 638, 817 |
| PshBI | ATTAAT | 1 cut(s) | 234 |
| PsiI | TTATAA | 1 cut(s) | 459 |
| Psp6I | CCWGG | 1 cut(s) | 45 |
| PspEI | GGTNACC | 1 cut(s) | 214 |
| PspFI | CCCAGC | 1 cut(s) | 383 |
| PspGI | CCWGG | 1 cut(s) | 45 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| SalI | GTCGAC | 1 cut(s) | 785 |
| SaqAI | TTAA | 3 cut(s) | 99, 234, 261 |
| SatI | GCNGC | 2 cut(s) | 637, 816 |
| Sau3AI | GATC | 2 cut(s) | 205, 285 |
| ScrFI | CCNGG | 1 cut(s) | 47 |
| SduI | GDGCHC | 1 cut(s) | 227 |
| SfaNI | GCATC | 5 cut(s) | 43, 411, 582, 727, 749 |
| SfcI | CTRYAG | 1 cut(s) | 247 |
| SfuI | TTCGAA | 1 cut(s) | 451 |
| SphI | GCATGC | 1 cut(s) | 86 |
| Sse9I | AATT | 6 cut(s) | 120, 330, 507, 512, 651, 752 |
| SsiI | CCGC | 1 cut(s) | 836 |
| SspI | AATATT | 1 cut(s) | 463 |
| StyD4I | CCNGG | 1 cut(s) | 45 |
| StyI | CCWWGG | 1 cut(s) | 219 |
| TaaI | ACNGT | 3 cut(s) | 146, 167, 811 |
| TaqI | TCGA | 5 cut(s) | 288, 451, 686, 773, 786 |
| TasI | AATT | 6 cut(s) | 120, 330, 507, 512, 651, 752 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| Tru1I | TTAA | 3 cut(s) | 99, 234, 261 |
| Tru9I | TTAA | 3 cut(s) | 99, 234, 261 |
| TscAI | CASTG | 1 cut(s) | 170 |
| TseFI | GTSAC | 1 cut(s) | 161 |
| TseI | GCWGC | 2 cut(s) | 636, 815 |
| Tsp45I | GTSAC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 2 cut(s) | 230, 818 |
| TspGWI | ACGGA | 1 cut(s) | 279 |
| TspRI | CASTG | 1 cut(s) | 170 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 554 |
| VspI | ATTAAT | 1 cut(s) | 234 |
| XceI | RCATGY | 1 cut(s) | 86 |
| XmiI | GTMKAC | 1 cut(s) | 786 |
| Zsp2I | ATGCAT | 1 cut(s) | 742 |