Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 6 - 38 | 3.9e-08 | PPR repeat |
| PPR_2 | PF13041 | 9 - 57 | 6.8e-13 | PPR repeat family |
| PPR_3 | PF13812 | 9 - 58 | 5.2e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 40 - 72 | 1.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 44 - 92 | 6.7e-12 | PPR repeat family |
| PPR_3 | PF13812 | 68 - 126 | 1.8e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 75 - 108 | 9.1e-09 | PPR repeat |
| PPR_2 | PF13041 | 79 - 128 | 4.1e-13 | PPR repeat family |
| PPR_1 | PF12854 | 112 - 139 | 1.5e-06 | PPR repeat |
| PPR_long | PF17177 | 175 - 283 | 2.5e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 193 - 241 | 4.9e-15 | PPR repeat family |
| PPR_3 | PF13812 | 221 - 273 | 2.3e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 223 - 256 | 6.8e-14 | PPR repeat |
| PPR | PF01535 | 231 - 260 | 1.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 236 - 275 | 5.7e-13 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 16 |
| AccI | GTMKAC | 2 cut(s) | 22, 369 |
| AccII | CGCG | 1 cut(s) | 86 |
| AciI | CCGC | 2 cut(s) | 84, 86 |
| AcoI | YGGCCR | 2 cut(s) | 87, 460 |
| AcsI | RAATTY | 2 cut(s) | 522, 626 |
| AcyI | GRCGYC | 1 cut(s) | 13 |
| AfaI | GTAC | 1 cut(s) | 301 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 56 |
| AgeI | ACCGGT | 1 cut(s) | 49 |
| AgsI | TTSAA | 7 cut(s) | 43, 253, 313, 358, 605, 632, 758 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 683 |
| AhlI | ACTAGT | 1 cut(s) | 181 |
| AluBI | AGCT | 2 cut(s) | 97, 620 |
| AluI | AGCT | 2 cut(s) | 97, 620 |
| Alw26I | GTCTC | 1 cut(s) | 830 |
| AoxI | GGCC | 3 cut(s) | 87, 460, 502 |
| ApoI | RAATTY | 2 cut(s) | 522, 626 |
| AseI | ATTAAT | 1 cut(s) | 708 |
| AsiGI | ACCGGT | 1 cut(s) | 49 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 203 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 168, 201 |
| BalI | TGGCCA | 1 cut(s) | 462 |
| BbsI | GAAGAC | 1 cut(s) | 640 |
| BccI | CCATC | 6 cut(s) | 64, 103, 161, 385, 547, 841 |
| BceAI | ACGGC | 1 cut(s) | 546 |
| BclI | TGATCA | 1 cut(s) | 261 |
| BcoDI | GTCTC | 1 cut(s) | 830 |
| BcuI | ACTAGT | 1 cut(s) | 181 |
| BfaI | CTAG | 2 cut(s) | 182, 281 |
| BfmI | CTRYAG | 1 cut(s) | 145 |
| BisI | GCNGC | 1 cut(s) | 87 |
| BlsI | GCNGC | 1 cut(s) | 88 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 683 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmsI | GCATC | 4 cut(s) | 113, 181, 391, 438 |
| BpiI | GAAGAC | 1 cut(s) | 640 |
| BpmI | CTGGAG | 3 cut(s) | 219, 642, 768 |
| Bsa29I | ATCGAT | 1 cut(s) | 399 |
| BsaBI | GATNNNNATC | 1 cut(s) | 395 |
| BsaHI | GRCGYC | 1 cut(s) | 13 |
| BsaJI | CCNNGG | 2 cut(s) | 84, 814 |
| BsaWI | WCCGGW | 1 cut(s) | 49 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 56 |
| Bse118I | RCCGGY | 1 cut(s) | 49 |
| Bse3DI | GCAATG | 2 cut(s) | 178, 201 |
| Bse8I | GATNNNNATC | 1 cut(s) | 395 |
| BseCI | ATCGAT | 1 cut(s) | 399 |
| BseDI | CCNNGG | 2 cut(s) | 84, 814 |
| BseGI | GGATG | 3 cut(s) | 128, 396, 513 |
| BseJI | GATNNNNATC | 1 cut(s) | 395 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseMI | GCAATG | 2 cut(s) | 178, 201 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| Bsh1236I | CGCG | 1 cut(s) | 86 |
| BshFI | GGCC | 3 cut(s) | 89, 462, 504 |
| BshTI | ACCGGT | 1 cut(s) | 49 |
| BshVI | ATCGAT | 1 cut(s) | 399 |
| BsiSI | CCGG | 1 cut(s) | 50 |
| BslFI | GGGAC | 2 cut(s) | 24, 741 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BsmAI | GTCTC | 1 cut(s) | 830 |
| BsmFI | GGGAC | 2 cut(s) | 24, 741 |
| BsnI | GGCC | 3 cut(s) | 89, 462, 504 |
| Bsp143I | GATC | 1 cut(s) | 261 |
| BspACI | CCGC | 2 cut(s) | 84, 86 |
| BspANI | GGCC | 3 cut(s) | 89, 462, 504 |
| BspCNI | CTCAG | 1 cut(s) | 221 |
| BspDI | ATCGAT | 1 cut(s) | 399 |
| BspFNI | CGCG | 1 cut(s) | 86 |
| BspHI | TCATGA | 1 cut(s) | 857 |
| BsrDI | GCAATG | 2 cut(s) | 178, 201 |
| BsrFI | RCCGGY | 1 cut(s) | 49 |
| BssAI | RCCGGY | 1 cut(s) | 49 |
| BssECI | CCNNGG | 2 cut(s) | 84, 814 |
| BssMI | GATC | 1 cut(s) | 261 |
| BssNAI | GTATAC | 1 cut(s) | 23 |
| BssNI | GRCGYC | 1 cut(s) | 13 |
| Bst1107I | GTATAC | 1 cut(s) | 23 |
| Bst4CI | ACNGT | 2 cut(s) | 164, 595 |
| Bst6I | CTCTTC | 3 cut(s) | 209, 217, 762 |
| BstACI | GRCGYC | 1 cut(s) | 13 |
| BstC8I | GCNNGC | 1 cut(s) | 128 |
| BstDEI | CTNAG | 3 cut(s) | 101, 208, 545 |
| BstDSI | CCRYGG | 1 cut(s) | 84 |
| BstF5I | GGATG | 3 cut(s) | 128, 396, 513 |
| BstFNI | CGCG | 1 cut(s) | 86 |
| BstKTI | GATC | 1 cut(s) | 264 |
| BstMAI | GTCTC | 1 cut(s) | 830 |
| BstMBI | GATC | 1 cut(s) | 261 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 282 |
| BstSFI | CTRYAG | 1 cut(s) | 145 |
| BstUI | CGCG | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 1 cut(s) | 640 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 568 |
| BstZ17I | GTATAC | 1 cut(s) | 23 |
| Bsu15I | ATCGAT | 1 cut(s) | 399 |
| BsuRI | GGCC | 3 cut(s) | 89, 462, 504 |
| BsuTUI | ATCGAT | 1 cut(s) | 399 |
| BtgI | CCRYGG | 1 cut(s) | 84 |
| BtsCI | GGATG | 3 cut(s) | 128, 396, 513 |
| BtsIMutI | CAGTG | 1 cut(s) | 591 |
| Cac8I | GCNNGC | 1 cut(s) | 128 |
| CciI | TCATGA | 1 cut(s) | 857 |
| Cfr10I | RCCGGY | 1 cut(s) | 49 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| Cfr42I | CCGCGG | 1 cut(s) | 87 |
| ClaI | ATCGAT | 1 cut(s) | 399 |
| CseI | GACGC | 2 cut(s) | 380, 434 |
| Csp6I | GTAC | 1 cut(s) | 300 |
| CspAI | ACCGGT | 1 cut(s) | 49 |
| CviAII | CATG | 3 cut(s) | 67, 507, 858 |
| CviQI | GTAC | 1 cut(s) | 300 |
| DdeI | CTNAG | 3 cut(s) | 101, 208, 545 |
| DpnI | GATC | 1 cut(s) | 263 |
| DpnII | GATC | 1 cut(s) | 261 |
| DriI | GACNNNNNGTC | 1 cut(s) | 683 |
| EaeI | YGGCCR | 2 cut(s) | 87, 460 |
| Eam1104I | CTCTTC | 3 cut(s) | 209, 217, 762 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 683 |
| EarI | CTCTTC | 3 cut(s) | 209, 217, 762 |
| FaeI | CATG | 3 cut(s) | 70, 510, 861 |
| FaqI | GGGAC | 2 cut(s) | 24, 741 |
| FatI | CATG | 3 cut(s) | 66, 506, 857 |
| FauNDI | CATATG | 1 cut(s) | 484 |
| FbaI | TGATCA | 1 cut(s) | 261 |
| FblI | GTMKAC | 2 cut(s) | 22, 369 |
| Fnu4HI | GCNGC | 1 cut(s) | 87 |
| FokI | GGATG | 3 cut(s) | 135, 403, 500 |
| Fsp4HI | GCNGC | 1 cut(s) | 87 |
| FspBI | CTAG | 2 cut(s) | 182, 281 |
| GluI | GCNGC | 1 cut(s) | 87 |
| GsuI | CTGGAG | 3 cut(s) | 219, 642, 768 |
| HaeIII | GGCC | 3 cut(s) | 89, 462, 504 |
| HapII | CCGG | 1 cut(s) | 50 |
| HgaI | GACGC | 2 cut(s) | 380, 434 |
| Hin1I | GRCGYC | 1 cut(s) | 13 |
| Hin1II | CATG | 3 cut(s) | 70, 510, 861 |
| HinfI | GANTC | 1 cut(s) | 270 |
| HpaII | CCGG | 1 cut(s) | 50 |
| Hpy166II | GTNNAC | 2 cut(s) | 23, 370 |
| Hpy188I | TCNGA | 4 cut(s) | 211, 330, 417, 815 |
| Hpy188III | TCNNGA | 8 cut(s) | 236, 341, 442, 470, 688, 758, 785, 858 |
| Hpy8I | GTNNAC | 2 cut(s) | 23, 370 |
| HpyAV | CCTTC | 5 cut(s) | 107, 290, 364, 599, 766 |
| HpyCH4III | ACNGT | 2 cut(s) | 164, 595 |
| HpyCH4IV | ACGT | 1 cut(s) | 13 |
| HpyCH4V | TGCA | 9 cut(s) | 66, 194, 276, 349, 404, 451, 615, 638, 795 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 282 |
| HpyF3I | CTNAG | 3 cut(s) | 101, 208, 545 |
| HpySE526I | ACGT | 1 cut(s) | 13 |
| Hsp92I | GRCGYC | 1 cut(s) | 13 |
| Hsp92II | CATG | 3 cut(s) | 70, 510, 861 |
| Ksp22I | TGATCA | 1 cut(s) | 261 |
| KspI | CCGCGG | 1 cut(s) | 87 |
| Kzo9I | GATC | 1 cut(s) | 261 |
| LmnI | GCTCC | 1 cut(s) | 238 |
| LpnPI | CCDG | 8 cut(s) | 63, 249, 354, 483, 606, 673, 693, 798 |
| LweI | GCATC | 4 cut(s) | 113, 181, 391, 438 |
| MaeI | CTAG | 2 cut(s) | 182, 281 |
| MaeII | ACGT | 1 cut(s) | 13 |
| MaeIII | GTNAC | 2 cut(s) | 34, 509 |
| MalI | GATC | 1 cut(s) | 263 |
| MboI | GATC | 1 cut(s) | 261 |
| MboII | GAAGA | 6 cut(s) | 118, 196, 234, 457, 640, 779 |
| MlsI | TGGCCA | 1 cut(s) | 462 |
| MluCI | AATT | 4 cut(s) | 522, 566, 585, 626 |
| MluNI | TGGCCA | 1 cut(s) | 462 |
| MlyI | GAGTC | 1 cut(s) | 279 |
| MmeI | TCCRAC | 1 cut(s) | 541 |
| MnlI | CCTC | 6 cut(s) | 212, 218, 297, 379, 718, 809 |
| Mox20I | TGGCCA | 1 cut(s) | 462 |
| MroXI | GAANNNNTTC | 1 cut(s) | 203 |
| MscI | TGGCCA | 1 cut(s) | 462 |
| MseI | TTAA | 1 cut(s) | 708 |
| Msp20I | TGGCCA | 1 cut(s) | 462 |
| MspA1I | CMGCKG | 1 cut(s) | 86 |
| MspI | CCGG | 1 cut(s) | 50 |
| MvnI | CGCG | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 282 |
| NdeI | CATATG | 1 cut(s) | 484 |
| NdeII | GATC | 1 cut(s) | 261 |
| NlaIII | CATG | 3 cut(s) | 70, 510, 861 |
| NmuCI | GTSAC | 1 cut(s) | 509 |
| PagI | TCATGA | 1 cut(s) | 857 |
| PdmI | GAANNNNTTC | 1 cut(s) | 203 |
| PinAI | ACCGGT | 1 cut(s) | 49 |
| PkrI | GCNGC | 1 cut(s) | 88 |
| PleI | GAGTC | 1 cut(s) | 278 |
| PpsI | GAGTC | 1 cut(s) | 278 |
| PshBI | ATTAAT | 1 cut(s) | 708 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| RsaI | GTAC | 1 cut(s) | 301 |
| RsaNI | GTAC | 1 cut(s) | 300 |
| SacII | CCGCGG | 1 cut(s) | 87 |
| SaqAI | TTAA | 1 cut(s) | 708 |
| SatI | GCNGC | 1 cut(s) | 87 |
| Sau3AI | GATC | 1 cut(s) | 261 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SchI | GAGTC | 1 cut(s) | 279 |
| SfaNI | GCATC | 4 cut(s) | 113, 181, 391, 438 |
| SfcI | CTRYAG | 1 cut(s) | 145 |
| Sfr303I | CCGCGG | 1 cut(s) | 87 |
| SgrBI | CCGCGG | 1 cut(s) | 87 |
| SpeI | ACTAGT | 1 cut(s) | 181 |
| Sse9I | AATT | 4 cut(s) | 522, 566, 585, 626 |
| SsiI | CCGC | 2 cut(s) | 84, 86 |
| SspI | AATATT | 1 cut(s) | 580 |
| SspMI | CTAG | 2 cut(s) | 182, 281 |
| TaaI | ACNGT | 2 cut(s) | 164, 595 |
| TaiI | ACGT | 1 cut(s) | 16 |
| TaqI | TCGA | 2 cut(s) | 399, 676 |
| TasI | AATT | 4 cut(s) | 522, 566, 585, 626 |
| TauI | GCSGC | 1 cut(s) | 89 |
| Tru1I | TTAA | 1 cut(s) | 708 |
| Tru9I | TTAA | 1 cut(s) | 708 |
| TscAI | CASTG | 1 cut(s) | 598 |
| TseFI | GTSAC | 1 cut(s) | 509 |
| Tsp45I | GTSAC | 1 cut(s) | 509 |
| TspDTI | ATGAA | 3 cut(s) | 212, 330, 753 |
| TspRI | CASTG | 1 cut(s) | 598 |
| VspI | ATTAAT | 1 cut(s) | 708 |
| XapI | RAATTY | 2 cut(s) | 522, 626 |
| XmiI | GTMKAC | 2 cut(s) | 22, 369 |
| XmnI | GAANNNNTTC | 1 cut(s) | 203 |
| XspI | CTAG | 2 cut(s) | 182, 281 |
| ZraI | GACGTC | 1 cut(s) | 14 |