Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 54 | 5.2e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 4 - 36 | 1.8e-12 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 9.3e-19 | PPR repeat family |
| TPR_24 | PF23276 | 9 - 103 | 4e-07 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 11 - 40 | 4.4e-07 | PPR repeat |
| PPR_long | PF17177 | 26 - 99 | 1.5e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 40 - 71 | 1.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 76 - 103 | 2.5e-11 | PPR repeat |
| PPR_2 | PF13041 | 78 - 103 | 1.2e-07 | PPR repeat family |
| PPR | PF01535 | 81 - 104 | 2.3e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 386 |
| AciI | CCGC | 2 cut(s) | 83, 384 |
| AgsI | TTSAA | 1 cut(s) | 290 |
| AluBI | AGCT | 2 cut(s) | 113, 321 |
| AluI | AGCT | 2 cut(s) | 113, 321 |
| Alw21I | GWGCWC | 1 cut(s) | 323 |
| Alw26I | GTCTC | 3 cut(s) | 9, 322, 382 |
| AoxI | GGCC | 2 cut(s) | 118, 160 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 95 |
| AspS9I | GGNCC | 1 cut(s) | 118 |
| AsuC2I | CCSGG | 1 cut(s) | 358 |
| BanII | GRGCYC | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 1 cut(s) | 323 |
| BccI | CCATC | 2 cut(s) | 47, 205 |
| BceAI | ACGGC | 1 cut(s) | 232 |
| BciVI | GTATCC | 1 cut(s) | 69 |
| BcnI | CCSGG | 1 cut(s) | 358 |
| BcoDI | GTCTC | 3 cut(s) | 9, 322, 382 |
| BfaI | CTAG | 2 cut(s) | 332, 410 |
| BfmI | CTRYAG | 1 cut(s) | 271 |
| BfuI | GTATCC | 1 cut(s) | 69 |
| BglII | AGATCT | 1 cut(s) | 301 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 1 cut(s) | 358 |
| BmgT120I | GGNCC | 1 cut(s) | 118 |
| BmiI | GGNNCC | 1 cut(s) | 21 |
| BmrFI | CCNGG | 1 cut(s) | 358 |
| BpuMI | CCSGG | 1 cut(s) | 358 |
| Bsa29I | ATCGAT | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 1 cut(s) | 262 |
| Bse1I | ACTGG | 1 cut(s) | 21 |
| BseCI | ATCGAT | 1 cut(s) | 51 |
| BseDI | CCNNGG | 1 cut(s) | 262 |
| BseGI | GGATG | 1 cut(s) | 401 |
| BseMII | CTCAG | 2 cut(s) | 327, 383 |
| BseNI | ACTGG | 1 cut(s) | 21 |
| BseRI | GAGGAG | 1 cut(s) | 85 |
| Bsh1236I | CGCG | 1 cut(s) | 386 |
| BshFI | GGCC | 2 cut(s) | 120, 162 |
| BshVI | ATCGAT | 1 cut(s) | 51 |
| BsiHKAI | GWGCWC | 1 cut(s) | 323 |
| BsiSI | CCGG | 1 cut(s) | 358 |
| BslFI | GGGAC | 1 cut(s) | 340 |
| BsmAI | GTCTC | 3 cut(s) | 9, 322, 382 |
| BsmFI | GGGAC | 1 cut(s) | 340 |
| BsnI | GGCC | 2 cut(s) | 120, 162 |
| Bsp1286I | GDGCHC | 1 cut(s) | 323 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspACI | CCGC | 2 cut(s) | 83, 384 |
| BspANI | GGCC | 2 cut(s) | 120, 162 |
| BspCNI | CTCAG | 2 cut(s) | 326, 382 |
| BspDI | ATCGAT | 1 cut(s) | 51 |
| BspFNI | CGCG | 1 cut(s) | 386 |
| BspLI | GGNNCC | 1 cut(s) | 21 |
| BspMAI | CTGCAG | 1 cut(s) | 275 |
| BsrI | ACTGG | 1 cut(s) | 21 |
| BssECI | CCNNGG | 1 cut(s) | 262 |
| BssMI | GATC | 1 cut(s) | 301 |
| BssT1I | CCWWGG | 1 cut(s) | 262 |
| Bst4CI | ACNGT | 2 cut(s) | 31, 354 |
| Bst6I | CTCTTC | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 1 cut(s) | 111 |
| BstDEI | CTNAG | 2 cut(s) | 313, 369 |
| BstF5I | GGATG | 1 cut(s) | 401 |
| BstFNI | CGCG | 1 cut(s) | 386 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMAI | GTCTC | 3 cut(s) | 9, 322, 382 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstSCI | CCNGG | 1 cut(s) | 356 |
| BstSFI | CTRYAG | 1 cut(s) | 271 |
| BstUI | CGCG | 1 cut(s) | 386 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| Bsu15I | ATCGAT | 1 cut(s) | 51 |
| BsuI | GTATCC | 1 cut(s) | 69 |
| BsuRI | GGCC | 2 cut(s) | 120, 162 |
| BsuTUI | ATCGAT | 1 cut(s) | 51 |
| BtsCI | GGATG | 1 cut(s) | 401 |
| Cac8I | GCNNGC | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 1 cut(s) | 118 |
| ClaI | ATCGAT | 1 cut(s) | 51 |
| CviJI | RGCY | 5 cut(s) | 113, 120, 162, 232, 321 |
| CviKI_1 | RGCY | 5 cut(s) | 113, 120, 162, 232, 321 |
| DdeI | CTNAG | 2 cut(s) | 313, 369 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 1 cut(s) | 311 |
| EarI | CTCTTC | 1 cut(s) | 311 |
| Ecl136II | GAGCTC | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 1 cut(s) | 262 |
| Eco24I | GRGCYC | 1 cut(s) | 323 |
| Eco53kI | GAGCTC | 1 cut(s) | 321 |
| EcoICRI | GAGCTC | 1 cut(s) | 321 |
| EcoT14I | CCWWGG | 1 cut(s) | 262 |
| EcoT38I | GRGCYC | 1 cut(s) | 323 |
| ErhI | CCWWGG | 1 cut(s) | 262 |
| FaiI | YATR | 5 cut(s) | 39, 107, 144, 166, 249 |
| FaqI | GGGAC | 1 cut(s) | 340 |
| FauI | CCCGC | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FokI | GGATG | 1 cut(s) | 388 |
| FriOI | GRGCYC | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 2 cut(s) | 332, 410 |
| GluI | GCNGC | 1 cut(s) | 84 |
| HaeIII | GGCC | 2 cut(s) | 120, 162 |
| HapII | CCGG | 1 cut(s) | 358 |
| HinfI | GANTC | 3 cut(s) | 290, 361, 392 |
| HpaII | CCGG | 1 cut(s) | 358 |
| Hpy188I | TCNGA | 3 cut(s) | 138, 206, 316 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 327, 405 |
| Hpy99I | CGWCG | 2 cut(s) | 341, 391 |
| HpyCH4III | ACNGT | 2 cut(s) | 31, 354 |
| HpyCH4V | TGCA | 5 cut(s) | 63, 109, 146, 273, 296 |
| HpyF3I | CTNAG | 2 cut(s) | 313, 369 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LpnPI | CCDG | 5 cut(s) | 2, 36, 101, 264, 371 |
| MaeI | CTAG | 2 cut(s) | 332, 410 |
| MaeIII | GTNAC | 2 cut(s) | 8, 31 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 1 cut(s) | 298 |
| MfeI | CAATTG | 1 cut(s) | 192 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MhlI | GDGCHC | 1 cut(s) | 323 |
| MluCI | AATT | 1 cut(s) | 192 |
| MlyI | GAGTC | 2 cut(s) | 355, 386 |
| MnlI | CCTC | 3 cut(s) | 63, 66, 335 |
| MroXI | GAANNNNTTC | 1 cut(s) | 95 |
| MspI | CCGG | 1 cut(s) | 358 |
| MspR9I | CCNGG | 1 cut(s) | 358 |
| MunI | CAATTG | 1 cut(s) | 192 |
| MvnI | CGCG | 1 cut(s) | 386 |
| NciI | CCSGG | 1 cut(s) | 358 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIV | GGNNCC | 1 cut(s) | 21 |
| PdmI | GAANNNNTTC | 1 cut(s) | 95 |
| PfeI | GAWTC | 1 cut(s) | 290 |
| PfoI | TCCNGGA | 1 cut(s) | 356 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 2 cut(s) | 355, 386 |
| PpsI | GAGTC | 2 cut(s) | 355, 386 |
| Psp124BI | GAGCTC | 1 cut(s) | 323 |
| PspN4I | GGNNCC | 1 cut(s) | 21 |
| PspPI | GGNCC | 1 cut(s) | 118 |
| PstI | CTGCAG | 1 cut(s) | 275 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| SacI | GAGCTC | 1 cut(s) | 323 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| Sau96I | GGNCC | 1 cut(s) | 118 |
| SchI | GAGTC | 2 cut(s) | 355, 386 |
| ScrFI | CCNGG | 1 cut(s) | 358 |
| SduI | GDGCHC | 1 cut(s) | 323 |
| SetI | ASST | 3 cut(s) | 115, 268, 323 |
| SfcI | CTRYAG | 1 cut(s) | 271 |
| Sse9I | AATT | 1 cut(s) | 192 |
| SsiI | CCGC | 2 cut(s) | 83, 384 |
| SspI | AATATT | 1 cut(s) | 238 |
| SspMI | CTAG | 2 cut(s) | 332, 410 |
| SstI | GAGCTC | 1 cut(s) | 323 |
| StyD4I | CCNGG | 1 cut(s) | 356 |
| StyI | CCWWGG | 1 cut(s) | 262 |
| TaaI | ACNGT | 2 cut(s) | 31, 354 |
| TaqI | TCGA | 2 cut(s) | 51, 326 |
| TasI | AATT | 1 cut(s) | 192 |
| TauI | GCSGC | 1 cut(s) | 86 |
| TfiI | GAWTC | 1 cut(s) | 290 |
| TspGWI | ACGGA | 4 cut(s) | 27, 354, 363, 404 |
| XmnI | GAANNNNTTC | 1 cut(s) | 95 |
| XspI | CTAG | 2 cut(s) | 332, 410 |