Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 9 - 132 | 1.3e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 16 - 72 | 2.8e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 28 - 76 | 1.3e-15 | PPR repeat family |
| PPR_1 | PF12854 | 59 - 90 | 4.7e-12 | PPR repeat |
| PPR_2 | PF13041 | 62 - 111 | 2e-15 | PPR repeat family |
| PPR | PF01535 | 66 - 92 | 7.4e-08 | PPR repeat |
| PPR_1 | PF12854 | 97 - 126 | 8.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 97 - 138 | 8.8e-07 | PPR repeat family |
| PPR_3 | PF13812 | 121 - 176 | 2.7e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 131 - 157 | 5.3e-06 | PPR repeat |
| PPR_2 | PF13041 | 133 - 181 | 1.1e-16 | PPR repeat family |
| PPR_3 | PF13812 | 160 - 212 | 1.5e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 163 - 195 | 1.5e-11 | PPR repeat |
| PPR | PF01535 | 171 - 200 | 1e-08 | PPR repeat |
| PPR_2 | PF13041 | 175 - 215 | 2.7e-11 | PPR repeat family |
| PPR_1 | PF12854 | 198 - 230 | 5.9e-07 | PPR repeat |
| PPR_2 | PF13041 | 204 - 248 | 3.6e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 662 |
| AciI | CCGC | 3 cut(s) | 192, 230, 456 |
| AcsI | RAATTY | 1 cut(s) | 237 |
| AcyI | GRCGYC | 1 cut(s) | 659 |
| AgsI | TTSAA | 7 cut(s) | 157, 242, 299, 425, 452, 560, 683 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 583, 615 |
| AluBI | AGCT | 2 cut(s) | 286, 440 |
| AluI | AGCT | 2 cut(s) | 286, 440 |
| Alw26I | GTCTC | 2 cut(s) | 650, 667 |
| AoxI | GGCC | 1 cut(s) | 322 |
| ApoI | RAATTY | 1 cut(s) | 237 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 180 |
| BanII | GRGCYC | 1 cut(s) | 74 |
| BauI | CACGAG | 1 cut(s) | 32 |
| BccI | CCATC | 1 cut(s) | 209 |
| BceAI | ACGGC | 1 cut(s) | 366 |
| BcoDI | GTCTC | 2 cut(s) | 650, 667 |
| BfaI | CTAG | 1 cut(s) | 272 |
| BfmI | CTRYAG | 2 cut(s) | 708, 723 |
| BglII | AGATCT | 3 cut(s) | 391, 463, 763 |
| BmiI | GGNNCC | 1 cut(s) | 73 |
| BmsI | GCATC | 3 cut(s) | 258, 703, 725 |
| BpuEI | CTTGAG | 1 cut(s) | 713 |
| BsaHI | GRCGYC | 1 cut(s) | 659 |
| BsaJI | CCNNGG | 1 cut(s) | 634 |
| BseDI | CCNNGG | 1 cut(s) | 634 |
| BseGI | GGATG | 1 cut(s) | 602 |
| BseMII | CTCAG | 2 cut(s) | 255, 566 |
| BseRI | GAGGAG | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 324 |
| BsmAI | GTCTC | 2 cut(s) | 650, 667 |
| BsmBI | CGTCTC | 1 cut(s) | 650 |
| BsnI | GGCC | 1 cut(s) | 324 |
| Bsp1286I | GDGCHC | 1 cut(s) | 74 |
| Bsp143I | GATC | 4 cut(s) | 52, 391, 463, 763 |
| BspACI | CCGC | 3 cut(s) | 192, 230, 456 |
| BspANI | GGCC | 1 cut(s) | 324 |
| BspCNI | CTCAG | 2 cut(s) | 256, 567 |
| BspLI | GGNNCC | 1 cut(s) | 73 |
| BspMAI | CTGCAG | 1 cut(s) | 712 |
| BssECI | CCNNGG | 1 cut(s) | 634 |
| BssMI | GATC | 4 cut(s) | 52, 391, 463, 763 |
| BssNI | GRCGYC | 1 cut(s) | 659 |
| BssSI | CACGAG | 1 cut(s) | 32 |
| Bst2BI | CACGAG | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 5 cut(s) | 8, 14, 79, 520, 783 |
| Bst6I | CTCTTC | 1 cut(s) | 473 |
| BstACI | GRCGYC | 1 cut(s) | 659 |
| BstDEI | CTNAG | 2 cut(s) | 264, 575 |
| BstF5I | GGATG | 1 cut(s) | 602 |
| BstKTI | GATC | 4 cut(s) | 55, 394, 466, 766 |
| BstMAI | GTCTC | 2 cut(s) | 650, 667 |
| BstMBI | GATC | 4 cut(s) | 52, 391, 463, 763 |
| BstSFI | CTRYAG | 2 cut(s) | 708, 723 |
| BstX2I | RGATCY | 3 cut(s) | 391, 463, 763 |
| BstYI | RGATCY | 3 cut(s) | 391, 463, 763 |
| BsuRI | GGCC | 1 cut(s) | 324 |
| BtsCI | GGATG | 1 cut(s) | 602 |
| BtsIMutI | CAGTG | 2 cut(s) | 516, 779 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 193, 228 |
| CviAII | CATG | 4 cut(s) | 140, 320, 530, 545 |
| DdeI | CTNAG | 2 cut(s) | 264, 575 |
| DpnI | GATC | 4 cut(s) | 54, 393, 465, 765 |
| DpnII | GATC | 4 cut(s) | 52, 391, 463, 763 |
| Eam1104I | CTCTTC | 1 cut(s) | 473 |
| EarI | CTCTTC | 1 cut(s) | 473 |
| Eco24I | GRGCYC | 1 cut(s) | 74 |
| EcoT22I | ATGCAT | 1 cut(s) | 718 |
| EcoT38I | GRGCYC | 1 cut(s) | 74 |
| Esp3I | CGTCTC | 1 cut(s) | 650 |
| FaeI | CATG | 4 cut(s) | 143, 323, 533, 548 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 378, 410, 675, 707 |
| FatI | CATG | 4 cut(s) | 139, 319, 529, 544 |
| FauI | CCCGC | 1 cut(s) | 223 |
| FokI | GGATG | 1 cut(s) | 609 |
| FriOI | GRGCYC | 1 cut(s) | 74 |
| FspBI | CTAG | 1 cut(s) | 272 |
| HaeIII | GGCC | 1 cut(s) | 324 |
| Hin1I | GRCGYC | 1 cut(s) | 659 |
| Hin1II | CATG | 4 cut(s) | 143, 323, 533, 548 |
| HinfI | GANTC | 3 cut(s) | 452, 526, 791 |
| Hpy166II | GTNNAC | 1 cut(s) | 409 |
| Hpy188I | TCNGA | 3 cut(s) | 265, 509, 635 |
| Hpy188III | TCNNGA | 3 cut(s) | 242, 683, 795 |
| Hpy8I | GTNNAC | 1 cut(s) | 409 |
| Hpy99I | CGWCG | 1 cut(s) | 171 |
| HpyAV | CCTTC | 2 cut(s) | 419, 745 |
| HpyCH4III | ACNGT | 5 cut(s) | 8, 14, 79, 520, 783 |
| HpyCH4IV | ACGT | 2 cut(s) | 166, 659 |
| HpyCH4V | TGCA | 8 cut(s) | 31, 120, 143, 225, 435, 615, 710, 716 |
| HpyF3I | CTNAG | 2 cut(s) | 264, 575 |
| HpySE526I | ACGT | 2 cut(s) | 166, 659 |
| Hsp92I | GRCGYC | 1 cut(s) | 659 |
| Hsp92II | CATG | 4 cut(s) | 143, 323, 533, 548 |
| Kzo9I | GATC | 4 cut(s) | 52, 391, 463, 763 |
| LmnI | GCTCC | 1 cut(s) | 77 |
| LpnPI | CCDG | 6 cut(s) | 261, 296, 338, 350, 426, 752 |
| LweI | GCATC | 3 cut(s) | 258, 703, 725 |
| MaeI | CTAG | 1 cut(s) | 272 |
| MaeII | ACGT | 2 cut(s) | 166, 659 |
| MaeIII | GTNAC | 4 cut(s) | 8, 95, 278, 329 |
| MalI | GATC | 4 cut(s) | 54, 393, 465, 765 |
| MboI | GATC | 4 cut(s) | 52, 391, 463, 763 |
| MboII | GAAGA | 1 cut(s) | 460 |
| MflI | RGATCY | 3 cut(s) | 391, 463, 763 |
| MhlI | GDGCHC | 1 cut(s) | 74 |
| MluCI | AATT | 5 cut(s) | 237, 359, 447, 555, 728 |
| MnlI | CCTC | 5 cut(s) | 14, 28, 581, 629, 690 |
| Mph1103I | ATGCAT | 1 cut(s) | 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 180 |
| MseI | TTAA | 7 cut(s) | 81, 108, 366, 396, 551, 644, 785 |
| MslI | CAYNNNNRTG | 1 cut(s) | 521 |
| NdeII | GATC | 4 cut(s) | 52, 391, 463, 763 |
| NlaIII | CATG | 4 cut(s) | 143, 323, 533, 548 |
| NlaIV | GGNNCC | 1 cut(s) | 73 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| NsiI | ATGCAT | 1 cut(s) | 718 |
| PdmI | GAANNNNTTC | 1 cut(s) | 180 |
| PfeI | GAWTC | 3 cut(s) | 452, 526, 791 |
| PflFI | GACNNNGTC | 1 cut(s) | 537 |
| PspN4I | GGNNCC | 1 cut(s) | 73 |
| PstI | CTGCAG | 1 cut(s) | 712 |
| PsuI | RGATCY | 3 cut(s) | 391, 463, 763 |
| PsyI | GACNNNGTC | 1 cut(s) | 537 |
| RseI | CAYNNNNRTG | 1 cut(s) | 521 |
| SaqAI | TTAA | 7 cut(s) | 81, 108, 366, 396, 551, 644, 785 |
| Sau3AI | GATC | 4 cut(s) | 52, 391, 463, 763 |
| SduI | GDGCHC | 1 cut(s) | 74 |
| SetI | ASST | 7 cut(s) | 169, 277, 288, 430, 442, 620, 662 |
| SfaNI | GCATC | 3 cut(s) | 258, 703, 725 |
| SfcI | CTRYAG | 2 cut(s) | 708, 723 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 521 |
| SmlI | CTYRAG | 1 cut(s) | 692 |
| SmoI | CTYRAG | 1 cut(s) | 692 |
| Sse9I | AATT | 5 cut(s) | 237, 359, 447, 555, 728 |
| SsiI | CCGC | 3 cut(s) | 192, 230, 456 |
| SspI | AATATT | 1 cut(s) | 400 |
| SspMI | CTAG | 1 cut(s) | 272 |
| TaaI | ACNGT | 5 cut(s) | 8, 14, 79, 520, 783 |
| TaiI | ACGT | 2 cut(s) | 169, 662 |
| TaqI | TCGA | 1 cut(s) | 749 |
| TaqII | GACCGA | 1 cut(s) | 125 |
| TasI | AATT | 5 cut(s) | 237, 359, 447, 555, 728 |
| TfiI | GAWTC | 3 cut(s) | 452, 526, 791 |
| Tru1I | TTAA | 7 cut(s) | 81, 108, 366, 396, 551, 644, 785 |
| Tru9I | TTAA | 7 cut(s) | 81, 108, 366, 396, 551, 644, 785 |
| TscAI | CASTG | 2 cut(s) | 523, 786 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 2 cut(s) | 308, 518 |
| TspGWI | ACGGA | 1 cut(s) | 126 |
| TspRI | CASTG | 2 cut(s) | 523, 786 |
| Tth111I | GACNNNGTC | 1 cut(s) | 537 |
| XapI | RAATTY | 1 cut(s) | 237 |
| XmnI | GAANNNNTTC | 1 cut(s) | 180 |
| XspI | CTAG | 1 cut(s) | 272 |
| ZraI | GACGTC | 1 cut(s) | 660 |
| Zsp2I | ATGCAT | 1 cut(s) | 718 |