Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 27 - 89 | 1e-09 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 78, 361 |
| Acc36I | ACCTGC | 3 cut(s) | 78, 160, 361 |
| AciI | CCGC | 4 cut(s) | 82, 420, 633, 712 |
| AclWI | GGATC | 3 cut(s) | 188, 423, 436 |
| AfaI | GTAC | 1 cut(s) | 203 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 584 |
| AgsI | TTSAA | 3 cut(s) | 220, 465, 560 |
| AhlI | ACTAGT | 1 cut(s) | 485 |
| AjnI | CCWGG | 1 cut(s) | 549 |
| AleI | CACNNNNGTG | 1 cut(s) | 642 |
| AluBI | AGCT | 4 cut(s) | 130, 193, 667, 692 |
| AluI | AGCT | 4 cut(s) | 130, 193, 667, 692 |
| Alw21I | GWGCWC | 1 cut(s) | 669 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| AlwI | GGATC | 3 cut(s) | 188, 423, 436 |
| Ama87I | CYCGRG | 1 cut(s) | 255 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 487 |
| AspS9I | GGNCC | 2 cut(s) | 153, 276 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 3 cut(s) | 335, 539, 599 |
| AvaI | CYCGRG | 1 cut(s) | 255 |
| AvaII | GGWCC | 2 cut(s) | 153, 276 |
| BaeGI | GKGCMC | 1 cut(s) | 300 |
| BamHI | GGATCC | 1 cut(s) | 428 |
| BanII | GRGCYC | 2 cut(s) | 256, 669 |
| BbsI | GAAGAC | 1 cut(s) | 617 |
| Bbv12I | GWGCWC | 1 cut(s) | 669 |
| BbvI | GCAGC | 1 cut(s) | 62 |
| BccI | CCATC | 3 cut(s) | 26, 400, 617 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BciT130I | CCWGG | 1 cut(s) | 551 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BcuI | ACTAGT | 1 cut(s) | 485 |
| BfaI | CTAG | 2 cut(s) | 453, 486 |
| BfmI | CTRYAG | 2 cut(s) | 102, 162 |
| BfuAI | ACCTGC | 3 cut(s) | 78, 160, 361 |
| BisI | GCNGC | 2 cut(s) | 51, 712 |
| BlpI | GCTNAGC | 1 cut(s) | 668 |
| BlsI | GCNGC | 2 cut(s) | 52, 713 |
| Bme1390I | CCNGG | 2 cut(s) | 55, 551 |
| Bme18I | GGWCC | 2 cut(s) | 153, 276 |
| BmeT110I | CYCGRG | 1 cut(s) | 255 |
| BmgT120I | GGNCC | 2 cut(s) | 153, 276 |
| BmiI | GGNNCC | 4 cut(s) | 6, 155, 430, 710 |
| BmrFI | CCNGG | 2 cut(s) | 55, 551 |
| BpiI | GAAGAC | 1 cut(s) | 617 |
| BpmI | CTGGAG | 1 cut(s) | 173 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 668 |
| BpuEI | CTTGAG | 2 cut(s) | 107, 683 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaBI | GATNNNNATC | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 584 |
| Bse8I | GATNNNNATC | 1 cut(s) | 116 |
| BseBI | CCWGG | 1 cut(s) | 551 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 2 cut(s) | 37, 292 |
| BseJI | GATNNNNATC | 1 cut(s) | 116 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 584 |
| BseMII | CTCAG | 2 cut(s) | 483, 682 |
| BseRI | GAGGAG | 1 cut(s) | 552 |
| BseSI | GKGCMC | 1 cut(s) | 300 |
| BseXI | GCAGC | 1 cut(s) | 62 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| BsiHKAI | GWGCWC | 1 cut(s) | 669 |
| BsiHKCI | CYCGRG | 1 cut(s) | 255 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BslFI | GGGAC | 1 cut(s) | 139 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 584 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| BsmFI | GGGAC | 1 cut(s) | 139 |
| BsoBI | CYCGRG | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 3 cut(s) | 256, 300, 669 |
| Bsp143I | GATC | 6 cut(s) | 106, 180, 210, 308, 428, 544 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 668 |
| BspACI | CCGC | 4 cut(s) | 82, 420, 633, 712 |
| BspCNI | CTCAG | 2 cut(s) | 482, 681 |
| BspLI | GGNNCC | 4 cut(s) | 6, 155, 430, 710 |
| BspMI | ACCTGC | 3 cut(s) | 78, 160, 361 |
| BspPI | GGATC | 3 cut(s) | 188, 423, 436 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 6 cut(s) | 106, 180, 210, 308, 428, 544 |
| Bst2UI | CCWGG | 1 cut(s) | 551 |
| Bst4CI | ACNGT | 3 cut(s) | 416, 573, 641 |
| Bst6I | CTCTTC | 2 cut(s) | 266, 440 |
| BstDEI | CTNAG | 2 cut(s) | 469, 668 |
| BstF5I | GGATG | 2 cut(s) | 37, 292 |
| BstKTI | GATC | 6 cut(s) | 109, 183, 213, 311, 431, 547 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMBI | GATC | 6 cut(s) | 106, 180, 210, 308, 428, 544 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 374, 678 |
| BstNI | CCWGG | 1 cut(s) | 551 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 2 cut(s) | 53, 549 |
| BstSFI | CTRYAG | 2 cut(s) | 102, 162 |
| BstSLI | GKGCMC | 1 cut(s) | 300 |
| BstV1I | GCAGC | 1 cut(s) | 62 |
| BstV2I | GAAGAC | 1 cut(s) | 617 |
| BstX2I | RGATCY | 2 cut(s) | 180, 428 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 439 |
| BstYI | RGATCY | 2 cut(s) | 180, 428 |
| BtsCI | GGATG | 2 cut(s) | 37, 292 |
| BtsIMutI | CAGTG | 1 cut(s) | 569 |
| BveI | ACCTGC | 3 cut(s) | 78, 160, 361 |
| Cfr13I | GGNCC | 2 cut(s) | 153, 276 |
| Csp6I | GTAC | 1 cut(s) | 202 |
| CviAII | CATG | 9 cut(s) | 70, 293, 301, 433, 439, 505, 526, 584, 607 |
| CviQI | GTAC | 1 cut(s) | 202 |
| DdeI | CTNAG | 2 cut(s) | 469, 668 |
| DpnI | GATC | 6 cut(s) | 108, 182, 212, 310, 430, 546 |
| DpnII | GATC | 6 cut(s) | 106, 180, 210, 308, 428, 544 |
| Eam1104I | CTCTTC | 2 cut(s) | 266, 440 |
| EarI | CTCTTC | 2 cut(s) | 266, 440 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Ecl136II | GAGCTC | 1 cut(s) | 667 |
| Eco24I | GRGCYC | 2 cut(s) | 256, 669 |
| Eco47I | GGWCC | 2 cut(s) | 153, 276 |
| Eco53kI | GAGCTC | 1 cut(s) | 667 |
| Eco88I | CYCGRG | 1 cut(s) | 255 |
| EcoICRI | GAGCTC | 1 cut(s) | 667 |
| EcoO109I | RGGNCCY | 1 cut(s) | 153 |
| EcoRII | CCWGG | 1 cut(s) | 549 |
| EcoT38I | GRGCYC | 2 cut(s) | 256, 669 |
| FaeI | CATG | 9 cut(s) | 73, 296, 304, 436, 442, 508, 529, 587, 610 |
| FaqI | GGGAC | 1 cut(s) | 139 |
| FatI | CATG | 9 cut(s) | 69, 292, 300, 432, 438, 504, 525, 583, 606 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 712 |
| FokI | GGATG | 2 cut(s) | 44, 299 |
| FriOI | GRGCYC | 2 cut(s) | 256, 669 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 712 |
| FspBI | CTAG | 2 cut(s) | 453, 486 |
| GluI | GCNGC | 2 cut(s) | 51, 712 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 173 |
| HapII | CCGG | 1 cut(s) | 54 |
| Hin1II | CATG | 9 cut(s) | 73, 296, 304, 436, 442, 508, 529, 587, 610 |
| HinfI | GANTC | 2 cut(s) | 94, 117 |
| HpaII | CCGG | 1 cut(s) | 54 |
| HphI | GGTGA | 3 cut(s) | 335, 539, 599 |
| Hpy166II | GTNNAC | 3 cut(s) | 93, 244, 279 |
| Hpy188I | TCNGA | 4 cut(s) | 111, 177, 286, 622 |
| Hpy188III | TCNNGA | 4 cut(s) | 220, 241, 257, 706 |
| Hpy8I | GTNNAC | 3 cut(s) | 93, 244, 279 |
| HpyCH4III | ACNGT | 3 cut(s) | 416, 573, 641 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 3 cut(s) | 304, 350, 583 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 374, 678 |
| HpyF3I | CTNAG | 2 cut(s) | 469, 668 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92II | CATG | 9 cut(s) | 73, 296, 304, 436, 442, 508, 529, 587, 610 |
| Kzo9I | GATC | 6 cut(s) | 106, 180, 210, 308, 428, 544 |
| LmnI | GCTCC | 3 cut(s) | 84, 127, 708 |
| Lsp1109I | GCAGC | 1 cut(s) | 62 |
| MaeI | CTAG | 2 cut(s) | 453, 486 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MaeIII | GTNAC | 2 cut(s) | 334, 635 |
| MalI | GATC | 6 cut(s) | 108, 182, 212, 310, 430, 546 |
| MboI | GATC | 6 cut(s) | 106, 180, 210, 308, 428, 544 |
| MboII | GAAGA | 5 cut(s) | 280, 283, 457, 554, 622 |
| MflI | RGATCY | 2 cut(s) | 180, 428 |
| MhlI | GDGCHC | 3 cut(s) | 256, 300, 669 |
| MluCI | AATT | 1 cut(s) | 340 |
| MlyI | GAGTC | 1 cut(s) | 88 |
| MmeI | TCCRAC | 1 cut(s) | 454 |
| MroXI | GAANNNNTTC | 1 cut(s) | 487 |
| MseI | TTAA | 1 cut(s) | 396 |
| MslI | CAYNNNNRTG | 2 cut(s) | 437, 642 |
| MspA1I | CMGCKG | 2 cut(s) | 193, 714 |
| MspI | CCGG | 1 cut(s) | 54 |
| MspR9I | CCNGG | 2 cut(s) | 55, 551 |
| MvaI | CCWGG | 1 cut(s) | 551 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 374, 678 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NdeII | GATC | 6 cut(s) | 106, 180, 210, 308, 428, 544 |
| NlaIII | CATG | 9 cut(s) | 73, 296, 304, 436, 442, 508, 529, 587, 610 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 155, 430, 710 |
| NmuCI | GTSAC | 1 cut(s) | 635 |
| NspI | RCATGY | 1 cut(s) | 73 |
| OliI | CACNNNNGTG | 1 cut(s) | 642 |
| PaqCI | CACCTGC | 2 cut(s) | 78, 361 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PdmI | GAANNNNTTC | 1 cut(s) | 487 |
| PfeI | GAWTC | 1 cut(s) | 117 |
| PkrI | GCNGC | 2 cut(s) | 52, 713 |
| PleI | GAGTC | 1 cut(s) | 88 |
| PpsI | GAGTC | 1 cut(s) | 88 |
| PpuMI | RGGWCCY | 1 cut(s) | 153 |
| Psp124BI | GAGCTC | 1 cut(s) | 669 |
| Psp5II | RGGWCCY | 1 cut(s) | 153 |
| Psp6I | CCWGG | 1 cut(s) | 549 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 549 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 155, 430, 710 |
| PspPI | GGNCC | 2 cut(s) | 153, 276 |
| PspPPI | RGGWCCY | 1 cut(s) | 153 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 475, 507 |
| PsuI | RGATCY | 2 cut(s) | 180, 428 |
| PvuII | CAGCTG | 1 cut(s) | 193 |
| RsaI | GTAC | 1 cut(s) | 203 |
| RsaNI | GTAC | 1 cut(s) | 202 |
| RseI | CAYNNNNRTG | 2 cut(s) | 437, 642 |
| SacI | GAGCTC | 1 cut(s) | 669 |
| SaqAI | TTAA | 1 cut(s) | 396 |
| SatI | GCNGC | 2 cut(s) | 51, 712 |
| Sau3AI | GATC | 6 cut(s) | 106, 180, 210, 308, 428, 544 |
| Sau96I | GGNCC | 2 cut(s) | 153, 276 |
| SchI | GAGTC | 1 cut(s) | 88 |
| ScrFI | CCNGG | 2 cut(s) | 55, 551 |
| SduI | GDGCHC | 3 cut(s) | 256, 300, 669 |
| SfcI | CTRYAG | 2 cut(s) | 102, 162 |
| SinI | GGWCC | 2 cut(s) | 153, 276 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 437, 642 |
| SmlI | CTYRAG | 2 cut(s) | 122, 662 |
| SmoI | CTYRAG | 2 cut(s) | 122, 662 |
| SpeI | ACTAGT | 1 cut(s) | 485 |
| Sse9I | AATT | 1 cut(s) | 340 |
| SsiI | CCGC | 4 cut(s) | 82, 420, 633, 712 |
| SspMI | CTAG | 2 cut(s) | 453, 486 |
| SstI | GAGCTC | 1 cut(s) | 669 |
| StyD4I | CCNGG | 2 cut(s) | 53, 549 |
| TaaI | ACNGT | 3 cut(s) | 416, 573, 641 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 1 cut(s) | 213 |
| TasI | AATT | 1 cut(s) | 340 |
| TauI | GCSGC | 1 cut(s) | 714 |
| TfiI | GAWTC | 1 cut(s) | 117 |
| Tru1I | TTAA | 1 cut(s) | 396 |
| Tru9I | TTAA | 1 cut(s) | 396 |
| TscAI | CASTG | 1 cut(s) | 576 |
| TseFI | GTSAC | 1 cut(s) | 635 |
| TseI | GCWGC | 1 cut(s) | 50 |
| Tsp45I | GTSAC | 1 cut(s) | 635 |
| TspDTI | ATGAA | 6 cut(s) | 281, 333, 449, 514, 521, 623 |
| TspRI | CASTG | 1 cut(s) | 576 |
| VpaK11BI | GGWCC | 2 cut(s) | 153, 276 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 487 |
| XspI | CTAG | 2 cut(s) | 453, 486 |