Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 78 - 127 | 1.4e-06 | PPR repeat family |
| PPR_1 | PF12854 | 144 - 177 | 7.4e-10 | PPR repeat |
| PPR_2 | PF13041 | 148 - 197 | 9.6e-12 | PPR repeat family |
| PPR_3 | PF13812 | 173 - 231 | 1.7e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 183 - 213 | 6.6e-08 | PPR repeat |
| PPR_2 | PF13041 | 186 - 219 | 1.8e-07 | PPR repeat family |
| PPR_2 | PF13041 | 221 - 270 | 1.7e-14 | PPR repeat family |
| PPR_3 | PF13812 | 245 - 300 | 3.2e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 252 - 284 | 5.7e-11 | PPR repeat |
| PPR_2 | PF13041 | 257 - 305 | 8.3e-18 | PPR repeat family |
| PPR | PF01535 | 259 - 289 | 4.5e-08 | PPR repeat |
| MRP-S27 | PF10037 | 260 - 335 | 4.3e-08 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 287 - 319 | 2.7e-08 | PPR repeat |
| PPR_2 | PF13041 | 291 - 331 | 9.2e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 450 |
| Acc36I | ACCTGC | 1 cut(s) | 527 |
| AciI | CCGC | 1 cut(s) | 611 |
| AclI | AACGTT | 1 cut(s) | 1001 |
| AclWI | GGATC | 2 cut(s) | 1003, 1025 |
| AcyI | GRCGYC | 1 cut(s) | 447 |
| AfaI | GTAC | 3 cut(s) | 9, 349, 879 |
| AluBI | AGCT | 3 cut(s) | 159, 402, 830 |
| AluI | AGCT | 3 cut(s) | 159, 402, 830 |
| AlwI | GGATC | 2 cut(s) | 1003, 1025 |
| AoxI | GGCC | 2 cut(s) | 672, 814 |
| AseI | ATTAAT | 1 cut(s) | 366 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 200, 213, 734 |
| AsuC2I | CCSGG | 1 cut(s) | 58 |
| AsuHPI | GGTGA | 1 cut(s) | 106 |
| BbsI | GAAGAC | 1 cut(s) | 428 |
| BccI | CCATC | 5 cut(s) | 310, 589, 628, 692, 916 |
| BceAI | ACGGC | 1 cut(s) | 490 |
| BciVI | GTATCC | 1 cut(s) | 700 |
| BcnI | CCSGG | 1 cut(s) | 58 |
| BfaI | CTAG | 2 cut(s) | 156, 1023 |
| BfmI | CTRYAG | 1 cut(s) | 676 |
| BfuAI | ACCTGC | 1 cut(s) | 527 |
| BfuI | GTATCC | 1 cut(s) | 700 |
| BisI | GCNGC | 1 cut(s) | 612 |
| BlpI | GCTNAGC | 1 cut(s) | 972 |
| BlsI | GCNGC | 1 cut(s) | 613 |
| Bme1390I | CCNGG | 1 cut(s) | 58 |
| BmrFI | CCNGG | 1 cut(s) | 58 |
| BmrI | ACTGGG | 1 cut(s) | 104 |
| BmsI | GCATC | 2 cut(s) | 638, 712 |
| BmuI | ACTGGG | 1 cut(s) | 104 |
| BpiI | GAAGAC | 1 cut(s) | 428 |
| Bpu10I | CCTNAGC | 1 cut(s) | 657 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 972 |
| BpuMI | CCSGG | 1 cut(s) | 58 |
| BsaHI | GRCGYC | 1 cut(s) | 447 |
| BsaJI | CCNNGG | 1 cut(s) | 1012 |
| BsaWI | WCCGGW | 2 cut(s) | 326, 442 |
| Bse1I | ACTGG | 2 cut(s) | 99, 817 |
| Bse3DI | GCAATG | 2 cut(s) | 732, 814 |
| BseDI | CCNNGG | 1 cut(s) | 1012 |
| BseGI | GGATG | 3 cut(s) | 193, 653, 927 |
| BseMI | GCAATG | 2 cut(s) | 732, 814 |
| BseMII | CTCAG | 3 cut(s) | 27, 648, 963 |
| BseNI | ACTGG | 2 cut(s) | 99, 817 |
| BsgI | GTGCAG | 1 cut(s) | 436 |
| BshFI | GGCC | 2 cut(s) | 674, 816 |
| BsiSI | CCGG | 3 cut(s) | 57, 327, 443 |
| BslFI | GGGAC | 2 cut(s) | 227, 429 |
| BsmFI | GGGAC | 2 cut(s) | 227, 429 |
| BsnI | GGCC | 2 cut(s) | 674, 816 |
| Bsp143I | GATC | 3 cut(s) | 40, 1008, 1017 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 972 |
| BspACI | CCGC | 1 cut(s) | 611 |
| BspANI | GGCC | 2 cut(s) | 674, 816 |
| BspCNI | CTCAG | 3 cut(s) | 26, 649, 964 |
| BspMI | ACCTGC | 1 cut(s) | 527 |
| BspPI | GGATC | 2 cut(s) | 1003, 1025 |
| BsrDI | GCAATG | 2 cut(s) | 732, 814 |
| BsrI | ACTGG | 2 cut(s) | 99, 817 |
| BssECI | CCNNGG | 1 cut(s) | 1012 |
| BssMI | GATC | 3 cut(s) | 40, 1008, 1017 |
| BssNI | GRCGYC | 1 cut(s) | 447 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 84, 130, 295, 695 |
| BstACI | GRCGYC | 1 cut(s) | 447 |
| BstC8I | GCNNGC | 1 cut(s) | 653 |
| BstDEI | CTNAG | 5 cut(s) | 13, 657, 739, 854, 972 |
| BstDSI | CCRYGG | 1 cut(s) | 1012 |
| BstF5I | GGATG | 3 cut(s) | 193, 653, 927 |
| BstKTI | GATC | 3 cut(s) | 43, 1011, 1020 |
| BstMBI | GATC | 3 cut(s) | 40, 1008, 1017 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 813 |
| BstSCI | CCNGG | 1 cut(s) | 56 |
| BstSFI | CTRYAG | 1 cut(s) | 676 |
| BstV2I | GAAGAC | 1 cut(s) | 428 |
| BstX2I | RGATCY | 1 cut(s) | 1017 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 943 |
| BstYI | RGATCY | 1 cut(s) | 1017 |
| BsuI | GTATCC | 1 cut(s) | 700 |
| BsuRI | GGCC | 2 cut(s) | 674, 816 |
| BtgI | CCRYGG | 1 cut(s) | 1012 |
| BtsCI | GGATG | 3 cut(s) | 193, 653, 927 |
| BtsI | GCAGTG | 1 cut(s) | 606 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 606, 824 |
| BveI | ACCTGC | 1 cut(s) | 527 |
| Cac8I | GCNNGC | 1 cut(s) | 653 |
| Csp6I | GTAC | 3 cut(s) | 8, 348, 878 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 510, 545 |
| CviAII | CATG | 2 cut(s) | 206, 592 |
| CviQI | GTAC | 3 cut(s) | 8, 348, 878 |
| DdeI | CTNAG | 5 cut(s) | 13, 657, 739, 854, 972 |
| DpnI | GATC | 3 cut(s) | 42, 1010, 1019 |
| DpnII | GATC | 3 cut(s) | 40, 1008, 1017 |
| DraI | TTTAAA | 1 cut(s) | 384 |
| Eco32I | GATATC | 1 cut(s) | 112 |
| EcoRV | GATATC | 1 cut(s) | 112 |
| FaeI | CATG | 2 cut(s) | 209, 595 |
| FaiI | YATR | 8 cut(s) | 27, 207, 593, 617, 717, 991, 993, 995 |
| FaqI | GGGAC | 2 cut(s) | 227, 429 |
| FatI | CATG | 2 cut(s) | 205, 591 |
| Fnu4HI | GCNGC | 1 cut(s) | 612 |
| FokI | GGATG | 3 cut(s) | 200, 660, 934 |
| Fsp4HI | GCNGC | 1 cut(s) | 612 |
| FspBI | CTAG | 2 cut(s) | 156, 1023 |
| GluI | GCNGC | 1 cut(s) | 612 |
| HaeIII | GGCC | 2 cut(s) | 674, 816 |
| HapII | CCGG | 3 cut(s) | 57, 327, 443 |
| Hin1I | GRCGYC | 1 cut(s) | 447 |
| Hin1II | CATG | 2 cut(s) | 209, 595 |
| HincII | GTYRAC | 1 cut(s) | 999 |
| HindII | GTYRAC | 1 cut(s) | 999 |
| HinfI | GANTC | 3 cut(s) | 262, 793, 958 |
| HpaI | GTTAAC | 1 cut(s) | 999 |
| HpaII | CCGG | 3 cut(s) | 57, 327, 443 |
| HphI | GGTGA | 1 cut(s) | 106 |
| Hpy166II | GTNNAC | 1 cut(s) | 999 |
| Hpy188I | TCNGA | 2 cut(s) | 275, 324 |
| Hpy188III | TCNNGA | 4 cut(s) | 193, 259, 338, 485 |
| Hpy8I | GTNNAC | 1 cut(s) | 999 |
| HpyAV | CCTTC | 5 cut(s) | 243, 466, 697, 895, 911 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 84, 130, 295, 695 |
| HpyCH4IV | ACGT | 4 cut(s) | 447, 666, 771, 1001 |
| HpyCH4V | TGCA | 6 cut(s) | 453, 591, 619, 725, 767, 807 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 813 |
| HpyF3I | CTNAG | 5 cut(s) | 13, 657, 739, 854, 972 |
| HpySE526I | ACGT | 4 cut(s) | 447, 666, 771, 1001 |
| Hsp92I | GRCGYC | 1 cut(s) | 447 |
| Hsp92II | CATG | 2 cut(s) | 209, 595 |
| KspAI | GTTAAC | 1 cut(s) | 999 |
| Kzo9I | GATC | 3 cut(s) | 40, 1008, 1017 |
| LmnI | GCTCC | 1 cut(s) | 340 |
| LweI | GCATC | 2 cut(s) | 638, 712 |
| MaeI | CTAG | 2 cut(s) | 156, 1023 |
| MaeII | ACGT | 4 cut(s) | 447, 666, 771, 1001 |
| MaeIII | GTNAC | 2 cut(s) | 559, 775 |
| MalI | GATC | 3 cut(s) | 42, 1010, 1019 |
| MboI | GATC | 3 cut(s) | 40, 1008, 1017 |
| MboII | GAAGA | 6 cut(s) | 79, 137, 415, 428, 650, 859 |
| MflI | RGATCY | 1 cut(s) | 1017 |
| MluCI | AATT | 6 cut(s) | 330, 367, 390, 419, 620, 979 |
| MlyI | GAGTC | 1 cut(s) | 256 |
| MnlI | CCTC | 7 cut(s) | 178, 237, 496, 526, 638, 749, 959 |
| MroXI | GAANNNNTTC | 3 cut(s) | 200, 213, 734 |
| MseI | TTAA | 5 cut(s) | 366, 383, 546, 998, 1027 |
| MslI | CAYNNNNRTG | 1 cut(s) | 524 |
| MspI | CCGG | 3 cut(s) | 57, 327, 443 |
| MspR9I | CCNGG | 1 cut(s) | 58 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 813 |
| NciI | CCSGG | 1 cut(s) | 58 |
| NdeII | GATC | 3 cut(s) | 40, 1008, 1017 |
| NlaIII | CATG | 2 cut(s) | 209, 595 |
| PdmI | GAANNNNTTC | 3 cut(s) | 200, 213, 734 |
| PfeI | GAWTC | 2 cut(s) | 793, 958 |
| PkrI | GCNGC | 1 cut(s) | 613 |
| PleI | GAGTC | 1 cut(s) | 256 |
| PpsI | GAGTC | 1 cut(s) | 256 |
| PshBI | ATTAAT | 1 cut(s) | 366 |
| Psp1406I | AACGTT | 1 cut(s) | 1001 |
| PsuI | RGATCY | 1 cut(s) | 1017 |
| RsaI | GTAC | 3 cut(s) | 9, 349, 879 |
| RsaNI | GTAC | 3 cut(s) | 8, 348, 878 |
| RseI | CAYNNNNRTG | 1 cut(s) | 524 |
| SaqAI | TTAA | 5 cut(s) | 366, 383, 546, 998, 1027 |
| SatI | GCNGC | 1 cut(s) | 612 |
| Sau3AI | GATC | 3 cut(s) | 40, 1008, 1017 |
| SchI | GAGTC | 1 cut(s) | 256 |
| ScrFI | CCNGG | 1 cut(s) | 58 |
| SfaNI | GCATC | 2 cut(s) | 638, 712 |
| SfcI | CTRYAG | 1 cut(s) | 676 |
| SmiI | ATTTAAAT | 1 cut(s) | 384 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 524 |
| Sse9I | AATT | 6 cut(s) | 330, 367, 390, 419, 620, 979 |
| SsiI | CCGC | 1 cut(s) | 611 |
| SspMI | CTAG | 2 cut(s) | 156, 1023 |
| StyD4I | CCNGG | 1 cut(s) | 56 |
| SwaI | ATTTAAAT | 1 cut(s) | 384 |
| TaaI | ACNGT | 5 cut(s) | 37, 84, 130, 295, 695 |
| TaiI | ACGT | 4 cut(s) | 450, 669, 774, 1004 |
| TaqI | TCGA | 1 cut(s) | 39 |
| TasI | AATT | 6 cut(s) | 330, 367, 390, 419, 620, 979 |
| TatI | WGTACW | 2 cut(s) | 7, 347 |
| TauI | GCSGC | 1 cut(s) | 614 |
| TfiI | GAWTC | 2 cut(s) | 793, 958 |
| Tru1I | TTAA | 5 cut(s) | 366, 383, 546, 998, 1027 |
| Tru9I | TTAA | 5 cut(s) | 366, 383, 546, 998, 1027 |
| TscAI | CASTG | 3 cut(s) | 133, 613, 824 |
| TspDTI | ATGAA | 2 cut(s) | 222, 743 |
| TspGWI | ACGGA | 2 cut(s) | 813, 1001 |
| TspRI | CASTG | 3 cut(s) | 133, 613, 824 |
| VspI | ATTAAT | 1 cut(s) | 366 |
| XmnI | GAANNNNTTC | 3 cut(s) | 200, 213, 734 |
| XspI | CTAG | 2 cut(s) | 156, 1023 |
| ZraI | GACGTC | 1 cut(s) | 448 |