PPR repeat
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 289 |
| AciI | CCGC | 2 cut(s) | 488, 549 |
| AclWI | GGATC | 1 cut(s) | 43 |
| AcsI | RAATTY | 1 cut(s) | 420 |
| AfaI | GTAC | 2 cut(s) | 378, 463 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 245 |
| AgsI | TTSAA | 3 cut(s) | 74, 289, 564 |
| AluBI | AGCT | 3 cut(s) | 28, 168, 252 |
| AluI | AGCT | 3 cut(s) | 28, 168, 252 |
| Alw26I | GTCTC | 1 cut(s) | 61 |
| AlwI | GGATC | 1 cut(s) | 43 |
| AoxI | GGCC | 2 cut(s) | 399, 538 |
| ApeKI | GCWGC | 2 cut(s) | 135, 342 |
| ApoI | RAATTY | 1 cut(s) | 420 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 438 |
| AspLEI | GCGC | 1 cut(s) | 102 |
| AsuC2I | CCSGG | 1 cut(s) | 407 |
| BaeGI | GKGCMC | 1 cut(s) | 261 |
| BbsI | GAAGAC | 3 cut(s) | 81, 102, 221 |
| BbvI | GCAGC | 2 cut(s) | 147, 329 |
| BccI | CCATC | 2 cut(s) | 160, 248 |
| BclI | TGATCA | 1 cut(s) | 394 |
| BcnI | CCSGG | 1 cut(s) | 407 |
| BcoDI | GTCTC | 1 cut(s) | 61 |
| BfaI | CTAG | 1 cut(s) | 165 |
| BfmI | CTRYAG | 1 cut(s) | 542 |
| BfuAI | ACCTGC | 1 cut(s) | 289 |
| BglII | AGATCT | 1 cut(s) | 557 |
| BisI | GCNGC | 2 cut(s) | 136, 343 |
| BlpI | GCTNAGC | 1 cut(s) | 332 |
| BlsI | GCNGC | 2 cut(s) | 137, 344 |
| Bme1390I | CCNGG | 1 cut(s) | 407 |
| BmrFI | CCNGG | 1 cut(s) | 407 |
| BmsI | GCATC | 3 cut(s) | 87, 318, 516 |
| BpiI | GAAGAC | 3 cut(s) | 81, 102, 221 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 332 |
| BpuMI | CCSGG | 1 cut(s) | 407 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 245 |
| Bse1I | ACTGG | 1 cut(s) | 47 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BseNI | ACTGG | 1 cut(s) | 47 |
| BseSI | GKGCMC | 1 cut(s) | 261 |
| BseXI | GCAGC | 2 cut(s) | 147, 329 |
| BseYI | CCCAGC | 1 cut(s) | 219 |
| BshFI | GGCC | 2 cut(s) | 401, 540 |
| BsiSI | CCGG | 1 cut(s) | 406 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BsmAI | GTCTC | 1 cut(s) | 61 |
| BsnI | GGCC | 2 cut(s) | 401, 540 |
| Bsp1286I | GDGCHC | 1 cut(s) | 261 |
| Bsp143I | GATC | 5 cut(s) | 35, 81, 322, 394, 557 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 332 |
| BspACI | CCGC | 2 cut(s) | 488, 549 |
| BspANI | GGCC | 2 cut(s) | 401, 540 |
| BspMI | ACCTGC | 1 cut(s) | 289 |
| BspPI | GGATC | 1 cut(s) | 43 |
| BsrI | ACTGG | 1 cut(s) | 47 |
| BssMI | GATC | 5 cut(s) | 35, 81, 322, 394, 557 |
| Bst4CI | ACNGT | 3 cut(s) | 376, 461, 476 |
| Bst6I | CTCTTC | 1 cut(s) | 162 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 342 |
| BstC8I | GCNNGC | 1 cut(s) | 549 |
| BstDEI | CTNAG | 1 cut(s) | 332 |
| BstHHI | GCGC | 1 cut(s) | 102 |
| BstKTI | GATC | 5 cut(s) | 38, 84, 325, 397, 560 |
| BstMAI | GTCTC | 1 cut(s) | 61 |
| BstMBI | GATC | 5 cut(s) | 35, 81, 322, 394, 557 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 342 |
| BstSCI | CCNGG | 1 cut(s) | 405 |
| BstSFI | CTRYAG | 1 cut(s) | 542 |
| BstSLI | GKGCMC | 1 cut(s) | 261 |
| BstV1I | GCAGC | 2 cut(s) | 147, 329 |
| BstV2I | GAAGAC | 3 cut(s) | 81, 102, 221 |
| BstX2I | RGATCY | 1 cut(s) | 557 |
| BstYI | RGATCY | 1 cut(s) | 557 |
| BsuRI | GGCC | 2 cut(s) | 401, 540 |
| BveI | ACCTGC | 1 cut(s) | 289 |
| Cac8I | GCNNGC | 1 cut(s) | 549 |
| CfoI | GCGC | 1 cut(s) | 102 |
| Csp6I | GTAC | 2 cut(s) | 377, 462 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 161, 196 |
| CviAII | CATG | 3 cut(s) | 200, 337, 346 |
| CviJI | RGCY | 7 cut(s) | 28, 168, 252, 342, 401, 540, 547 |
| CviKI_1 | RGCY | 7 cut(s) | 28, 168, 252, 342, 401, 540, 547 |
| CviQI | GTAC | 2 cut(s) | 377, 462 |
| DdeI | CTNAG | 1 cut(s) | 332 |
| DpnI | GATC | 5 cut(s) | 37, 83, 324, 396, 559 |
| DpnII | GATC | 5 cut(s) | 35, 81, 322, 394, 557 |
| Eam1104I | CTCTTC | 1 cut(s) | 162 |
| EarI | CTCTTC | 1 cut(s) | 162 |
| FaeI | CATG | 3 cut(s) | 203, 340, 349 |
| FaiI | YATR | 5 cut(s) | 201, 338, 347, 571, 586 |
| FatI | CATG | 3 cut(s) | 199, 336, 345 |
| FauI | CCCGC | 2 cut(s) | 481, 556 |
| FbaI | TGATCA | 1 cut(s) | 394 |
| Fnu4HI | GCNGC | 2 cut(s) | 136, 343 |
| Fsp4HI | GCNGC | 2 cut(s) | 136, 343 |
| FspBI | CTAG | 1 cut(s) | 165 |
| GlaI | GCGC | 1 cut(s) | 101 |
| GluI | GCNGC | 2 cut(s) | 136, 343 |
| GsaI | CCCAGC | 1 cut(s) | 223 |
| HaeIII | GGCC | 2 cut(s) | 401, 540 |
| HapII | CCGG | 1 cut(s) | 406 |
| HhaI | GCGC | 1 cut(s) | 102 |
| Hin1II | CATG | 3 cut(s) | 203, 340, 349 |
| Hin6I | GCGC | 1 cut(s) | 100 |
| HinP1I | GCGC | 1 cut(s) | 100 |
| HpaII | CCGG | 1 cut(s) | 406 |
| Hpy188I | TCNGA | 3 cut(s) | 269, 327, 525 |
| Hpy188III | TCNNGA | 3 cut(s) | 230, 443, 555 |
| HpyCH4III | ACNGT | 3 cut(s) | 376, 461, 476 |
| HpyCH4IV | ACGT | 1 cut(s) | 107 |
| HpyCH4V | TGCA | 2 cut(s) | 345, 529 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 342 |
| HpyF3I | CTNAG | 1 cut(s) | 332 |
| HpySE526I | ACGT | 1 cut(s) | 107 |
| Hsp92II | CATG | 3 cut(s) | 203, 340, 349 |
| HspAI | GCGC | 1 cut(s) | 100 |
| Ksp22I | TGATCA | 1 cut(s) | 394 |
| Kzo9I | GATC | 5 cut(s) | 35, 81, 322, 394, 557 |
| Lsp1109I | GCAGC | 2 cut(s) | 147, 329 |
| LweI | GCATC | 3 cut(s) | 87, 318, 516 |
| MaeI | CTAG | 1 cut(s) | 165 |
| MaeII | ACGT | 1 cut(s) | 107 |
| MaeIII | GTNAC | 1 cut(s) | 365 |
| MalI | GATC | 5 cut(s) | 37, 83, 324, 396, 559 |
| MboI | GATC | 5 cut(s) | 35, 81, 322, 394, 557 |
| MboII | GAAGA | 9 cut(s) | 86, 102, 105, 149, 220, 223, 226, 416, 552 |
| MflI | RGATCY | 1 cut(s) | 557 |
| MhlI | GDGCHC | 1 cut(s) | 261 |
| MluCI | AATT | 2 cut(s) | 194, 420 |
| MnlI | CCTC | 1 cut(s) | 238 |
| MroXI | GAANNNNTTC | 1 cut(s) | 438 |
| MspI | CCGG | 1 cut(s) | 406 |
| MspR9I | CCNGG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 342 |
| NciI | CCSGG | 1 cut(s) | 407 |
| NdeII | GATC | 5 cut(s) | 35, 81, 322, 394, 557 |
| NlaIII | CATG | 3 cut(s) | 203, 340, 349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 438 |
| PkrI | GCNGC | 2 cut(s) | 137, 344 |
| PspFI | CCCAGC | 1 cut(s) | 219 |
| PsuI | RGATCY | 1 cut(s) | 557 |
| RsaI | GTAC | 2 cut(s) | 378, 463 |
| RsaNI | GTAC | 2 cut(s) | 377, 462 |
| SatI | GCNGC | 2 cut(s) | 136, 343 |
| Sau3AI | GATC | 5 cut(s) | 35, 81, 322, 394, 557 |
| ScrFI | CCNGG | 1 cut(s) | 407 |
| SduI | GDGCHC | 1 cut(s) | 261 |
| SetI | ASST | 7 cut(s) | 30, 110, 170, 254, 283, 504, 535 |
| SfaNI | GCATC | 3 cut(s) | 87, 318, 516 |
| SfcI | CTRYAG | 1 cut(s) | 542 |
| Sse9I | AATT | 2 cut(s) | 194, 420 |
| SsiI | CCGC | 2 cut(s) | 488, 549 |
| SspMI | CTAG | 1 cut(s) | 165 |
| StyD4I | CCNGG | 1 cut(s) | 405 |
| TaaI | ACNGT | 3 cut(s) | 376, 461, 476 |
| TaiI | ACGT | 1 cut(s) | 110 |
| TaqI | TCGA | 4 cut(s) | 243, 276, 351, 444 |
| TasI | AATT | 2 cut(s) | 194, 420 |
| TseI | GCWGC | 2 cut(s) | 135, 342 |
| TspDTI | ATGAA | 2 cut(s) | 17, 176 |
| XapI | RAATTY | 1 cut(s) | 420 |
| XmnI | GAANNNNTTC | 1 cut(s) | 438 |
| XspI | CTAG | 1 cut(s) | 165 |