pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 151 - 200 | 2.5e-08 | PPR repeat family |
| PPR_3 | PF13812 | 181 - 232 | 2.1e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 186 - 216 | 2.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 187 - 236 | 5.6e-12 | PPR repeat family |
| PPR_long | PF17177 | 203 - 328 | 1.7e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 219 - 251 | 1.7e-11 | PPR repeat |
| PPR_2 | PF13041 | 222 - 271 | 2.5e-15 | PPR repeat family |
| PPR_3 | PF13812 | 246 - 304 | 2.6e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 253 - 286 | 3.8e-10 | PPR repeat |
| PPR_2 | PF13041 | 258 - 306 | 1.1e-17 | PPR repeat family |
| PPR | PF01535 | 260 - 290 | 4.5e-08 | PPR repeat |
| MRP-S27 | PF10037 | 261 - 324 | 1.8e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 288 - 320 | 8e-09 | PPR repeat |
| PPR_2 | PF13041 | 292 - 331 | 1.5e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 786 |
| Acc16I | TGCGCA | 1 cut(s) | 884 |
| AciI | CCGC | 4 cut(s) | 7, 40, 65, 253 |
| AclWI | GGATC | 1 cut(s) | 922 |
| AcsI | RAATTY | 2 cut(s) | 339, 428 |
| AcyI | GRCGYC | 1 cut(s) | 232 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 459 |
| AflII | CTTAAG | 1 cut(s) | 635 |
| AhlI | ACTAGT | 1 cut(s) | 583 |
| AjnI | CCWGG | 1 cut(s) | 346 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 725, 757 |
| AluBI | AGCT | 2 cut(s) | 131, 623 |
| AluI | AGCT | 2 cut(s) | 131, 623 |
| AlwI | GGATC | 1 cut(s) | 922 |
| Ama87I | CYCGRG | 1 cut(s) | 126 |
| ApeKI | GCWGC | 2 cut(s) | 23, 36 |
| ApoI | RAATTY | 2 cut(s) | 339, 428 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 222, 737 |
| AspLEI | GCGC | 1 cut(s) | 885 |
| AsuHPI | GGTGA | 1 cut(s) | 868 |
| AvaI | CYCGRG | 1 cut(s) | 126 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 52, 84 |
| BbvI | GCAGC | 2 cut(s) | 10, 48 |
| BccI | CCATC | 3 cut(s) | 476, 532, 637 |
| BceAI | ACGGC | 1 cut(s) | 49 |
| BciT130I | CCWGG | 1 cut(s) | 348 |
| BciVI | GTATCC | 1 cut(s) | 703 |
| BcuI | ACTAGT | 1 cut(s) | 583 |
| BfaI | CTAG | 1 cut(s) | 584 |
| BfrI | CTTAAG | 1 cut(s) | 635 |
| BfuI | GTATCC | 1 cut(s) | 703 |
| BisI | GCNGC | 4 cut(s) | 24, 37, 40, 65 |
| BlsI | GCNGC | 4 cut(s) | 25, 38, 41, 66 |
| Bme1390I | CCNGG | 1 cut(s) | 348 |
| BmeT110I | CYCGRG | 1 cut(s) | 126 |
| BmrFI | CCNGG | 1 cut(s) | 348 |
| BmrI | ACTGGG | 1 cut(s) | 163 |
| BmsI | GCATC | 2 cut(s) | 502, 715 |
| BmuI | ACTGGG | 1 cut(s) | 163 |
| BpuEI | CTTGAG | 3 cut(s) | 212, 515, 753 |
| Bsa29I | ATCGAT | 1 cut(s) | 480 |
| BsaHI | GRCGYC | 1 cut(s) | 232 |
| BsaJI | CCNNGG | 1 cut(s) | 300 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 725, 755 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 459 |
| Bse1I | ACTGG | 2 cut(s) | 169, 557 |
| BseBI | CCWGG | 1 cut(s) | 348 |
| BseCI | ATCGAT | 1 cut(s) | 480 |
| BseDI | CCNNGG | 1 cut(s) | 300 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 459 |
| BseMII | CTCAG | 2 cut(s) | 61, 217 |
| BseNI | ACTGG | 2 cut(s) | 169, 557 |
| BseXI | GCAGC | 2 cut(s) | 10, 48 |
| BshVI | ATCGAT | 1 cut(s) | 480 |
| BsiHKCI | CYCGRG | 1 cut(s) | 126 |
| BslFI | GGGAC | 1 cut(s) | 606 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 459 |
| BsmFI | GGGAC | 1 cut(s) | 606 |
| BsmI | GAATGC | 1 cut(s) | 202 |
| BsoBI | CYCGRG | 1 cut(s) | 126 |
| Bsp143I | GATC | 2 cut(s) | 687, 927 |
| BspACI | CCGC | 4 cut(s) | 7, 40, 65, 253 |
| BspCNI | CTCAG | 2 cut(s) | 60, 216 |
| BspDI | ATCGAT | 1 cut(s) | 480 |
| BspPI | GGATC | 1 cut(s) | 922 |
| BspTI | CTTAAG | 1 cut(s) | 635 |
| BsrI | ACTGG | 2 cut(s) | 169, 557 |
| BssECI | CCNNGG | 1 cut(s) | 300 |
| BssMI | GATC | 2 cut(s) | 687, 927 |
| BssNI | GRCGYC | 1 cut(s) | 232 |
| Bst2UI | CCWGG | 1 cut(s) | 348 |
| Bst4CI | ACNGT | 7 cut(s) | 304, 475, 565, 698, 791, 910, 988 |
| Bst6I | CTCTTC | 3 cut(s) | 78, 85, 743 |
| BstACI | GRCGYC | 1 cut(s) | 232 |
| BstAFI | CTTAAG | 1 cut(s) | 635 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 1 cut(s) | 662 |
| BstDEI | CTNAG | 2 cut(s) | 47, 203 |
| BstDSI | CCRYGG | 1 cut(s) | 300 |
| BstHHI | GCGC | 1 cut(s) | 885 |
| BstKTI | GATC | 2 cut(s) | 690, 930 |
| BstMBI | GATC | 2 cut(s) | 687, 927 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 20, 229, 238 |
| BstNI | CCWGG | 1 cut(s) | 348 |
| BstSCI | CCNGG | 1 cut(s) | 346 |
| BstV1I | GCAGC | 2 cut(s) | 10, 48 |
| Bsu15I | ATCGAT | 1 cut(s) | 480 |
| BsuI | GTATCC | 1 cut(s) | 703 |
| BsuTUI | ATCGAT | 1 cut(s) | 480 |
| BtgI | CCRYGG | 1 cut(s) | 300 |
| BtsIMutI | CAGTG | 3 cut(s) | 211, 471, 561 |
| Cac8I | GCNNGC | 1 cut(s) | 662 |
| CfoI | GCGC | 1 cut(s) | 885 |
| ClaI | ATCGAT | 1 cut(s) | 480 |
| CseI | GACGC | 1 cut(s) | 221 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 927, 962 |
| CviAII | CATG | 2 cut(s) | 601, 800 |
| CviJI | RGCY | 8 cut(s) | 39, 53, 131, 486, 509, 559, 623, 664 |
| CviKI_1 | RGCY | 8 cut(s) | 39, 53, 131, 486, 509, 559, 623, 664 |
| DdeI | CTNAG | 2 cut(s) | 47, 203 |
| DpnI | GATC | 2 cut(s) | 689, 929 |
| DpnII | GATC | 2 cut(s) | 687, 927 |
| Eam1104I | CTCTTC | 3 cut(s) | 78, 85, 743 |
| EarI | CTCTTC | 3 cut(s) | 78, 85, 743 |
| Eco88I | CYCGRG | 1 cut(s) | 126 |
| EcoRI | GAATTC | 1 cut(s) | 339 |
| EcoRII | CCWGG | 1 cut(s) | 346 |
| EcoT22I | ATGCAT | 1 cut(s) | 730 |
| FaeI | CATG | 2 cut(s) | 604, 803 |
| FaiI | YATR | 9 cut(s) | 62, 357, 581, 602, 681, 786, 801, 836, 869 |
| FaqI | GGGAC | 1 cut(s) | 606 |
| FatI | CATG | 2 cut(s) | 600, 799 |
| Fnu4HI | GCNGC | 4 cut(s) | 24, 37, 40, 65 |
| Fsp4HI | GCNGC | 4 cut(s) | 24, 37, 40, 65 |
| FspAI | RTGCGCAY | 1 cut(s) | 884 |
| FspBI | CTAG | 1 cut(s) | 584 |
| FspI | TGCGCA | 1 cut(s) | 884 |
| GlaI | GCGC | 1 cut(s) | 884 |
| GluI | GCNGC | 4 cut(s) | 24, 37, 40, 65 |
| HgaI | GACGC | 1 cut(s) | 221 |
| HhaI | GCGC | 1 cut(s) | 885 |
| Hin1I | GRCGYC | 1 cut(s) | 232 |
| Hin1II | CATG | 2 cut(s) | 604, 803 |
| Hin6I | GCGC | 1 cut(s) | 883 |
| HinP1I | GCGC | 1 cut(s) | 883 |
| HinfI | GANTC | 6 cut(s) | 45, 146, 523, 796, 830, 961 |
| HphI | GGTGA | 1 cut(s) | 868 |
| Hpy166II | GTNNAC | 1 cut(s) | 100 |
| Hpy188I | TCNGA | 4 cut(s) | 50, 363, 528, 745 |
| Hpy188III | TCNNGA | 8 cut(s) | 126, 150, 191, 336, 460, 494, 520, 770 |
| Hpy8I | GTNNAC | 1 cut(s) | 100 |
| Hpy99I | CGWCG | 1 cut(s) | 218 |
| HpyAV | CCTTC | 4 cut(s) | 78, 252, 644, 898 |
| HpyCH4III | ACNGT | 7 cut(s) | 304, 475, 565, 698, 791, 910, 988 |
| HpyCH4IV | ACGT | 2 cut(s) | 464, 669 |
| HpyCH4V | TGCA | 5 cut(s) | 600, 660, 705, 728, 810 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 20, 229, 238 |
| HpyF3I | CTNAG | 2 cut(s) | 47, 203 |
| HpySE526I | ACGT | 2 cut(s) | 464, 669 |
| Hsp92I | GRCGYC | 1 cut(s) | 232 |
| Hsp92II | CATG | 2 cut(s) | 604, 803 |
| HspAI | GCGC | 1 cut(s) | 883 |
| Kzo9I | GATC | 2 cut(s) | 687, 927 |
| LmnI | GCTCC | 2 cut(s) | 620, 942 |
| LpnPI | CCDG | 9 cut(s) | 67, 163, 182, 321, 333, 360, 445, 538, 678 |
| Lsp1109I | GCAGC | 2 cut(s) | 10, 48 |
| LweI | GCATC | 2 cut(s) | 502, 715 |
| MaeI | CTAG | 1 cut(s) | 584 |
| MaeII | ACGT | 2 cut(s) | 464, 669 |
| MaeIII | GTNAC | 6 cut(s) | 29, 181, 548, 568, 608, 988 |
| MalI | GATC | 2 cut(s) | 689, 929 |
| MboI | GATC | 2 cut(s) | 687, 927 |
| MboII | GAAGA | 7 cut(s) | 65, 72, 424, 482, 652, 659, 730 |
| MfeI | CAATTG | 2 cut(s) | 376, 629 |
| MluCI | AATT | 9 cut(s) | 103, 339, 376, 428, 437, 629, 717, 762, 812 |
| MlyI | GAGTC | 1 cut(s) | 39 |
| MnlI | CCTC | 7 cut(s) | 50, 212, 246, 490, 499, 746, 913 |
| Mph1103I | ATGCAT | 1 cut(s) | 730 |
| MroXI | GAANNNNTTC | 2 cut(s) | 222, 737 |
| MseI | TTAA | 4 cut(s) | 467, 636, 716, 994 |
| MspCI | CTTAAG | 1 cut(s) | 635 |
| MspR9I | CCNGG | 1 cut(s) | 348 |
| MunI | CAATTG | 2 cut(s) | 376, 629 |
| Mva1269I | GAATGC | 1 cut(s) | 202 |
| MvaI | CCWGG | 1 cut(s) | 348 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 20, 229, 238 |
| NdeII | GATC | 2 cut(s) | 687, 927 |
| NlaIII | CATG | 2 cut(s) | 604, 803 |
| NmuCI | GTSAC | 1 cut(s) | 181 |
| NsbI | TGCGCA | 1 cut(s) | 884 |
| NsiI | ATGCAT | 1 cut(s) | 730 |
| PaeR7I | CTCGAG | 1 cut(s) | 126 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 308 |
| PctI | GAATGC | 1 cut(s) | 202 |
| PdmI | GAANNNNTTC | 2 cut(s) | 222, 737 |
| PfeI | GAWTC | 5 cut(s) | 146, 523, 796, 830, 961 |
| PkrI | GCNGC | 4 cut(s) | 25, 38, 41, 66 |
| PleI | GAGTC | 1 cut(s) | 39 |
| PpsI | GAGTC | 1 cut(s) | 39 |
| PsiI | TTATAA | 1 cut(s) | 786 |
| Psp6I | CCWGG | 1 cut(s) | 346 |
| PspGI | CCWGG | 1 cut(s) | 346 |
| SaqAI | TTAA | 4 cut(s) | 467, 636, 716, 994 |
| SatI | GCNGC | 4 cut(s) | 24, 37, 40, 65 |
| Sau3AI | GATC | 2 cut(s) | 687, 927 |
| SchI | GAGTC | 1 cut(s) | 39 |
| ScrFI | CCNGG | 1 cut(s) | 348 |
| SfaNI | GCATC | 2 cut(s) | 502, 715 |
| Sfr274I | CTCGAG | 1 cut(s) | 126 |
| SlaI | CTCGAG | 1 cut(s) | 126 |
| SmlI | CTYRAG | 5 cut(s) | 126, 191, 494, 635, 768 |
| SmoI | CTYRAG | 5 cut(s) | 126, 191, 494, 635, 768 |
| SpeI | ACTAGT | 1 cut(s) | 583 |
| Sse9I | AATT | 9 cut(s) | 103, 339, 376, 428, 437, 629, 717, 762, 812 |
| SsiI | CCGC | 4 cut(s) | 7, 40, 65, 253 |
| SspMI | CTAG | 1 cut(s) | 584 |
| StyD4I | CCNGG | 1 cut(s) | 346 |
| TaaI | ACNGT | 7 cut(s) | 304, 475, 565, 698, 791, 910, 988 |
| TaiI | ACGT | 2 cut(s) | 467, 672 |
| TaqI | TCGA | 4 cut(s) | 127, 213, 480, 951 |
| TasI | AATT | 9 cut(s) | 103, 339, 376, 428, 437, 629, 717, 762, 812 |
| TauI | GCSGC | 2 cut(s) | 42, 67 |
| TfiI | GAWTC | 5 cut(s) | 146, 523, 796, 830, 961 |
| Tru1I | TTAA | 4 cut(s) | 467, 636, 716, 994 |
| Tru9I | TTAA | 4 cut(s) | 467, 636, 716, 994 |
| TscAI | CASTG | 3 cut(s) | 211, 478, 568 |
| TseFI | GTSAC | 1 cut(s) | 181 |
| TseI | GCWGC | 2 cut(s) | 23, 36 |
| Tsp45I | GTSAC | 1 cut(s) | 181 |
| TspDTI | ATGAA | 4 cut(s) | 110, 617, 788, 864 |
| TspRI | CASTG | 3 cut(s) | 211, 478, 568 |
| Vha464I | CTTAAG | 1 cut(s) | 635 |
| XapI | RAATTY | 2 cut(s) | 339, 428 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 404 |
| XhoI | CTCGAG | 1 cut(s) | 126 |
| XmnI | GAANNNNTTC | 2 cut(s) | 222, 737 |
| XspI | CTAG | 1 cut(s) | 584 |
| Zsp2I | ATGCAT | 1 cut(s) | 730 |