Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Forward (+)

29165350 .. 29168036

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33650.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGATGATAATGCGCGGCAGCAGCAGAGGACGAAGAGGTATGCCTTTCCGTCTCTTTGATGATTTAGTCAGCCATAACTCGGCCTTGTTTCATTCTCAAACCTCTAAACCAAAGTCTACAACCACCCAAGTTGCCCAGATCGGGACAGAGCTCAATATCAGTAATCTTGAATATGCCCGCAAGGTGTTCAATGAATTGCTTCACAGGCGTCCTCGGCCTTCTGTTGTTCTTTTCAATCAAGTCTTGTGTCAAGTCGTGGAGCTGAAGCACTATGCGGAAGCCATCACTTTGTTTCAACAAATGCGTCTCTCTGGAATTAGTCCCAGTAATTATTCTCTAAATATACTCATGAACTGCTATTCCCATTTGAACCGAGTTGGGTTCAGTCTATCCGTATTGGGTCTGTTCTTCAAATCTGGTCTCCAACCGGATGACACGACTTTTACCACTCTTATCAAAGGCTTTCTTCTTCAGAACAGAGAGGCCAATGCTGCATTAGTTTTCAGAAAAATGGTGGAGGCAGGTATTCAGCCCAATGTGTTCACTTTCGGCAAATTGATAAAGCGCTTGTGCAGCAAGGGTAACAATGTTGCAGCCATTCAATTGTTAAGAAGAATGGAAGGAGGACCTTGCAAGCCTGATGTAGTTGTGTACAGCATGATCATCGATAGTCTCTGTAAGAATGCCATGATTGTAGACGCACTGAACCTCTTCTCTGAAATGCTCAGTAAGAGAATTACCCCAAACGTCATTACATATACCTCTTTGATTGATGGACTTTGCAAAGTAGGACACTGGAAACAGGCTACAAGGTTGTTGAATGAAATGGTGAGTCGAAATATTATTCCAAATGTTCACACCTTCGGTCTCTTGGTTGATTCCTTCTGTAAAGCAGGGAAGGTTCTGGAAGCTGAAACTGTGATTCAAATGATGATTCGCACAGATATGGAACCTAATGTGGTTACATACAATTCACTTATGGATGGTTATTGTTTGTGCGGAGAAATGAGCAAGGCAAAAGTAGTTTTTGATCGGATGGTTAGCAACGGCTACCTGGTTAACGTTCACAGTTATAACATATTGATACATGGATATTGTAAGCAGAAAGAGATTGATGAGGCAACAATTCTTTTTCAGGAAATGTCTCACAAAGGAATTGTTCCAAATACTGTTAGTTATAACACTCTTGTGGATGGTTTCTGCAAAGTCGGGAGGATACAAAGTGCAAAGAAGTTGTTCTCGGATATACAAGCTTGTGGTCAACTTCCAGATGTTCAAACTTATGCTATTTTACTGGAAGGCATATGTAAAAACCAACAGCTTTCAATGGCAGTTGAATTGGTTAGAGAGATGGAAGGCAAAAAGTTGTATCTGGATATTGTAGTGTACAATACTCTTATTCAGGGTTTGTGCAAAGATGGACAGATTGAATATGCAAAAGAAGTCTTCTGTGGGTTATCATCCAGGGGACTTCAACCTGATGTCCGGACATATAACATATTGATCAAGGGGCTTTGTCATGGAGGCCTAATGAGTGACGCAGTGAAGTTGCTAAAAGAAATGGAAGAGAAAGGATATCGTCCAGATGGTTGTACTTATAACATGTTTATCCTGGGGTTGATTAAGGATAATGAGACAGTACGGGCAAAGAAACTTATTCAACATATGGTGGAGAGTGGTTTCCCTGCAGATGCAACTGTGGGATTGATAGCTGAATTTTTCCCTAAAGTGAAAGGATATCGTCTAGATGGTTATAACACGTTTATCCTGGGGTTGATCAAGAATAAAGAGACAGTACGGGCAAAGAAACTTATTCAACATATGGTGGAGAGGGGTTTCTCTGCAGATGCTACTGAGGGATTGATAGCTGAATTTTTCCCTGAAGTGAAAGTAGATCCTGGAACAGCCATTGTTAGAAGGTTCAATATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

645

Amino Acids

72.3

Weight (kDa)

9.03

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	73 - 121	5.1e-08	PPR repeat family
PPR_3	PF13812	139 - 188	3.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	143 - 191	1.4e-08	PPR repeat family
PPR_3	PF13812	167 - 224	1.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	175 - 207	6.8e-07	PPR repeat
PPR_2	PF13041	186 - 227	2.5e-07	PPR repeat family
PPR_1	PF12854	211 - 241	1.8e-09	PPR repeat
PPR_2	PF13041	213 - 262	2.5e-17	PPR repeat family
PPR_long	PF17177	229 - 339	8.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	237 - 293	1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	245 - 277	1.3e-12	PPR repeat
PPR_2	PF13041	248 - 297	3.2e-17	PPR repeat family
PPR	PF01535	251 - 281	1.7e-07	PPR repeat
PPR_1	PF12854	280 - 311	7.2e-07	PPR repeat
PPR_2	PF13041	291 - 331	1e-08	PPR repeat family
PPR_3	PF13812	307 - 364	3.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	316 - 347	1.5e-11	PPR repeat
PPR_2	PF13041	318 - 369	2e-15	PPR repeat family
PPR	PF01535	321 - 348	2.1e-07	PPR repeat
TPR_24	PF23276	349 - 449	4e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	351 - 382	1.5e-11	PPR repeat
PPR_2	PF13041	355 - 404	4.2e-15	PPR repeat family
PPR	PF01535	358 - 387	5.8e-06	PPR repeat
PPR_1	PF12854	387 - 419	3.5e-06	PPR repeat
PPR_3	PF13812	414 - 470	9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	424 - 450	1.2e-07	PPR repeat
PPR_2	PF13041	426 - 474	1.5e-17	PPR repeat family
PPR	PF01535	428 - 457	6.3e-06	PPR repeat
PPR_3	PF13812	455 - 508	1.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	456 - 489	3.5e-13	PPR repeat
PPR	PF01535	464 - 492	1.4e-08	PPR repeat
PPR_2	PF13041	473 - 508	2.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1074, 1179, 1599, 1755
Acc36I	ACCTGC	1 cut(s)	512
AccI	GTMKAC	2 cut(s)	116, 696
AccII	CGCG	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	1485
AciI	CCGC	4 cut(s)	15, 178, 275, 999
AclI	AACGTT	1 cut(s)	1062
AclWI	GGATC	1 cut(s)	1889
AcsI	RAATTY	2 cut(s)	1715, 1871
AcuI	CTGAAG	3 cut(s)	284, 455, 1902
AcyI	GRCGYC	1 cut(s)	208
AfaI	GTAC	5 cut(s)	653, 1388, 1594, 1641, 1797
AfeI	AGCGCT	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	79, 141
AflIII	ACRYGT	2 cut(s)	1602, 1758
AjnI	CCWGG	5 cut(s)	1053, 1463, 1611, 1767, 1897
AleI	CACNNNNGTG	1 cut(s)	1187
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	7 cut(s)	151, 262, 911, 1253, 1321, 1712, 1868
AluI	AGCT	7 cut(s)	151, 262, 911, 1253, 1321, 1712, 1868
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	8 cut(s)	56, 311, 425, 677, 872, 1149, 1628, 1784
AlwI	GGATC	1 cut(s)	1889
Aor13HI	TCCGGA	1 cut(s)	1485
Aor51HI	AGCGCT	1 cut(s)	566
AoxI	GGCC	4 cut(s)	81, 215, 483, 1525
ApeKI	GCWGC	5 cut(s)	18, 21, 491, 573, 593
ApoI	RAATTY	2 cut(s)	1715, 1871
Asp700I	GAANNNNTTC	3 cut(s)	198, 710, 1235
AspLEI	GCGC	2 cut(s)	15, 567
AspS9I	GGNCC	1 cut(s)	626
AsuHPI	GGTGA	1 cut(s)	841
AvaII	GGWCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	1438
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	5 cut(s)	30, 33, 478, 585, 605
BccI	CCATC	9 cut(s)	290, 767, 977, 1030, 1187, 1345, 1412, 1580, 1742
BceAI	ACGGC	1 cut(s)	1063
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
BciVI	GTATCC	1 cut(s)	1209
BclI	TGATCA	3 cut(s)	660, 1503, 1776
BcoDI	GTCTC	8 cut(s)	56, 311, 425, 677, 872, 1149, 1628, 1784
BfaI	CTAG	1 cut(s)	1745
BfmI	CTRYAG	2 cut(s)	1686, 1842
BfoI	RGCGCY	1 cut(s)	568
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	1209
BisI	GCNGC	6 cut(s)	16, 19, 22, 492, 574, 594
BlsI	GCNGC	6 cut(s)	17, 20, 23, 493, 575, 595
Bme1390I	CCNGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	1 cut(s)	951
BmrFI	CCNGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	1681, 1837
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	1438
Bsa29I	ATCGAT	1 cut(s)	666
BsaHI	GRCGYC	1 cut(s)	208
BsaI	GGTCTC	2 cut(s)	425, 872
BsaJI	CCNNGG	4 cut(s)	212, 1464, 1612, 1768
BsaWI	WCCGGW	2 cut(s)	427, 1485
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 141
Bse1I	ACTGG	3 cut(s)	324, 800, 1299
BseAI	TCCGGA	1 cut(s)	1485
BseBI	CCWGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	4 cut(s)	212, 1464, 1612, 1768
BseGI	GGATG	5 cut(s)	436, 988, 1041, 1198, 1460
BseLI	CCNNNNNNNGG	2 cut(s)	79, 141
BseMII	CTCAG	2 cut(s)	739, 1845
BseNI	ACTGG	3 cut(s)	324, 800, 1299
BseXI	GCAGC	5 cut(s)	30, 33, 478, 585, 605
BsgI	GTGCAG	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	83, 217, 485, 1527
BshVI	ATCGAT	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	428, 1486
BslFI	GGGAC	3 cut(s)	157, 306, 1482
BslI	CCNNNNNNNGG	2 cut(s)	79, 141
BsmAI	GTCTC	8 cut(s)	56, 311, 425, 677, 872, 1149, 1628, 1784
BsmBI	CGTCTC	2 cut(s)	56, 311
BsmFI	GGGAC	3 cut(s)	157, 306, 1482
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	4 cut(s)	83, 217, 485, 1527
Bso31I	GGTCTC	2 cut(s)	425, 872
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	1485
Bsp1407I	TGTACA	2 cut(s)	651, 1386
Bsp143I	GATC	6 cut(s)	138, 660, 1030, 1503, 1776, 1894
BspACI	CCGC	4 cut(s)	15, 178, 275, 999
BspANI	GGCC	4 cut(s)	83, 217, 485, 1527
BspCNI	CTCAG	2 cut(s)	738, 1846
BspDI	ATCGAT	1 cut(s)	666
BspEI	TCCGGA	1 cut(s)	1485
BspFNI	CGCG	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	951
BspMAI	CTGCAG	2 cut(s)	1690, 1846
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	1889
BspTNI	GGTCTC	2 cut(s)	425, 872
BsrGI	TGTACA	2 cut(s)	651, 1386
BsrI	ACTGG	3 cut(s)	324, 800, 1299
BssECI	CCNNGG	4 cut(s)	212, 1464, 1612, 1768
BssMI	GATC	6 cut(s)	138, 660, 1030, 1503, 1776, 1894
BssNI	GRCGYC	1 cut(s)	208
Bst2UI	CCWGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
Bst4CI	ACNGT	6 cut(s)	919, 1070, 1171, 1639, 1699, 1795
Bst6I	CTCTTC	3 cut(s)	28, 716, 1560
BstACI	GRCGYC	1 cut(s)	208
BstAUI	TGTACA	2 cut(s)	651, 1386
BstC8I	GCNNGC	2 cut(s)	178, 635
BstDEI	CTNAG	2 cut(s)	725, 1854
BstF5I	GGATG	5 cut(s)	436, 988, 1041, 1198, 1460
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	568
BstHHI	GCGC	2 cut(s)	15, 567
BstKTI	GATC	6 cut(s)	141, 663, 1033, 1506, 1779, 1897
BstMAI	GTCTC	8 cut(s)	56, 311, 425, 677, 872, 1149, 1628, 1784
BstMBI	GATC	6 cut(s)	138, 660, 1030, 1503, 1776, 1894
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 205, 214, 491, 573
BstNI	CCWGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
BstNSI	RCATGY	1 cut(s)	1606
BstSCI	CCNGG	5 cut(s)	1053, 1463, 1611, 1767, 1897
BstSFI	CTRYAG	2 cut(s)	1686, 1842
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	30, 33, 478, 585, 605
BstV2I	GAAGAC	1 cut(s)	1438
BstX2I	RGATCY	1 cut(s)	1894
BstYI	RGATCY	1 cut(s)	1894
Bsu15I	ATCGAT	1 cut(s)	666
BsuI	GTATCC	1 cut(s)	1209
BsuRI	GGCC	4 cut(s)	83, 217, 485, 1527
BsuTUI	ATCGAT	1 cut(s)	666
BtsCI	GGATG	5 cut(s)	436, 988, 1041, 1198, 1460
BtsI	GCAGTG	1 cut(s)	1548
BtsIMutI	CAGTG	3 cut(s)	701, 793, 1548
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	178, 635
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	2 cut(s)	15, 567
Cfr13I	GGNCC	1 cut(s)	626
ClaI	ATCGAT	1 cut(s)	666
CseI	GACGC	4 cut(s)	197, 293, 707, 1547
CsiI	ACCWGGT	1 cut(s)	1053
Csp6I	GTAC	5 cut(s)	652, 1387, 1593, 1640, 1796
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	6 cut(s)	349, 658, 688, 1088, 1520, 1603
CviQI	GTAC	5 cut(s)	652, 1387, 1593, 1640, 1796
DdeI	CTNAG	2 cut(s)	725, 1854
DpnI	GATC	6 cut(s)	140, 662, 1032, 1505, 1778, 1896
DpnII	GATC	6 cut(s)	138, 660, 1030, 1503, 1776, 1894
Eam1104I	CTCTTC	3 cut(s)	28, 716, 1560
EarI	CTCTTC	3 cut(s)	28, 716, 1560
Ecl136II	GAGCTC	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	1527
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	2 cut(s)	425, 872
Eco32I	GATATC	2 cut(s)	1577, 1739
Eco47I	GGWCC	1 cut(s)	626
Eco47III	AGCGCT	1 cut(s)	566
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	3 cut(s)	284, 455, 1902
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRII	CCWGG	5 cut(s)	1053, 1463, 1611, 1767, 1897
EcoRV	GATATC	2 cut(s)	1577, 1739
EcoT38I	GRGCYC	1 cut(s)	153
Esp3I	CGTCTC	2 cut(s)	56, 311
FaeI	CATG	6 cut(s)	352, 661, 691, 1091, 1523, 1606
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	3 cut(s)	157, 306, 1482
FatI	CATG	6 cut(s)	348, 657, 687, 1087, 1519, 1602
FauI	CCCGC	1 cut(s)	185
FauNDI	CATATG	3 cut(s)	1304, 1665, 1821
FbaI	TGATCA	3 cut(s)	660, 1503, 1776
FblI	GTMKAC	2 cut(s)	116, 696
Fnu4HI	GCNGC	6 cut(s)	16, 19, 22, 492, 574, 594
FokI	GGATG	5 cut(s)	443, 995, 1048, 1205, 1447
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	6 cut(s)	16, 19, 22, 492, 574, 594
FspBI	CTAG	1 cut(s)	1745
GlaI	GCGC	2 cut(s)	14, 566
GluI	GCNGC	6 cut(s)	16, 19, 22, 492, 574, 594
HaeII	RGCGCY	1 cut(s)	568
HaeIII	GGCC	4 cut(s)	83, 217, 485, 1527
HapII	CCGG	2 cut(s)	428, 1486
HgaI	GACGC	4 cut(s)	197, 293, 707, 1547
HhaI	GCGC	2 cut(s)	15, 567
Hin1I	GRCGYC	1 cut(s)	208
Hin1II	CATG	6 cut(s)	352, 661, 691, 1091, 1523, 1606
Hin6I	GCGC	2 cut(s)	13, 565
HinP1I	GCGC	2 cut(s)	13, 565
HincII	GTYRAC	2 cut(s)	1060, 1262
HindII	GTYRAC	2 cut(s)	1060, 1262
HindIII	AAGCTT	1 cut(s)	1251
HinfI	GANTC	4 cut(s)	832, 878, 922, 934
HpaI	GTTAAC	1 cut(s)	1060
HpaII	CCGG	2 cut(s)	428, 1486
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	9 cut(s)	117, 543, 652, 697, 856, 1060, 1066, 1262, 1387
Hpy188I	TCNGA	5 cut(s)	474, 506, 718, 1035, 1243
Hpy8I	GTNNAC	9 cut(s)	117, 543, 652, 697, 856, 1060, 1066, 1262, 1387
HpyAV	CCTTC	8 cut(s)	228, 614, 871, 892, 892, 1292, 1349, 1911
HpyCH4III	ACNGT	6 cut(s)	919, 1070, 1171, 1639, 1699, 1795
HpyCH4IV	ACGT	3 cut(s)	747, 1062, 1760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 205, 214, 491, 573
HpyF3I	CTNAG	2 cut(s)	725, 1854
HpySE526I	ACGT	3 cut(s)	747, 1062, 1760
Hsp92I	GRCGYC	1 cut(s)	208
Hsp92II	CATG	6 cut(s)	352, 661, 691, 1091, 1523, 1606
HspAI	GCGC	2 cut(s)	13, 565
Kpn2I	TCCGGA	1 cut(s)	1485
Ksp22I	TGATCA	3 cut(s)	660, 1503, 1776
KspAI	GTTAAC	1 cut(s)	1060
Kzo9I	GATC	6 cut(s)	138, 660, 1030, 1503, 1776, 1894
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	5 cut(s)	30, 33, 478, 585, 605
LweI	GCATC	2 cut(s)	1681, 1837
MabI	ACCWGGT	1 cut(s)	1053
MaeI	CTAG	1 cut(s)	1745
MaeII	ACGT	3 cut(s)	747, 1062, 1760
MaeIII	GTNAC	3 cut(s)	581, 961, 1535
MalI	GATC	6 cut(s)	140, 662, 1032, 1505, 1778, 1896
MboI	GATC	6 cut(s)	138, 660, 1030, 1503, 1776, 1894
MboII	GAAGA	8 cut(s)	45, 400, 458, 461, 624, 703, 1438, 1577
MfeI	CAATTG	1 cut(s)	602
MflI	RGATCY	1 cut(s)	1894
MhlI	GDGCHC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	448
MroI	TCCGGA	1 cut(s)	1485
MroXI	GAANNNNTTC	3 cut(s)	198, 710, 1235
MseI	TTAA	3 cut(s)	608, 1059, 1623
MslI	CAYNNNNRTG	2 cut(s)	944, 1187
MspI	CCGG	2 cut(s)	428, 1486
MspR9I	CCNGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
MunI	CAATTG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	5 cut(s)	21, 205, 214, 491, 573
NdeI	CATATG	3 cut(s)	1304, 1665, 1821
NdeII	GATC	6 cut(s)	138, 660, 1030, 1503, 1776, 1894
NlaIII	CATG	6 cut(s)	352, 661, 691, 1091, 1523, 1606
NlaIV	GGNNCC	1 cut(s)	951
NmeAIII	GCCGAG	2 cut(s)	59, 193
NmuCI	GTSAC	1 cut(s)	1535
NspI	RCATGY	1 cut(s)	1606
OliI	CACNNNNGTG	1 cut(s)	1187
PagI	TCATGA	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	1527
PciI	ACATGT	1 cut(s)	1602
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	3 cut(s)	198, 710, 1235
PfeI	GAWTC	3 cut(s)	878, 922, 934
PfoI	TCCNGGA	1 cut(s)	1897
PkrI	GCNGC	6 cut(s)	17, 20, 23, 493, 575, 595
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
PpuMI	RGGWCCY	1 cut(s)	626
PscI	ACATGT	1 cut(s)	1602
PsiI	TTATAA	4 cut(s)	1074, 1179, 1599, 1755
Psp124BI	GAGCTC	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	1062
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	5 cut(s)	1053, 1463, 1611, 1767, 1897
PspGI	CCWGG	5 cut(s)	1053, 1463, 1611, 1767, 1897
PspN4I	GGNNCC	1 cut(s)	951
PspPI	GGNCC	1 cut(s)	626
PspPPI	RGGWCCY	1 cut(s)	626
PstI	CTGCAG	2 cut(s)	1690, 1846
PsuI	RGATCY	1 cut(s)	1894
RsaI	GTAC	5 cut(s)	653, 1388, 1594, 1641, 1797
RsaNI	GTAC	5 cut(s)	652, 1387, 1593, 1640, 1796
RseI	CAYNNNNRTG	2 cut(s)	944, 1187
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	608, 1059, 1623
SatI	GCNGC	6 cut(s)	16, 19, 22, 492, 574, 594
Sau3AI	GATC	6 cut(s)	138, 660, 1030, 1503, 1776, 1894
Sau96I	GGNCC	1 cut(s)	626
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	5 cut(s)	1055, 1465, 1613, 1769, 1899
SduI	GDGCHC	1 cut(s)	153
SexAI	ACCWGGT	1 cut(s)	1053
SfaNI	GCATC	2 cut(s)	1681, 1837
SfcI	CTRYAG	2 cut(s)	1686, 1842
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	2 cut(s)	944, 1187
SseBI	AGGCCT	1 cut(s)	1527
SsiI	CCGC	4 cut(s)	15, 178, 275, 999
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	1 cut(s)	1745
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	1527
StyD4I	CCNGG	5 cut(s)	1053, 1463, 1611, 1767, 1897
TaaI	ACNGT	6 cut(s)	919, 1070, 1171, 1639, 1699, 1795
TaiI	ACGT	3 cut(s)	750, 1065, 1763
TaqI	TCGA	2 cut(s)	666, 835
TaqII	GACCGA	1 cut(s)	854
TatI	WGTACW	3 cut(s)	651, 1386, 1592
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	878, 922, 934
Tru1I	TTAA	3 cut(s)	608, 1059, 1623
Tru9I	TTAA	3 cut(s)	608, 1059, 1623
TscAI	CASTG	3 cut(s)	708, 800, 1548
TseFI	GTSAC	1 cut(s)	1535
TseI	GCWGC	5 cut(s)	18, 21, 491, 573, 593
Tsp45I	GTSAC	1 cut(s)	1535
TspDTI	ATGAA	4 cut(s)	80, 207, 365, 837
TspGWI	ACGGA	2 cut(s)	38, 382
TspRI	CASTG	3 cut(s)	708, 800, 1548
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	2 cut(s)	1715, 1871
XbaI	TCTAGA	1 cut(s)	1744
XceI	RCATGY	1 cut(s)	1606
XmiI	GTMKAC	2 cut(s)	116, 696
XmnI	GAANNNNTTC	3 cut(s)	198, 710, 1235
XspI	CTAG	1 cut(s)	1745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.